IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides ATCC 17025



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.34 STD DEV: 3.47
Rhodobacter sphaeroides ATCC 17025, complete genome - 1..3217726
3111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1122	 67.68	0	1161381..1163558	+	725	146277180	-	Rsph17025_1133	-	glycogen branching enzyme
1123	 64.78	-1	1163634..1164905	+	423	146277181	glgC	Rsph17025_1134	-	glucose-1-phosphate adenylyltransferase
1124	 70.35	0	1165014..1166450	+	478	146277182	-	Rsph17025_1135	-	glycogen/starch synthase, ADP-glucose type
1125	 69.27	0	1166447..1168561	+	704	146277183	-	Rsph17025_1136	-	glycogen debranching enzyme GlgX
1126	 67.22	0	1168558..1170192	+	544	146277184	-	Rsph17025_1137	-	phosphoglucomutase
1127	 68.72	0	1170372..1171052	+	226	146277185	-	Rsph17025_1138	-	two component LuxR family transcriptional regulator
1128	 71.50	0	1171163..1172341	+	392	146277186	-	Rsph17025_1139	-	hypothetical protein
1129	 69.89	0	1172338..1174539	+	733	146277187	-	Rsph17025_1140	-	PAS/PAC sensor hybrid histidine kinase
1130	 68.72	0	1174646..1175182	+	178	146277188	-	Rsph17025_1141	-	carbon monoxide dehydrogenase subunit G
1131	 64.39	-1	1175211..1175693	+	160	146277189	-	Rsph17025_1142	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
1132	 66.88	0	1175723..1178095	+	790	146277190	-	Rsph17025_1143	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1133	 71.76	0	1178106..1178891	+	261	146277191	-	Rsph17025_1144	-	molybdopterin dehydrogenase, FAD-binding
1134	 72.64	+1	1179036..1179989	-	317	146277192	-	Rsph17025_1145	-	glucokinase
1135	 69.46	0	1180008..1181330	-	440	146277193	-	Rsph17025_1146	-	Beta-glucosidase
1136	 67.95	0	1181348..1182982	+	544	146277194	-	Rsph17025_1147	-	extracellular solute-binding protein
1137	 64.56	-1	1183131..1184126	+	331	146277195	-	Rsph17025_1148	-	binding-protein-dependent transport systems inner membrane component
1138	 68.63	0	1184126..1185247	+	373	146277196	-	Rsph17025_1149	-	binding-protein-dependent transport systems inner membrane component
1139	 68.63	0	1185278..1186396	+	372	146277197	-	Rsph17025_1150	-	ABC transporter related
1140	 74.87	+1	1186766..1187740	+	324	146277198	-	Rsph17025_1151	-	tellurite resistance protein and related permease-like protein
1141	 69.08	0	1187863..1189311	+	482	146277199	-	Rsph17025_1152	-	inosine-5'-monophosphate dehydrogenase
1142	 70.88	0	1189360..1189929	-	189	146277200	-	Rsph17025_1153	-	TetR family transcriptional regulator
1143	 69.41	0	1190076..1191203	+	375	146277201	-	Rsph17025_1154	-	RND family efflux transporter MFP subunit
1144	 66.37	0	1191211..1194288	+	1025	146277202	-	Rsph17025_1155	-	acriflavin resistance protein
1145	 69.32	0	1194420..1195586	+	388	146277203	-	Rsph17025_1156	-	queuine tRNA-ribosyltransferase
1146	 69.79	0	1195681..1196769	+	362	146277204	-	Rsph17025_1157	-	NADH:flavin oxidoreductase/NADH oxidase
1147	 65.59	0	1197055..1199463	+	802	146277205	-	Rsph17025_1158	-	ATP-dependent protease La
1148	 70.69	0	1199683..1201797	+	704	146277206	-	Rsph17025_1159	-	DNA ligase, NAD-dependent
1149	 72.37	+1	1201794..1203881	+	695	146277207	-	Rsph17025_1160	-	DEAD/DEAH box helicase domain-containing protein
1150	 59.35	-2	1204065..1204187	+	40	146277208	-	Rsph17025_1161	-	hypothetical protein
1151	 71.43	0	1204330..1204770	-	146	146277209	-	Rsph17025_1162	-	NifU-like protein
1152	 68.61	0	1204835..1205194	+	119	146277210	-	Rsph17025_1163	-	phosphoribosyl-AMP cyclohydrolase
1153	 72.68	+1	1205198..1206028	-	276	146277211	-	Rsph17025_1164	-	glutamate--tRNA ligase
1154	 65.92	0	1206013..1207347	-	444	146277212	-	Rsph17025_1165	-	tRNA (uracil-5-)-methyltransferase Gid
1155	 66.81	0	1207351..1210065	-	904	146277213	-	Rsph17025_1166	-	DNA gyrase subunit A
1156	 60.98	-2	1210307..1210570	+	87	146277214	-	Rsph17025_1167	-	Usg family protein
1157	 70.33	0	1210583..1211509	-	308	146277215	-	Rsph17025_1168	-	arginase
1158	 69.15	0	1211751..1213721	+	656	146277216	-	Rsph17025_1169	-	cytochrome c-type biogenesis protein CcmF
1159	 70.61	0	1213718..1214173	+	151	146277217	-	Rsph17025_1170	-	cytochrome C biogenesis protein
1160	 71.30	0	1214238..1215014	+	258	146277218	-	Rsph17025_1171	-	enoyl-CoA hydratase/isomerase
1161	 68.09	0	1215050..1215610	-	186	146277219	ilvH	Rsph17025_1172	-	acetolactate synthase 3 regulatory subunit
1162	 66.61	0	1215693..1217447	-	584	146277220	-	Rsph17025_1173	-	acetolactate synthase 3 catalytic subunit
1163	 66.34	0	1217751..1218665	-	304	146277221	-	Rsph17025_1174	-	CaCA family Na(+)/Ca(+) antiporter
1164	 66.90	0	1218895..1219737	-	280	146277222	-	Rsph17025_1175	-	arginyl-tRNA-protein transferase
1165	 67.77	0	1219840..1220292	-	150	146277223	-	Rsph17025_1176	-	RDD domain-containing protein
1166	 69.59	0	1220368..1220778	-	136	146277224	-	Rsph17025_1177	-	hypothetical protein
1167	 71.78	0	1221018..1223831	+	937	146277225	-	Rsph17025_1178	-	(glutamate--ammonia-ligase) adenylyltransferase
1168	 72.22	+1	1223818..1224087	+	89	146277226	-	Rsph17025_1179	-	hypothetical protein
1169	 74.18	+1	1224107..1224745	-	212	146277227	-	Rsph17025_1180	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
1170	 71.37	0	1225003..1226808	-	601	146277228	-	Rsph17025_1181	-	phosphogluconate dehydratase
1171	 67.35	0	1226971..1227261	-	96	146277229	-	Rsph17025_1182	-	hypothetical protein
1172	 72.35	+1	1227321..1228604	+	427	146277230	-	Rsph17025_1183	-	putative RNA methylase
1173	 74.40	+1	1228601..1229143	+	180	146277231	-	Rsph17025_1184	-	hypothetical protein
1174	 68.56	0	1229182..1229868	-	228	146277232	-	Rsph17025_1185	-	peptidase M48, Ste24p
1175	 67.97	0	1229978..1230361	-	127	146277233	-	Rsph17025_1186	-	hypothetical protein
1176	 67.59	0	1230563..1231747	-	394	146277234	-	Rsph17025_1187	-	hypothetical protein
1177	 66.67	0	1231770..1231934	-	54	146277235	-	Rsph17025_1188	-	hypothetical protein
1178	 71.68	0	1231931..1233325	-	464	146277236	-	Rsph17025_1189	-	hypothetical protein
1179	 69.09	0	1233325..1233777	-	150	146277237	-	Rsph17025_1190	-	GCN5-related N-acetyltransferase
1180	 64.29	-1	1233801..1234640	-	279	146277238	-	Rsph17025_1191	-	ATPase
1181	 64.15	-1	1234773..1235249	+	158	146277239	-	Rsph17025_1192	-	TraR/DksA family transcriptional regulator
1182	 71.53	0	1235347..1236519	+	390	146277240	-	Rsph17025_1193	-	monooxygenase, FAD-binding
1183	 70.78	0	1236531..1236992	-	153	146277241	-	Rsph17025_1194	-	thioesterase superfamily protein
1184	 68.46	0	1237067..1237846	-	259	146277242	-	Rsph17025_1195	-	exodeoxyribonuclease III Xth
1185	 64.22	-1	1237919..1238245	-	108	146277243	-	Rsph17025_1196	-	iron-sulfur cluster assembly accessory protein
1186	 67.37	0	1238320..1239456	+	378	146277244	-	Rsph17025_1197	-	putative deoxyguanosinetriphosphate triphosphohydrolase
1187	 67.70	0	1239562..1240530	+	322	146277245	-	Rsph17025_1198	-	putative ribonuclease BN
1188	 76.55	+2	1240539..1241681	-	380	146277246	-	Rsph17025_1199	-	iron-containing alcohol dehydrogenase
1189	 71.59	0	1241678..1243159	-	493	146277247	-	Rsph17025_1200	-	glycerol kinase
1190	 66.43	0	1243317..1245035	-	572	146277248	-	Rsph17025_1201	-	extracellular solute-binding protein
1191	 68.86	0	1245094..1245366	-	90	146277249	-	Rsph17025_1202	-	small integral membrane protein-like protein
1192	 68.52	0	1245379..1245702	-	107	146277250	-	Rsph17025_1203	-	hypothetical protein
1193	 62.44	-1	1245702..1246505	-	267	146277251	-	Rsph17025_1204	-	binding-protein-dependent transport systems inner membrane component
1194	 62.66	-1	1246543..1247415	-	290	146277252	-	Rsph17025_1205	-	binding-protein-dependent transport systems inner membrane component
1195	 68.97	0	1247415..1248500	-	361	146277253	-	Rsph17025_1206	-	ABC transporter related
1196	 69.61	0	1248511..1249599	-	362	146277254	-	Rsph17025_1207	-	ABC transporter related
1197	 71.28	0	1249721..1251325	-	534	146277255	glpD	Rsph17025_1208	-	glycerol-3-phosphate dehydrogenase
1198	 70.65	0	1251473..1251748	-	91	146277256	-	Rsph17025_1209	-	hypothetical protein
1199	 73.28	+1	1251939..1252316	+	125	146277257	-	Rsph17025_1210	-	hypothetical protein
1200	 68.21	0	1252358..1254691	-	777	146277258	-	Rsph17025_1211	-	quinoprotein glucose dehydrogenase
1201	 64.95	0	1254844..1255485	-	213	146277259	-	Rsph17025_1212	-	PRC-barrel domain-containing protein
1202	 71.50	0	1255906..1256733	-	275	146277260	-	Rsph17025_1213	-	hypothetical protein
1203	 72.26	+1	1256798..1257745	-	315	146277261	-	Rsph17025_1214	-	transport-associated
1204	 66.40	0	1258546..1258920	-	124	146277262	-	Rsph17025_1215	-	response regulator receiver protein
1205	 70.12	0	1259063..1259815	+	250	146277263	-	Rsph17025_1216	-	MgtC/SapB transporter
1206	 72.48	+1	1259841..1260098	-	85	146277264	-	Rsph17025_1217	-	hypothetical protein
1207	 71.94	+1	1260095..1262635	-	846	146277265	-	Rsph17025_1218	-	ATP dependent DNA ligase
1208	 63.85	-1	1263283..1263495	-	70	146277266	-	Rsph17025_1219	-	hypothetical protein
1209	 66.67	0	1263622..1264125	+	167	146277267	-	Rsph17025_1220	-	ECF subfamily RNA polymerase sigma-24 factor
1210	 71.81	+1	1264433..1265365	+	310	146277268	-	Rsph17025_1221	-	malonyl CoA-acyl carrier protein transacylase
1211	 74.05	+1	1265473..1266393	-	306	146277269	xerC	Rsph17025_1222	-	site-specific tyrosine recombinase XerC
1212	 69.86	0	1266390..1267079	-	229	146277270	-	Rsph17025_1223	-	hypothetical protein
1213	 65.15	0	1267102..1267761	-	219	146277271	-	Rsph17025_1224	-	putative translaldolase
1214	 73.83	+1	1267857..1270049	+	730	146277272	-	Rsph17025_1225	-	primosome assembly protein PriA
1215	 68.59	0	1270174..1270848	+	224	146277273	-	Rsph17025_1226	-	peptide methionine sulfoxide reductase
1216	 70.32	0	1270912..1271787	+	291	146277274	-	Rsph17025_1227	-	ribosomal L11 methyltransferase
1217	 71.30	0	1271904..1272248	+	114	146277275	-	Rsph17025_1228	-	hypothetical protein
1218	 69.26	0	1272378..1272608	-	76	146277276	-	Rsph17025_1229	-	hypothetical protein
1219	 67.46	0	1272898..1273404	+	168	146277277	ruvC	Rsph17025_1230	-	Holliday junction resolvase
1220	 71.26	0	1273401..1274075	+	224	146277278	ruvA	Rsph17025_1231	-	Holliday junction DNA helicase motor protein
1221	 69.22	0	1274163..1275062	+	299	146277279	-	Rsph17025_1232	-	heat shock protein HtpX
68.34	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.