IslandPathversion 1.0

IslandPath Analysis: Rhodobacter sphaeroides 2.4.1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No rRNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 68.78 STD DEV: 4.15
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence - 1..3188609
3022 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1862	 56.50	-2	1982612..1982788	-	58	77463827	pufA	RSP_0258	-	LHI alpha, light-harvesting B875 protein
1863	 58.00	-2	1982802..1982951	-	49	77463828	pufB	RSP_6108	-	LHI beta, light-harvesting B875 subunit
1864	 57.14	-2	1982953..1983015	-	20	77463829	pufK	RSP_6109	-	transcriptional regulatory protein pufK
1865	 66.24	0	1983082..1983315	-	77	77463830	pufQ	RSP_0259	-	protein pufQ
1866	 66.06	0	1983312..1984787	-	491	77463831	bchZ	RSP_0260	-	putative chlorophyllide reductase, BchZ subunit
1867	 70.84	0	1984787..1986295	-	502	77463832	bchY	RSP_0261	-	chlorophyllide reductase, BchY subunit
1868	 65.97	0	1986371..1987372	-	333	77463833	bchX	RSP_0262	-	chlorophyllide reductase, BchX subunit
1869	 69.91	0	1987369..1988325	-	318	77463834	bchC	RSP_0263	-	chlorophyll synthesis pathway, bchC
1870	 71.58	0	1988478..1989617	-	379	77463835	crtF	RSP_0264	-	hydroxyneurosporene-O-methyltransferase
1871	 71.86	0	1989670..1990536	-	288	77463836	crtE	RSP_0265	-	farnesyl-diphosphate synthase
1872	 73.05	+1	1990681..1992168	+	495	77463837	crtD	RSP_0266	-	methoxyneurosporene dehydrogenase
1873	 71.19	0	1992234..1993073	+	279	77463838	ctrC	RSP_0267	-	hydroxyneurosporene synthase
1874	 65.83	0	1993234..1993710	-	158	77463839	tspO	RSP_0269	-	tryptophan rich sensory protein
1875	 72.57	0	1993742..1994809	-	355	77463840	crtB	RSP_0270	-	phytoene synthase
1876	 67.24	0	1994806..1996362	-	518	77463841	crtI	RSP_0271	-	phytoene dehydrogenase
1877	 67.59	0	1996520..1997494	+	324	77463842	crtA	RSP_0272	-	spheroidene monooxygenase
1878	 70.65	0	1997499..1998503	+	334	77463843	bchI	RSP_0273	-	magnesium chelatase subunit I
1879	 76.52	+1	1998500..2000194	+	564	77463844	bchD	RSP_0274	-	magnesium chelatase subunit D
1880	 71.40	0	2000197..2001063	+	288	77463845	bchO	RSP_0275	-	magnesium-chelatase, BchO
1881	 68.35	0	2001312..2001845	-	177	77463846	-	RSP_0276	-	isopentenyl-diphosphate delta-isomerase
1882	 67.43	0	2001848..2003032	-	394	77463847	bchP	RSP_0277	-	geranylgeranyl hydrogenase
1883	 71.18	0	2003035..2004318	-	427	77463848	-	RSP_0278	-	putative light-harvesting 1 (B870) complex assembly protein PucC
1884	 68.43	0	2004315..2005223	-	302	77463849	bchG	RSP_0279	-	bacteriochlorophyll/chlorophyll a synthase
1885	 72.14	0	2005297..2005917	-	206	77463850	bchJ	RSP_0280	-	bacteriochlorophyll synthase, 23 kDa subunit (bchJ)
1886	 65.04	0	2005924..2007762	-	612	77463851	bchE	RSP_0281	-	magnesium-protoporphyrin IX monomethylester oxidative cyclase, 66 kDa subunit(bchE)
1887	 68.03	0	2007910..2009304	-	464	77463852	ppsR	RSP_0282	-	transcriptional regulator PpsR
1888	 68.05	0	2009363..2010157	-	264	77463853	ppaA	RSP_0283	-	regulatory protein, PpaA
1889	 66.46	0	2010530..2011012	+	160	77463854	bchF	RSP_0284	-	2-vinyl bacteriochlorophyllide hydratase
1890	 71.87	0	2011009..2012295	+	428	77463855	bchN	RSP_0285	-	light-independent protochlorophyllide reductase subunit N
1891	 68.66	0	2012366..2013970	+	534	77463856	bchB	RSP_0286	-	light-independent protochlorophyllide reductase subunit B
1892	 68.98	0	2013960..2017541	+	1193	77463857	bchH	RSP_0287	-	magnesium chelatase subunit H
1893	 64.65	0	2017603..2018496	+	297	77463858	chlL	RSP_0288	-	protochlorophyllide reductase iron-sulfur ATP-binding protein
1894	 67.71	0	2018540..2019208	+	222	77463859	bchM	RSP_0289	-	Mg-protoporphyrin IX methyl transferase
1895	 70.21	0	2019205..2020644	+	479	77463860	-	RSP_0290	-	light-harvesting 1 (B870) complex assembly
1896	 66.79	0	2020663..2021445	+	260	77463861	puhA	RSP_0291	-	reaction centre H protein
1897	 71.16	0	2021573..2022217	+	214	77463862	-	RSP_0292	-	hypothetical protein
1898	 68.17	0	2022294..2022758	+	154	77463863	-	RSP_0293	-	hypothetical protein
1899	 64.31	-1	2022780..2023076	+	98	77463864	-	RSP_6110	-	hypothetical protein
1900	 64.84	0	2023073..2024164	+	363	77463865	-	RSP_0294	-	magnesium-protoporphyrin IX monomethyl ester cyclase
1901	 68.73	0	2024226..2025098	+	290	77463866	-	RSP_0295	-	hypothetical protein
1902	 64.38	-1	2025438..2025875	+	145	77463867	cycA	RSP_0296	-	cytochrome c2
1903	 66.67	0	2026281..2026979	-	232	77463868	-	RSP_0297	-	ABC branched chain amino acid transporter, ATPase subunit
1904	 67.07	0	2026976..2027719	-	247	77463869	-	RSP_0298	-	ABC branched chain amino acid transporter, ATPase subunit
1905	 69.10	0	2027716..2028948	-	410	77463870	-	RSP_0299	-	ABC branched chain amino acid transporter, inner membrane subunit
1906	 70.55	0	2029315..2031243	-	642	77463871	-	RSP_0300	-	ABC branched chain amino acid transporter, inner membrane subunit
1907	 62.61	-1	2031307..2032587	-	426	77463872	-	RSP_0301	-	ABC branched chain amino acid transporter, substrate binding protein
1908	 69.23	0	2032887..2033510	-	207	77463873	ureG	RSP_0302	-	urease accessory protein G
1909	 74.88	+1	2033507..2034139	-	210	77463874	ureF	RSP_0303	-	urease accessory protein UreF
1910	 71.22	0	2034136..2034684	-	182	77463875	ureE	RSP_0304	-	urease accessory protein UreE
1911	 70.24	0	2034681..2035100	-	139	77463876	-	RSP_0305	-	hypothetical protein
1912	 67.96	0	2035102..2036808	-	568	77463877	ureC	RSP_6111	-	urease subunit alpha
1913	 69.76	0	2036968..2037840	+	290	77463878	-	RSP_0306	-	class I diheme cytochrome c
1914	 72.01	0	2037896..2038213	-	105	77463879	-	RSP_0307	-	antifreeze protein, type I
1915	 63.73	-1	2038238..2038543	-	101	77463880	ureB	RSP_0308	-	urease subunit beta
1916	 65.02	0	2038594..2038896	-	100	77463881	ureA	RSP_0309	-	urease subunit gamma
1917	 75.85	+1	2038908..2039735	-	275	77463882	ureD	RSP_0310	-	urease accessory protein UreD
1918	 72.94	+1	2039862..2040977	+	371	77463883	-	RSP_0311	-	putative aminotransferase protein
1919	 73.46	+1	2041012..2042322	+	436	77463884	-	RSP_0312	-	aminotransferase
1920	 61.07	-1	2042383..2042757	+	124	77463885	-	RSP_0313	-	hypothetical protein
1921	 63.46	-1	2042750..2042905	+	51	77463886	pucB	RSP_0314	-	LHII beta, light-harvesting B800/850 protein
1922	 63.64	-1	2042921..2043085	+	54	77463887	pucA	RSP_6256	-	LHII alpha, light-harvesting B800/850 protein
1923	 69.20	0	2043280..2044659	+	459	77463888	pucC	RSP_0315	-	light-harvesting 1 (B870) complex assembly
1924	 66.20	0	2045159..2045800	+	213	77463889	-	RSP_0316	-	LuxR family transcriptional regulator
1925	 66.96	0	2045850..2047208	-	452	77463890	hemN	RSP_0317	-	coproporphyrinogen III oxidase
1926	 71.70	0	2047282..2047977	-	231	77463891	-	RSP_0318	-	hypothetical protein
1927	 68.47	0	2047974..2048195	-	73	77463892	-	RSP_0319	-	NnrU
1928	 70.69	0	2048192..2048365	-	57	77463893	NnrT	RSP_0320	-	hypothetical protein
1929	 72.00	0	2048367..2050241	-	624	77463894	norD	RSP_0321	-	NorD nitric oxide reductase activation protein
1930	 67.92	0	2050246..2051043	-	265	77463895	norQ	RSP_0322	-	NorQ protein required for nitric oxide reductase activity
1931	 63.31	-1	2051040..2052380	-	446	77463896	norB	RSP_0323	-	nitric oxide reductase large subunit, cytochrome b
1932	 66.00	0	2052394..2052846	-	150	77463897	norC	RSP_0324	-	nitric oxide reductase subunit C, cytochrome c
1933	 70.53	0	2052996..2053202	+	68	77463898	-	RSP_0325	-	hypothetical protein
1934	 73.74	+1	2053376..2053912	+	178	77463899	-	RSP_0326	-	hypothetical protein
1935	 69.80	0	2053920..2054621	-	233	77463900	nnrR	RSP_0327	-	Crp/FNR family transcriptional regulator
1936	 69.85	0	2054833..2056026	+	397	77463901	nnrS	RSP_0328	-	hypothetical protein
1937	 68.15	0	2056160..2057170	+	336	77463902	-	RSP_0329	-	diguanylate cyclase with GAF sensor
1938	 70.62	0	2057186..2057590	-	134	77463903	-	RSP_0330	-	hypothetical protein
1939	 74.17	+1	2057613..2059451	-	612	77463904	-	RSP_0331	-	hypothetical protein
1940	 71.58	0	2059448..2061625	-	725	77463905	-	RSP_0332	-	cellulose synthase
1941	 68.99	0	2061625..2063991	-	788	77463906	-	RSP_0333	-	cellulose synthase
1942	 72.47	0	2064025..2064696	-	223	77463907	-	RSP_0334	-	hypothetical protein
1943	 70.51	0	2065080..2067449	+	789	77463908	-	RSP_0335	-	diguanylate cyclase/phosphodiesterase
1944	 69.34	0	2067539..2068360	-	273	77463909	-	RSP_0337	-	phospodiesterase
1945	 69.61	0	2068357..2069274	-	305	77463910	-	RSP_0338	-	hypothetical protein
1946	 69.82	0	2069349..2069918	-	189	77463911	-	RSP_0339	-	hypothetical protein
1947	 68.43	0	2070079..2071101	-	340	77463912	-	RSP_0340	-	hypothetical protein
1948	 69.17	0	2071291..2072568	-	425	77463913	-	RSP_0341	-	cytosine deaminase
1949	 69.73	0	2072568..2073515	-	315	77463914	-	RSP_0342	-	putative ABC sugar transporter, inner membrane subunit
1950	 71.65	0	2073607..2074650	-	347	77463915	-	RSP_0343	-	putative ABC sugar transporter, inner membrane subunit
1951	 70.94	0	2074640..2076160	-	506	77463916	-	RSP_0344	-	putative ABC sugar transporter, fused ATPase subunits
1952	 67.76	0	2076157..2077161	-	334	77463917	-	RSP_0345	-	ABC transporter periplasmic-binding protein
1953	 67.57	0	2077432..2078532	+	366	77463918	-	RSP_0346	-	ABC transporter, substrate binding protein
1954	 66.89	0	2078687..2079568	+	293	77463919	-	RSP_0347	-	ABC transporter, inner membrane subunit
1955	 65.03	0	2079565..2080356	+	263	77463920	-	RSP_0348	-	ABC transporter, inner membrane subunit
1956	 69.69	0	2080373..2081431	+	352	77463921	-	RSP_0349	-	ABC transporter, ATPase subunit
1957	 69.39	0	2081485..2081925	+	146	77463922	-	RSP_0350	-	hypothetical protein
1958	 70.05	0	2081929..2082993	+	354	77463923	-	RSP_0351	-	D-threo-aldose 1-dehydrogenase
1959	 63.58	-1	2083151..2083474	-	107	77463924	-	RSP_0352	-	ferredoxin
1960	 72.63	0	2084288..2084740	+	150	77463925	-	RSP_0354	-	hypothetical protein
1961	 68.49	0	2084795..2086276	-	493	77463926	-	RSP_0355	-	serine protease
68.78	MEAN

4.15	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.