IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2777	 58.47	0	2967938..2968864	-	308	86358446	ddl	RHE_CH02843	-	D-alanine--D-alanine ligase
2778	 61.51	0	2969313..2970242	+	309	86358447	-	RHE_CH02844	-	putative UDP-glucose 4-epimerase protein
2779	 61.74	0	2970246..2971220	-	324	86358448	murB	RHE_CH02845	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2780	 61.30	0	2971217..2972632	-	471	162329635	murC	RHE_CH02846	-	UDP-N-acetylmuramate--L-alanine ligase
2781	 64.44	0	2972629..2973753	-	374	86358450	murG	RHE_CH02847	-	N-acetylglucosaminyl transferase
2782	 62.68	0	2973760..2974914	-	384	86358451	ftsW	RHE_CH02848	-	cell division protein
2783	 66.45	+1	2974916..2976328	-	470	86358452	murD	RHE_CH02849	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2784	 61.04	0	2976336..2977436	-	366	86358453	mraY	RHE_CH02850	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2785	 63.13	0	2977459..2978871	-	470	86358454	murF	RHE_CH02851	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein
2786	 64.69	0	2978895..2980415	-	506	86358455	murE	RHE_CH02852	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2787	 60.58	0	2980422..2982179	-	585	86358456	ftsI	RHE_CH02853	-	cell division penicillin-binding protein
2788	 60.93	0	2982179..2982649	-	156	86358457	-	RHE_CH02854	-	hypothetical protein
2789	 64.23	0	2982651..2983676	-	341	86358458	mraW	RHE_CH02855	-	S-adenosyl-methyltransferase MraW
2790	 59.84	0	2983694..2984323	-	209	86358459	mraZ	RHE_CH02856	-	cell division protein MraZ
2791	 61.65	0	2984997..2986172	-	391	86358460	-	RHE_CH02857	-	sarcosine oxidase protein
2792	 64.49	0	2986183..2987328	-	381	86358461	-	RHE_CH02858	-	sarcosine oxidase protein
2793	 56.41	-1	2987487..2988110	-	207	86358462	-	RHE_CH02859	-	transglycosylase protein
2794	 61.04	0	2988371..2989045	-	224	86358463	-	RHE_CH02860	-	N-acetylmuramoyl-L-alanine amidase protein
2795	 58.47	0	2989129..2989836	-	235	86358464	djlA	RHE_CH02861	-	DnaJ family molecular chaperone
2796	 61.80	0	2990227..2991438	+	403	86358465	pfk	RHE_CH02862	-	pyrophosphate--fructose-6-phosphate 1-phosphotransferase
2797	 63.05	0	2991497..2992132	+	211	86358466	-	RHE_CH02863	-	amino acid efflux LysE family protein
2798	 62.63	0	2992278..2993219	+	313	86358467	-	RHE_CH02864	-	transglycosylase protein
2799	 65.40	+1	2993266..2994687	-	473	86358468	-	RHE_CH02865	-	putative 6-aminohexanoate-dimer hydrolase protein
2800	 60.96	0	2994881..2996125	+	414	86358469	-	RHE_CH02866	-	hypothetical protein
2801	 60.89	0	2996122..2996796	+	224	86358470	-	RHE_CH02867	-	SAM-dependent methyltransferase protein
2802	 59.77	0	2996924..2997721	+	265	86358471	lyc	RHE_CH02868	-	glycoside hydrolase protein
2803	 65.68	+1	2997803..2999023	+	406	86358472	-	RHE_CH02869	-	membrane-bound lytic murein transglycosylase protein
2804	 64.24	0	2999152..3000057	+	301	86358473	-	RHE_CH02870	-	putative permease protein
2805	 62.57	0	3000512..3001414	-	300	86358474	metF	RHE_CH02871	-	5,10-methylenetetrahydrofolate reductase protein
2806	 65.11	+1	3001416..3002444	-	342	86358475	-	RHE_CH02872	-	ArsR family methyltransferase transcriptional regulator
2807	 61.33	0	3002606..3004255	-	549	86358476	-	RHE_CH02873	-	putative ABC transporter ATP-binding protein
2808	 63.16	0	3004354..3005094	-	246	86358477	-	RHE_CH02874	-	ribonuclease
2809	 64.09	0	3005318..3006247	+	309	86358478	-	RHE_CH02875	-	putative lysophospholipase protein
2810	 60.71	0	3006282..3007238	+	318	86358479	-	RHE_CH02876	-	putative transporter, permease protein
2811	 62.98	0	3007345..3008457	+	370	86358480	-	RHE_CH02877	-	acyl-CoA transferases/L-carnitine dehydratase protein
2812	 63.77	0	3008454..3010112	+	552	86358481	ilvG	RHE_CH02878	-	acetolactate synthase 2 catalytic subunit
2813	 62.61	0	3010153..3010497	-	114	86358482	-	RHE_CH02879	-	putative translation initiation inhibitor protein
2814	 59.88	0	3010570..3010908	-	112	86358483	-	RHE_CH02880	-	hypothetical protein
2815	 63.69	0	3010980..3011819	-	279	86358484	-	RHE_CH02881	-	hypothetical protein
2816	 63.24	0	3012075..3013475	+	466	86358485	-	RHE_CH02882	-	hypothetical protein
2817	 61.34	0	3013550..3014338	-	262	86358486	parA1	RHE_CH02883	-	chromosome partitioning protein A
2818	 62.86	0	3014476..3015735	-	419	86358487	-	RHE_CH02884	-	alcohol dehydrogenase protein
2819	 62.19	0	3015627..3017012	-	461	86358488	-	RHE_CH02885	-	aldehyde dehydrogenase
2820	 59.14	0	3017220..3018587	-	455	86358489	glnA3	RHE_CH02886	-	glutamine synthetase protein
2821	 59.77	0	3018734..3020284	-	516	86358490	-	RHE_CH02887	-	amino acid transporter protein
2822	 60.89	0	3020400..3021092	-	230	86358491	-	RHE_CH02888	-	putative N-formylglutamate amidohydrolase protein
2823	 59.55	0	3021274..3022215	+	313	86358492	-	RHE_CH02889	-	RpiR family transcriptional regulator
2824	 59.78	0	3022404..3023507	+	367	86358493	-	RHE_CH02890	-	ABC transporter substrate-binding protein
2825	 60.63	0	3023579..3024472	+	297	86358494	-	RHE_CH02891	-	ABC transporter permease
2826	 60.46	0	3024469..3025257	+	262	86358495	-	RHE_CH02892	-	ABC transporter permease
2827	 61.77	0	3025270..3026331	+	353	86358496	-	RHE_CH02893	-	ABC transporter ATP-binding protein
2828	 62.52	0	3026407..3027492	-	361	86358497	-	RHE_CH02894	-	sugar ABC transporter, ATP-binding protein
2829	 62.43	0	3027419..3028480	-	353	86358498	-	RHE_CH02895	-	oxidoreductase protein
2830	 61.67	0	3028477..3029316	-	279	86358499	-	RHE_CH02896	-	sugar ABC transporter, permease protein
2831	 60.02	0	3029326..3030273	-	315	86358500	-	RHE_CH02897	-	sugar ABC transporter, permease protein
2832	 60.48	0	3030489..3031748	-	419	86358501	-	RHE_CH02898	-	sugar ABC transporter, substrate-binding protein
2833	 64.18	0	3032279..3033163	+	294	86358502	-	RHE_CH02899	-	putative N-acetylglucosamine kinase protein
2834	 66.80	+1	3033160..3033918	+	252	86358503	-	RHE_CH02900	-	transcriptional regulator protein
2835	 62.60	0	3034038..3037853	-	1271	86358504	metH	RHE_CH02901	-	B12-dependent methionine synthase
2836	 64.05	0	3037981..3039240	+	419	86358505	-	RHE_CH02902	-	hypothetical protein
2837	 60.61	0	3039305..3039799	-	164	86358506	-	RHE_CH02903	-	hypothetical protein
2838	 62.75	0	3039888..3040499	-	203	86358507	-	RHE_CH02904	-	putative flavin reductase protein
2839	 67.88	+1	3040504..3041247	-	247	86358508	-	RHE_CH02905	-	hydantoin racemase protein
2840	 61.44	0	3041249..3042070	-	273	86358509	-	RHE_CH02906	-	spermidine/putrescine ABC transporter permease
2841	 59.23	0	3042072..3042986	-	304	86358510	-	RHE_CH02907	-	spermidine/putrescine ABC transporter permease
2842	 61.28	0	3043250..3044548	-	432	86358511	-	RHE_CH02908	-	spermidine/putrescine ABC transporter substrate-binding protein
2843	 63.64	0	3044594..3045682	-	362	86358512	-	RHE_CH02909	-	spermidine/putrescine ABC transporter ATP-binding protein
2844	 62.73	0	3045950..3046660	+	236	86358513	-	RHE_CH02910	-	GntR family transcriptional regulator
2845	 61.17	0	3046666..3047193	+	175	86358514	-	RHE_CH02911	-	hypothetical protein
2846	 61.46	0	3047321..3047704	-	127	86358515	-	RHE_CH02912	-	hypothetical protein
2847	 68.75	+2	3048283..3048522	+	79	86358516	-	RHE_CH02913	-	hypothetical protein
2848	 57.41	-1	3049012..3049335	+	107	86358517	-	RHE_CH02914	-	hypothetical protein
2849	 59.13	0	3049275..3050057	+	260	86358518	cinRch	RHE_CH02915	-	autoinducer transcriptional regulator protein
2850	 61.56	0	3050272..3050937	+	221	86358519	cinI	RHE_CH02916	-	N-acyl-L-homoserine lactone (AHL) synthase protein
2851	 58.80	0	3051257..3051790	-	177	86358520	-	RHE_CH02917	-	two-component response regulator protein
2852	 54.65	-2	3051864..3053078	-	404	86358521	-	RHE_CH02919	-	integrase/recombinase protein
2853	 54.65	-2	3053075..3053332	-	85	86358522	-	RHE_CH02920	-	hypothetical protein
2854	 54.79	-2	3053334..3053552	-	72	86358523	-	RHE_CH02921	-	hypothetical protein
2855	 54.14	-2	3053775..3054269	+	164	86358524	-	RHE_CH02922	-	hypothetical protein
2856	 54.05	-2	3054572..3055435	-	287	86358525	-	RHE_CH02923	-	hypothetical protein
2857	 51.52	-2	3055532..3056515	-	327	86358526	-	RHE_CH02924	-	hypothetical protein
2858	 46.26	-2	3056914..3058050	-	378	86358527	-	RHE_CH02925	-	hypothetical protein
2859	 52.16	-2	3058230..3058622	-	130	86358528	-	RHE_CH02926	-	hypothetical protein
2860	 60.67	0	3058900..3060984	-	694	86358529	-	RHE_CH02927	-	Clp protease protein
2861	 60.50	0	3060938..3061294	-	118	86358530	-	RHE_CH02928	-	hypothetical protein
2862	 62.71	0	3061354..3061656	-	100	86358531	-	RHE_CH02929	-	hypothetical protein
2863	 58.79	0	3061807..3062631	-	274	86358532	-	RHE_CH02930	-	hypothetical protein
2864	 52.13	-2	3063061..3063342	+	93	86358533	-	RHE_CH02931	-	hypothetical protein
2865	 55.78	-1	3063580..3063882	+	100	86358534	-	RHE_CH02932	-	hypothetical protein
2866	 58.37	-1	3065016..3065642	-	208	86358535	ropB2	RHE_CH02933	-	outer membrane protein
2867	 51.21	-2	3066137..3066343	-	68	86358536	-	RHE_CH02934	-	hypothetical protein
2868	 62.89	0	3066687..3067427	+	246	86358537	-	RHE_CH02935	-	hypothetical protein
2869	 65.42	+1	3067509..3068309	+	266	86358538	-	RHE_CH02936	-	hypothetical protein
2870	 66.34	+1	3068203..3068508	-	101	86358539	-	RHE_CH02937	-	hypothetical protein
2871	 65.18	+1	3068865..3069335	-	156	86358540	-	RHE_CH02938	-	hypothetical protein
2872	 61.46	0	3069387..3070001	-	204	86358541	-	RHE_CH02939	-	hypothetical protein
2873	 60.83	0	3070065..3070784	-	239	86358542	-	RHE_CH02940	-	Crp/Fnr family transcriptional regulator
2874	 59.76	0	3070917..3071162	+	81	86358543	-	RHE_CH02941	-	hypothetical protein
2875	 58.97	0	3071329..3071757	+	142	86358544	-	RHE_CH02942	-	hypothetical protein
2876	 60.90	0	3071697..3072095	-	132	86358545	-	RHE_CH02943	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.