IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3322	 54.68	-2	3566782..3567891	-	369	86358991	-	RHE_CH03393	-	acetyltransferase protein
3323	 60.32	0	3568090..3570420	+	776	86358992	-	RHE_CH03394	-	putative pyrroloquinoline-quinone-dependent quinate dehydrogenase protein
3324	 62.69	0	3570443..3570769	+	108	86358993	-	RHE_CH03395	-	multicopper oxidase protein
3325	 52.80	-2	3570933..3571307	+	124	86358994	-	RHE_CH03396	-	hypothetical protein
3326	 60.49	0	3571321..3571644	+	107	86358995	-	RHE_CH03397	-	hypothetical protein
3327	 64.90	+1	3578532..3578870	+	112	86358996	-	RHE_CH03404	-	hypothetical protein
3328	 59.42	0	3579009..3579215	+	68	86358997	-	RHE_CH03405	-	hypothetical protein
3329	 62.51	0	3579236..3580174	+	312	86358998	-	RHE_CH03406	-	pseudouridylate synthase, ribosomal large subunit protein
3330	 65.23	+1	3580189..3580884	+	231	86358999	-	RHE_CH03407	-	phosphoribosyltransferase
3331	 62.59	0	3581024..3582766	+	580	86359000	-	RHE_CH03408	-	cation transporter protein
3332	 59.15	0	3582852..3583796	+	314	86359001	purC2	RHE_CH03409	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
3333	 60.86	0	3583906..3584508	+	200	86359002	-	RHE_CH03410	-	TetR family transcriptional regulator
3334	 63.20	0	3584663..3585874	+	403	86359003	-	RHE_CH03411	-	HlyD family protein secretion protein
3335	 60.88	0	3585922..3589032	+	1036	86359004	-	RHE_CH03412	-	multidrug ABC transporter
3336	 63.33	0	3589184..3590620	+	478	86359005	nodTch	RHE_CH03413	-	nodulation protein (outer membrane efflux protein)
3337	 63.03	0	3590784..3591827	+	347	86359006	-	RHE_CH03414	-	LacI family transcription regulator
3338	 60.12	0	3591829..3592851	+	340	86359007	potD	RHE_CH03415	-	spermidine/putrescine ABC transporter, substrate-binding protein
3339	 62.44	0	3592914..3593741	+	275	86359008	potB	RHE_CH03416	-	spermidine/putrescine ABC transporter, permease component I protein
3340	 62.05	0	3593738..3594517	+	259	86359009	potC	RHE_CH03417	-	spermidine/putrescine ABC transporter, permease component II protein
3341	 65.01	+1	3594510..3595535	+	341	86359010	potA	RHE_CH03418	-	spermidine/putrescine ABC transporter, ATP-binding protein
3342	 66.45	+1	3595540..3596460	+	306	86359011	-	RHE_CH03419	-	inosine-uridine preferring nucleoside hydrolase protein
3343	 66.11	+1	3596457..3598244	+	595	86359012	adeC2	RHE_CH03420	-	adenine deaminase protein
3344	 60.09	0	3598605..3599774	+	389	86359013	-	RHE_CH03421	-	hypothetical protein
3345	 59.44	0	3599753..3601384	-	543	86359014	-	RHE_CH03422	-	hypothetical protein
3346	 60.13	0	3601333..3603030	-	565	86359015	-	RHE_CH03423	-	hypothetical protein
3347	 62.53	0	3602964..3603713	-	249	86359016	-	RHE_CH03424	-	short chain dehydrogenase
3348	 61.38	0	3603710..3605032	-	440	86359017	-	RHE_CH03425	-	putative oxidoreductase protein
3349	 56.94	-1	3605040..3605471	-	143	86359018	-	RHE_CH03426	-	hypothetical protein
3350	 58.33	-1	3605481..3607232	-	583	86359019	-	RHE_CH03427	-	putative integral membrane prenyltransferase protein
3351	 58.35	-1	3607323..3609221	+	632	86359020	-	RHE_CH03428	-	di- and tricarboxylate transporter protein
3352	 63.59	0	3609312..3610481	-	389	86359021	-	RHE_CH03429	-	hippurate hydrolase protein
3353	 62.09	0	3610681..3612189	-	502	86359022	-	RHE_CH03430	-	hypothetical protein
3354	 59.52	0	3612196..3612657	-	153	86359023	-	RHE_CH03431	-	hypothetical protein
3355	 62.91	0	3612863..3613846	-	327	86359024	-	RHE_CH03432	-	hypothetical protein
3356	 65.09	+1	3614095..3615429	-	444	86359025	-	RHE_CH03433	-	two-component response regulator protein
3357	 63.06	0	3615426..3617393	-	655	86359026	-	RHE_CH03434	-	two-component sensor histidine kinase protein
3358	 63.20	0	3617406..3618068	+	220	86359027	-	RHE_CH03435	-	oxidoreductase protein
3359	 60.42	0	3618053..3618676	-	207	86359028	-	RHE_CH03436	-	hypothetical protein
3360	 63.54	0	3618676..3619410	-	244	86359029	-	RHE_CH03437	-	hypothetical protein
3361	 61.43	0	3619525..3619734	-	69	86359030	-	RHE_CH03438	-	hypothetical protein
3362	 64.14	0	3619965..3620519	+	184	86359031	-	RHE_CH03439	-	putative phosphoglycerate mutase protein
3363	 60.88	0	3620945..3622516	+	523	86359032	-	RHE_CH03440	-	putative sensory box/GGDEF family protein
3364	 64.97	+1	3622671..3623849	+	392	86359033	ackA	RHE_CH03441	-	acetate kinase
3365	 61.85	0	3623921..3626308	+	795	86359034	-	RHE_CH03442	-	putative phosphoketolase
3366	 59.03	0	3626357..3627247	-	296	86359035	pobR	RHE_CH03443	-	AraC family transcriptional regulator
3367	 61.45	0	3627348..3628535	+	395	86359036	pobA	RHE_CH03444	-	4-hydroxybenzoate 3-monooxygenase
3368	 62.83	0	3628721..3629893	+	390	86359037	-	RHE_CH03445	-	putative branched-chain amino acid ABC transporter, substrate-binding protein
3369	 61.90	0	3630089..3630823	+	244	86359038	-	RHE_CH03446	-	branched chain amino acid ABC transporter permease
3370	 62.19	0	3630825..3631829	+	334	86359039	-	RHE_CH03447	-	branched chain amino acid ABC transporter permease
3371	 62.22	0	3631826..3632590	+	254	86359040	-	RHE_CH03448	-	branched chain amino acid ABC transporter ATP-binding protein
3372	 64.99	+1	3632571..3633287	+	238	86359041	-	RHE_CH03449	-	branched chain amino acid ABC transporter ATP-binding protein
3373	 56.04	-1	3633618..3634445	+	275	86359042	rapB3	RHE_CH03450	-	autoaggregation protein (adhering protein)
3374	 64.71	0	3635085..3636311	-	408	86359043	trmU	RHE_CH03452	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3375	 59.55	0	3636781..3637047	+	88	86359044	-	RHE_CH03453	-	hypothetical protein
3376	 60.96	0	3637128..3638723	-	531	86359045	serA	RHE_CH03454	-	D-3-phosphoglycerate dehydrogenase
3377	 63.44	0	3638806..3639984	-	392	86359046	serC	RHE_CH03455	-	phosphoserine aminotransferase
3378	 62.74	0	3640175..3641014	-	279	86359047	-	RHE_CH03456	-	heat resistant agglutinin 1 protein
3379	 62.23	0	3641273..3642625	-	450	86359048	-	RHE_CH03457	-	phosphosugar isomerase protein
3380	 61.39	0	3642867..3644798	-	643	86359049	ftsH	RHE_CH03458	-	cell division metalloproteinase protein
3381	 62.42	0	3644896..3646356	-	486	86359050	-	RHE_CH03459	-	putative cell cycle protein MesJ/cytosine deaminase-related protein
3382	 62.13	0	3646368..3647117	-	249	86359051	-	RHE_CH03460	-	hypothetical protein
3383	 64.99	+1	3647517..3648053	-	178	86359052	omp2	RHE_CH03461	-	outer membrane lipoprotein
3384	 62.09	0	3648205..3649515	-	436	86359053	tolB	RHE_CH03462	-	translocation protein TolB
3385	 52.51	-2	3649538..3649975	-	145	86359054	-	RHE_CH03463	-	putative signal peptide protein
3386	 58.53	0	3649976..3651118	-	380	86359055	tolA	RHE_CH03464	-	signal peptide protein
3387	 62.94	0	3651127..3651582	-	151	86359056	tolR	RHE_CH03465	-	protein transporter protein
3388	 62.92	0	3651601..3652320	-	239	86359057	tolQ	RHE_CH03466	-	protein transporter protein
3389	 61.84	0	3652686..3653141	-	151	86359058	-	RHE_CH03467	-	4-hydroxybenzoyl-CoA thioesterase protein
3390	 59.87	0	3653305..3654525	+	406	86359059	sqdB	RHE_CH03468	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein
3391	 59.27	0	3654721..3655545	+	274	86359060	sqdD	RHE_CH03469	-	glycosyltransferase (sulfolipid biosynthesis) protein
3392	 64.64	0	3655620..3656507	+	295	86359061	sqdC	RHE_CH03470	-	sulfolipid biosynthesis protein
3393	 61.86	0	3656537..3657181	+	214	86359062	-	RHE_CH03471	-	5-formyltetrahydrofolate cyclo-ligase protein
3394	 63.55	0	3657209..3658009	+	266	86359063	-	RHE_CH03472	-	hypothetical protein
3395	 59.50	0	3658231..3658956	+	241	86359064	-	RHE_CH03473	-	hypothetical protein
3396	 57.14	-1	3658987..3659532	-	181	86359065	-	RHE_CH03474	-	hypothetical protein
3397	 59.97	0	3659632..3660378	+	248	86359066	-	RHE_CH03475	-	hypothetical protein
3398	 63.37	0	3660596..3661597	-	333	86359067	-	RHE_CH03476	-	oxidoreductase protein
3399	 62.48	0	3661721..3664036	-	771	86359068	-	RHE_CH03477	-	methyl-accepting chemotaxis protein
3400	 61.76	0	3664279..3664788	+	169	86359069	ruvC	RHE_CH03478	-	Holliday junction resolvase
3401	 57.58	-1	3664843..3665106	+	87	86359070	-	RHE_CH03479	-	putative regulator protein of stationary/sporulation gene expression
3402	 60.43	0	3665087..3665503	+	138	86359071	-	RHE_CH03480	-	putative nucleic acid-binding protein
3403	 65.04	+1	3665517..3666131	+	204	86359072	ruvA	RHE_CH03481	-	Holliday junction DNA helicase motor protein
3404	 64.36	0	3666214..3667254	+	346	86359073	ruvB	RHE_CH03482	-	Holliday junction DNA helicase B
3405	 62.54	0	3667309..3668157	+	282	86359074	-	RHE_CH03483	-	phosphohydrolase protein
3406	 60.11	0	3668523..3669086	+	187	86359075	-	RHE_CH03484	-	hypothetical protein
3407	 61.46	0	3669164..3670546	-	460	86359076	atvA	RHE_CH03485	-	acid tolerance and virulence protein
3408	 61.79	0	3670543..3673146	-	867	86359077	-	RHE_CH03486	-	hypothetical protein
3409	 61.82	0	3673370..3675517	-	715	86359078	-	RHE_CH03487	-	small-conductance mechanosensitive channel transmembrane protein
3410	 63.47	0	3675696..3676727	-	343	86359079	-	RHE_CH03488	-	6-phosphogluconate dehydrogenase-like protein
3411	 61.28	0	3676843..3677325	-	160	86359080	-	RHE_CH03489	-	hypothetical protein
3412	 61.01	0	3677381..3677716	+	111	86359081	-	RHE_CH03490	-	ArsR family transcriptional regulator
3413	 65.36	+1	3677794..3678330	+	178	86359082	-	RHE_CH03491	-	hypothetical protein
3414	 63.01	0	3678429..3679412	+	327	86359083	-	RHE_CH03492	-	putative UDP-glucose 4-epimerase protein
3415	 64.29	0	3679795..3680172	-	125	86359084	-	RHE_CH03493	-	hypothetical protein
3416	 61.96	0	3680189..3680464	-	91	86359085	-	RHE_CH03494	-	hypothetical protein
3417	 63.02	0	3680825..3682771	+	648	86359086	tkt	RHE_CH03495	-	transketolase
3418	 63.20	0	3682853..3683863	+	336	86359087	gap	RHE_CH03496	-	glyceraldehyde 3-phosphate dehydrogenase protein
3419	 58.41	-1	3684003..3684317	+	104	86359088	-	RHE_CH03497	-	hypothetical protein
3420	 62.83	0	3685042..3686916	+	624	86359089	-	RHE_CH03498	-	potassium/proton antiporter
3421	 63.64	0	3686933..3688189	+	418	86359090	pgk	RHE_CH03499	-	phosphoglycerate kinase
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.