IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.78   STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
762	 68.21	0	782378..785032	+	884	77462727	topA	RSP_2178	-	DNA topoisomerase I
763	 69.78	0	785081..786109	-	342	77462728	proV	RSP_2179	-	ABC glycine betaine/L-proline tranporter, ATPase subunit, ProV
764	 65.03	0	786106..786960	-	284	77462729	proW	RSP_2180	-	ABC glycine betaine/L-proline transporter, inner membrane subunit
765	 64.72	0	787065..787991	-	308	77462730	proX	RSP_2181	-	ABC glycine betaine/L-proline transporter, periplasmic substrate-binding subunit
766	 68.21	0	788078..788662	+	194	77462731	betI	RSP_2182	-	transcriptional regulator BetI
767	 71.14	0	788659..790110	+	483	77462732	betB	RSP_2183	-	betaine aldehyde dehydrogenase
768	 69.28	0	790120..791766	+	548	77462733	betA	RSP_2184	-	choline dehydrogenase
769	 73.72	+1	791845..792525	+	226	77462734	-	RSP_2185	-	nuclease (SNase-like)
770	 70.27	0	792833..794218	-	461	77462735	-	RSP_2186	-	MerR family transcriptional regulator
771	 68.55	0	794280..795500	-	406	77462736	-	RSP_2187	-	major facilitator superfamily multidrug-efflux transporter
772	 59.32	-2	795537..795890	-	117	77462737	-	RSP_2188	-	hypothetical protein
773	 64.91	0	796019..797551	+	510	77462738	pccB	RSP_2189	-	propionyl-CoA carboxylase beta chain
774	 67.53	0	797703..798050	+	115	77462739	-	RSP_6040	-	hypothetical protein
775	 70.18	0	798472..798870	+	132	77462740	-	RSP_2190	-	hypothetical protein
776	 72.37	0	799185..799412	+	75	77462741	-	RSP_6221	-	hypothetical protein
777	 66.43	0	799508..801595	+	695	77462742	pccA	RSP_2191	-	propionyl-CoA carboxylase alpha subunit
778	 66.22	0	801597..802040	-	147	77462743	-	RSP_6041	-	hypothetical protein
779	 66.71	0	802132..804261	+	709	77462744	mcmA	RSP_2192	-	methylmalonyl-CoA mutase
780	 72.22	0	804825..805958	+	377	77462745	gcvT	RSP_2193	-	glycine cleavage system aminomethyltransferase T
781	 62.18	-1	805967..806323	+	118	77462746	gcvH	RSP_2194	-	glycine cleavage system protein H
782	 69.00	0	806327..809197	+	956	77462747	gcvP	RSP_2195	-	glycine dehydrogenase
783	 69.30	0	809387..811588	-	733	77462748	-	RSP_2196	-	3-hydroxyacyl-CoA dehydrogenase
784	 69.72	0	811603..812814	-	403	77462749	-	RSP_2197	-	acetyl-CoA acetyltransferase
785	 72.75	0	812885..813328	-	147	77462750	-	RSP_2198	-	hypothetical protein
786	 67.00	0	813355..815130	-	591	77462751	-	RSP_2199	-	putative acyl-CoA dehydrogenase
787	 67.17	0	815149..815547	-	132	77462752	-	RSP_2200	-	MerR family transcriptional regulator
788	 66.40	0	815669..816049	-	126	77462753	-	RSP_2201	-	MerR family transcriptional regulator
789	 75.20	+1	816157..816648	+	163	77462754	-	RSP_2202	-	hypothetical protein
790	 69.23	0	816645..817151	+	168	77462755	-	RSP_2203	-	hypothetical protein
791	 71.84	0	817144..818478	+	444	77462756	-	RSP_2204	-	multidrug efflux pump, MATE family
792	 68.38	0	818490..819248	-	252	77462757	-	RSP_2205	-	hypothetical protein
793	 66.12	0	819245..820165	-	306	77462758	-	RSP_2206	-	hypothetical protein
794	 72.66	0	820251..821051	-	266	77462759	deoD	RSP_2207	-	purine nucleoside phosphorylase
795	 69.25	0	821053..822021	-	322	77462760	-	RSP_2208	-	ABC sugar transporter, inner membrane subunit
796	 68.40	0	822018..823112	-	364	77462761	-	RSP_2209	-	ABC sugar transporter, inner membrane subunit
797	 69.26	0	823112..824689	-	525	77462762	-	RSP_2210	-	ABC sugar transporter, fused ATPase subunits
798	 64.66	0	824690..825685	-	331	77462763	-	RSP_2211	-	ABC transporter, periplasmic substrate-binding protein
799	 75.36	+1	825839..826321	-	160	77462764	rimI	RSP_2212	-	putative acetyltransferase
800	 76.03	+1	826318..826926	-	202	77462765	-	RSP_2213	-	hypothetical protein
801	 67.74	0	826916..827476	-	186	77462766	-	RSP_2214	-	nitrogen-fixing NifU
802	 68.15	0	827623..828027	-	134	77462767	-	RSP_2215	-	hypothetical protein
803	 68.52	0	828137..829000	-	287	77462768	ilvE	RSP_2216	-	aminotransferase
804	 71.25	0	829071..829550	-	159	77462769	-	RSP_2217	-	hypothetical protein
805	 70.53	0	829813..830355	+	180	77462770	-	RSP_2218	-	hypothetical protein
806	 71.09	0	830390..831271	-	293	77462771	-	RSP_2219	-	putative lipid A biosynthesis lauroyl acyltransferase
807	 70.76	0	831570..832643	-	357	77462772	-	RSP_2220	-	flagellar motor switch protein (fliG)
808	 69.23	0	832703..832858	-	51	77462773	-	RSP_6042	-	hypothetical protein
809	 66.74	0	832985..834289	-	434	77462774	purB	RSP_2221	-	adenylosuccinate lyase
810	 72.38	0	834397..834711	-	104	77462775	-	RSP_2222	-	hypothetical protein
811	 69.69	0	834809..837955	-	1048	77462776	-	RSP_2223	-	AcrB/AcrD/AcrF multidrug efflux pump
812	 74.72	+1	837959..839125	-	388	77462777	-	RSP_2224	-	multidrug efflux pump, membrane fusion protein
813	 68.45	0	839367..840038	+	223	77462778	-	RSP_2225	-	hypothetical protein
814	 67.48	0	840316..842400	-	694	77462779	glgX	RSP_2226	-	glycosidase
815	 72.28	0	842397..843626	-	409	77462780	glgC	RSP_2227	-	ADP-glucose pyrophosphorylase
816	 68.17	0	844096..844626	-	176	77462781	-	RSP_2228	-	PAS domain-containing protein
817	 67.81	0	844698..848210	+	1170	77462782	-	RSP_2229	-	methylesterase CheB/methylase CheR
818	 68.57	0	848230..848544	+	104	77462783	-	RSP_2230	-	response regulator receiver domain-containing protein
819	 65.88	0	848771..849025	+	84	77462784	-	RSP_2231	-	hypothetical protein
820	 72.00	0	849420..850844	-	474	77462785	-	RSP_2232	-	putative uracil-DNA glycosylase
821	 67.65	0	850877..852097	-	406	77462786	-	RSP_2234	-	DNA-binding protein
822	 73.29	+1	852180..853220	-	346	77462787	-	RSP_2235	-	hypothetical protein
823	 69.23	0	853322..853789	+	155	77462788	-	RSP_2236	-	MarR family transcriptional regulator
824	 71.64	0	853786..854892	+	368	77462789	-	RSP_2237	-	membrane fusion protein (MFP) family protein
825	 66.99	0	854906..856429	+	507	77462790	-	RSP_2238	-	major facilitator superfamily multidrug-efflux transporter
826	 70.74	0	857218..858003	+	261	77462791	-	RSP_2239	-	tRNA/rRNA metyltransferase
827	 70.02	0	858192..858638	+	148	77462792	-	RSP_2240	-	hypothetical protein
828	 70.51	0	858840..859151	-	103	77462793	hisE	RSP_2241	-	phosphoribosyl-ATP pyrophosphatase
829	 69.95	0	859148..859909	-	253	77462794	hisF	RSP_2242	-	imidazole glycerol phosphate synthase subunit HisF
830	 73.19	+1	860044..860763	-	239	77462795	hisA	RSP_2243	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
831	 70.87	0	860903..861283	+	126	77462796	-	RSP_2244	-	hypothetical protein
832	 68.70	0	861508..862146	-	212	77462797	hisH	RSP_2245	-	imidazole glycerol phosphate synthase subunit HisH
833	 68.03	0	862146..862733	-	195	77462798	hisB	RSP_2246	-	imidazoleglycerol-phosphate dehydratase
834	 69.60	0	862970..864979	+	669	77462799	fusA	RSP_2247	-	elongation factor G
835	 71.33	0	865112..866332	-	406	77462800	-	RSP_2249	-	major facilitator superfamily multidrug-efflux transporter
836	 72.84	0	866363..867091	-	242	77462801	-	RSP_2250	-	hypothetical protein
837	 70.72	0	867084..867872	-	262	77462802	-	RSP_2251	-	3-oxoadipate enol-lactonase
838	 74.85	+1	868100..869077	-	325	77462803	-	RSP_2252	-	L-threonine ammonia-lyase
839	 71.76	0	869074..869898	-	274	77462804	-	RSP_2253	-	hydrolase or acyltransferase
840	 69.55	0	870307..872043	+	578	77462805	-	RSP_2254	-	ABC efflux transporter, fused ATPase and inner membrane subunits
841	 68.20	0	872149..874038	+	629	77462806	-	RSP_2255	-	acyl-CoA synthetase
842	 71.92	0	874411..874848	-	145	77462807	dtd	RSP_2256	-	D-tyrosyl-tRNA deacylase
843	 73.29	+1	874848..875768	-	306	77462808	-	RSP_2257	-	putative fructokinase
844	 68.65	0	875782..876741	-	319	77462809	hemH	RSP_2258	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
845	 74.89	+1	876808..877245	-	145	77462810	-	RSP_2259	-	transmembrane protein
846	 72.50	0	877250..878347	-	365	77462811	ydjG	RSP_2260	-	hypothetical protein
847	 69.01	0	878349..879458	-	369	77462812	ydjI	RSP_2261	-	antifreeze protein, type I
848	 66.35	0	879639..880277	-	212	77462813	-	RSP_2262	-	hypothetical protein
849	 70.39	0	880293..881258	-	321	77462814	-	RSP_2263	-	hypothetical protein
850	 69.19	0	881271..882461	-	396	77462815	telA	RSP_2264	-	tellurite resistance protein
851	 72.92	0	882610..883488	-	292	77462816	-	RSP_2265	-	hypothetical protein
852	 75.77	+1	883673..885199	-	508	77462817	rluB	RSP_2266	-	pseudouridine synthase,
853	 75.06	+1	885533..885985	+	150	77462818	-	RSP_2267	-	hypothetical protein
854	 66.09	0	885996..886688	-	230	77462819	-	RSP_2268	-	metallo beta lactamase superfamily protein
855	 73.06	+1	886751..887407	+	218	77462820	-	RSP_6222	-	hypothetical protein
856	 67.36	0	887451..887738	+	95	77462821	gatC	RSP_6043	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
857	 69.04	0	887735..889210	+	491	77462822	gatA	RSP_2270	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
858	 71.16	0	889158..890048	+	296	77462823	-	RSP_2271	-	hypothetical protein
859	 73.96	+1	890052..890723	+	223	77462824	ampD	RSP_2272	-	N-acetylmuramoyl-L-alanine amidase
860	 70.56	0	891211..892443	-	410	77462825	-	RSP_2273	-	putative anaerobic phenylacetate CoA ligase
861	 66.06	0	892440..893270	-	276	77462826	-	RSP_2274	-	branched chain amino acid ABC transporter ATPase
68.78	MEAN

4.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.