IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2590	 66.27	+1	2766299..2766553	-	84	86358259	-	RHE_CH02653	-	hypothetical protein
2591	 51.24	-2	2766894..2767496	+	200	86358260	-	RHE_CH02654	-	hypothetical protein
2592	 61.96	0	2767515..2767790	-	91	86358261	-	RHE_CH02655	-	putative insertion sequence transposase protein
2593	 63.14	0	2768024..2770009	-	661	86358262	lacZ1	RHE_CH02656	-	beta-D-galactosidase protein
2594	 65.04	+1	2770170..2771216	-	348	86358263	-	RHE_CH02657	-	sugar ABC transporter, ATP-binding protein
2595	 62.44	0	2771353..2772204	-	283	86358264	-	RHE_CH02658	-	sugar ABC transporter, permease protein
2596	 60.56	0	2772204..2773088	-	294	86358265	-	RHE_CH02659	-	sugar ABC transporter, permease protein
2597	 62.04	0	2773440..2774714	-	424	86358266	-	RHE_CH02660	-	sugar ABC transporter, substrate-binding protein
2598	 67.18	+1	2774954..2776120	+	388	86358267	-	RHE_CH02661	-	ROK family transcriptional regulator
2599	 59.93	0	2776347..2776613	+	88	86358268	-	RHE_CH02662	-	hypothetical protein
2600	 62.53	0	2776670..2777152	+	160	86358269	-	RHE_CH02663	-	hypothetical protein
2601	 61.81	0	2777251..2777703	-	150	86358270	-	RHE_CH02664	-	hypothetical protein
2602	 65.51	+1	2777877..2778740	-	287	86358271	-	RHE_CH02665	-	putative transporter, permease protein
2603	 65.01	+1	2778944..2780335	+	463	86358272	-	RHE_CH02666	-	GntR family transcriptional regulator
2604	 56.47	-1	2780485..2780886	-	133	86358273	-	RHE_CH02667	-	putative two-component response regulator protein
2605	 58.35	-1	2780897..2782639	-	580	86358274	-	RHE_CH02668	-	putative two-component sensor histidine kinase protein
2606	 58.28	-1	2782660..2783088	+	142	86358275	-	RHE_CH02669	-	putative acetyltransferase protein
2607	 65.87	+1	2783179..2783808	-	209	86358276	-	RHE_CH02670	-	hypothetical protein
2608	 70.60	+2	2783836..2785056	-	406	86358277	-	RHE_CH02671	-	hypothetical protein
2609	 63.91	0	2785172..2785969	+	265	86358278	-	RHE_CH02672	-	hypothetical protein
2610	 66.06	+1	2785975..2786304	+	109	86358279	-	RHE_CH02673	-	hypothetical protein
2611	 66.57	+1	2786397..2787404	-	335	86358280	-	RHE_CH02674	-	short chain dehydrogenase
2612	 66.67	+1	2787686..2788708	+	340	86358281	-	RHE_CH02675	-	alkanal monooxygenase-like protein
2613	 64.27	0	2788977..2789852	+	291	86358282	-	RHE_CH02676	-	LysR family transcriptional regulator
2614	 66.83	+1	2789815..2791053	-	412	86358283	-	RHE_CH02677	-	putative efflux transporter protein
2615	 67.74	+1	2791050..2791700	-	216	86358284	-	RHE_CH02678	-	ArsR family transcriptional regulator
2616	 60.38	0	2791857..2792540	+	227	86358285	-	RHE_CH02679	-	putative methyltransferase protein
2617	 63.71	0	2792521..2793333	-	270	86358286	-	RHE_CH02680	-	ferrichrome ABC transporter ATP-binding protein
2618	 65.66	+1	2793341..2794333	-	330	86358287	-	RHE_CH02681	-	ferrichrome ABC transporter permease
2619	 65.77	+1	2794375..2795379	-	334	86358288	-	RHE_CH02682	-	ferrichrome ABC transporter permease
2620	 62.02	0	2795399..2796367	-	322	86358289	-	RHE_CH02683	-	ferrichrome ABC transporter substrate-binding protein
2621	 67.94	+1	2796471..2797568	-	365	86358290	-	RHE_CH02684	-	adenylate cyclase protein
2622	 58.44	0	2798070..2798312	-	80	86358291	-	RHE_CH02685	-	hypothetical protein
2623	 66.34	+1	2798319..2798627	-	102	86358292	-	RHE_CH02686	-	hypothetical protein
2624	 67.76	+1	2798801..2799259	-	152	86358293	-	RHE_CH02687	-	hypothetical protein
2625	 63.91	0	2799989..2800423	+	144	86358294	ribH2	RHE_CH02688	-	riboflavin synthase subunit beta
2626	 64.20	0	2800571..2801260	+	229	86358295	-	RHE_CH02689	-	putative glyoxalase protein
2627	 61.13	0	2801406..2802182	-	258	86358296	-	RHE_CH02690	-	hypothetical protein
2628	 59.47	0	2802321..2803223	-	300	86358297	-	RHE_CH02691	-	LysR family transcriptional regulator
2629	 59.50	0	2803413..2804138	+	241	86358298	-	RHE_CH02692	-	oxidoreductase protein
2630	 65.44	+1	2804132..2804620	+	162	86358299	-	RHE_CH02693	-	putative translation initiation inhibitor protein
2631	 55.49	-1	2804687..2805196	-	169	86358300	-	RHE_CH02694	-	hypothetical protein
2632	 61.83	0	2805357..2809076	+	1239	86358301	-	RHE_CH02695	-	putative exported protein, TonB-dependent receptor protein
2633	 64.64	0	2809076..2811046	+	656	86358302	cyaK	RHE_CH02696	-	adenylate cyclase protein
2634	 61.37	0	2811162..2811746	-	194	86358303	-	RHE_CH02697	-	TetR family transcriptional regulator
2635	 64.52	0	2811883..2812440	+	185	86358304	-	RHE_CH02698	-	hypothetical protein
2636	 59.94	0	2812602..2813582	+	326	86358305	-	RHE_CH02699	-	putative mRNA-binding protein
2637	 64.41	0	2813876..2814628	-	250	86358306	-	RHE_CH02700	-	putative nucleotidyltransferase protein
2638	 65.66	+1	2814898..2815593	+	231	86358307	-	RHE_CH02701	-	fumarylpyruvate hydrolase protein
2639	 63.65	0	2815604..2816134	+	176	86358308	-	RHE_CH02702	-	acetyltransferase protein
2640	 62.39	0	2816298..2816999	-	233	86358309	-	RHE_CH02703	-	putative isoprenylcysteine carboxyl methyltransferase protein
2641	 55.06	-2	2817215..2817817	-	200	86358310	-	RHE_CH02704	-	hypothetical protein
2642	 62.63	0	2817928..2818299	+	123	86358311	-	RHE_CH02705	-	hypothetical protein
2643	 57.89	-1	2818321..2818719	-	132	86358312	-	RHE_CH02706	-	hypothetical protein
2644	 60.42	0	2818789..2819364	-	191	86358313	-	RHE_CH02707	-	hypothetical protein
2645	 68.46	+2	2819522..2820637	-	371	86358314	-	RHE_CH02708	-	hypothetical protein
2646	 61.40	0	2821077..2821475	-	132	86358315	zur	RHE_CH02709	-	zinc uptake transcriptional regulator
2647	 64.82	+1	2821472..2822284	-	270	86358316	znuB	RHE_CH02710	-	zinc uptake ABC transporter, permease protein
2648	 64.00	0	2822277..2823215	-	312	86358317	znuC	RHE_CH02711	-	zinc uptake ABC transporter, ATP-binding protein
2649	 62.61	0	2823317..2824375	+	352	86358318	znuA	RHE_CH02712	-	zinc uptake ABC transporter, substrate-binding protein
2650	 63.18	0	2824514..2825719	+	401	86358319	-	RHE_CH02713	-	cobalamin synthesis protein
2651	 63.28	0	2826373..2826756	+	127	86358320	-	RHE_CH02714	-	putative glyoxalase/bleomycin resistance-like protein
2652	 62.91	0	2826850..2828181	+	443	86358321	-	RHE_CH02715	-	hemolysin protein
2653	 65.33	+1	2828182..2829603	-	473	86358322	chrA	RHE_CH02716	-	chromate transporter protein
2654	 65.69	+1	2829605..2830420	-	271	86358323	-	RHE_CH02717	-	putative superoxide dismutase SodM-like protein
2655	 55.78	-1	2831499..2831801	-	100	86358324	-	RHE_CH02718	-	hypothetical protein
2656	 63.38	0	2832608..2833519	-	303	86358325	-	RHE_CH02720	-	putative phenazine antibiotic biosynthesis protein
2657	 64.68	0	2833584..2834339	-	251	86358326	-	RHE_CH02721	-	MutT/NUDIX family NTP pyrophosphohydrolase
2658	 60.81	0	2834354..2835463	-	369	86358327	-	RHE_CH02722	-	putative endonuclease/exonuclease/phosphatase family protein
2659	 68.22	+2	2835854..2836756	-	300	86358328	afuC2	RHE_CH02723	-	iron(III) ABC transporter, ATP-binding protein
2660	 63.72	0	2836744..2838438	-	564	86358329	afuB2	RHE_CH02724	-	iron(III) ABC transporter, permease protein
2661	 63.39	0	2838446..2839423	-	325	86358330	afuA3	RHE_CH02725	-	iron(III) ABC transporter, substrate-binding protein
2662	 65.10	+1	2839558..2840325	-	255	86358331	-	RHE_CH02726	-	putative hydrolase protein
2663	 59.45	0	2840517..2840987	+	156	86358332	-	RHE_CH02727	-	MarR family transcriptional regulator
2664	 63.46	0	2841194..2842252	+	352	86358333	mocA	RHE_CH02728	-	oxidoreductase protein
2665	 62.33	0	2842478..2843698	-	406	86358334	-	RHE_CH02729	-	aminotransferase protein
2666	 63.76	0	2844079..2845179	+	366	86358335	ilvE2	RHE_CH02730	-	branched-chain amino acid aminotransferase
2667	 58.73	0	2845513..2845764	+	83	86358336	-	RHE_CH02731	-	hypothetical protein
2668	 62.04	0	2845748..2846071	+	107	86358337	-	RHE_CH02732	-	hypothetical protein
2669	 62.76	0	2846061..2846648	+	195	86358338	-	RHE_CH02733	-	SAM-dependent methyltransferase protein
2670	 60.27	0	2846918..2847355	+	145	86358339	-	RHE_CH02734	-	hypothetical protein
2671	 60.87	0	2847358..2848926	+	522	86358340	-	RHE_CH02735	-	putative L-sorbosone dehydrogenase protein
2672	 64.51	0	2849002..2849325	+	107	86358341	-	RHE_CH02736	-	hypothetical protein
2673	 54.70	-2	2849752..2850495	+	247	86358342	-	RHE_CH02737	-	putative SAM-dependent methyltransferase protein
2674	 59.70	0	2850525..2852204	-	559	86358343	-	RHE_CH02738	-	hypothetical protein
2675	 55.89	-1	2852417..2853520	+	367	86358344	-	RHE_CH02739	-	myo-inositol-1-phosphate synthase protein
2676	 58.00	-1	2853517..2854116	+	199	86358345	-	RHE_CH02740	-	putative phosphoglycerate mutase protein
2677	 59.59	0	2854149..2855123	+	324	86358346	-	RHE_CH02741	-	hypothetical protein
2678	 58.37	-1	2855097..2856398	-	433	86358347	-	RHE_CH02742	-	hypothetical protein
2679	 56.03	-1	2856514..2857575	-	353	86358348	-	RHE_CH02743	-	hypothetical protein
2680	 61.76	0	2857820..2858839	-	339	86358349	ilvC	RHE_CH02744	-	ketol-acid reductoisomerase
2681	 66.21	+1	2858890..2859546	-	218	86358350	-	RHE_CH02745	-	TetR family transcriptional regulator
2682	 63.20	0	2859543..2860061	-	172	86358351	-	RHE_CH02746	-	hypothetical protein
2683	 66.79	+1	2860214..2861845	-	543	86358352	rtlK	RHE_CH02747	-	L-ribulokinase protein
2684	 64.16	0	2861998..2862714	-	238	86358353	-	RHE_CH02748	-	putative hydrolase protein
2685	 63.65	0	2862718..2863446	-	242	86358354	glpQ	RHE_CH02749	-	glycerophosphoryl diester phosphodiesterase protein
2686	 60.48	0	2863475..2864395	-	306	86358355	ugpEch1	RHE_CH02750	-	sn-glycerol-3-phosphate ABC transporter, permease protein
2687	 60.46	0	2864398..2865363	-	321	86358356	ugpAch1	RHE_CH02751	-	sn-glycerol-3-phosphate ABC transporter, permease protein
2688	 62.39	0	2865377..2866474	-	365	86358357	ugpBch1	RHE_CH02752	-	sn-glycerol-3-phosphate ABC transporter, substrate-binding protein
2689	 59.58	0	2866888..2867931	+	347	86358358	ugpCch1	RHE_CH02753	-	glycerol-3-phosphate transporter ATP-binding subunit
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.