IslandPath Analysis: Pyrococcus furiosus DSM 3638



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.88   STD DEV: 3.74
Pyrococcus furiosus DSM 3638, complete genome - 1..1908256
2125 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
174	 37.60	0	180802..181317	-	171	18976543	-	PF0171	-	hypothetical protein
175	 43.49	0	181525..182499	-	324	18976544	-	PF0172	-	O-sialoglycoprotein endopeptidase
176	 39.51	0	182599..183489	+	296	18976545	-	PF0173	-	preprotein translocase subunit SecF
177	 39.39	0	183486..185003	+	505	18976546	secD	PF0174	-	preprotein translocase subunit SecD
178	 38.67	0	185009..185701	+	230	18976547	-	PF0175	-	trk system potassium uptake - like protein
179	 37.00	-1	185779..186105	+	108	33359456	-	PF0176	-	V-type ATP synthase subunit H
180	 39.16	0	186107..188098	+	663	18976549	-	PF0177	-	V-type ATP synthase subunit I
181	 44.17	0	188100..188579	+	159	18976550	-	PF0178	-	V-type ATP synthase subunit K
182	 37.91	0	188599..189210	+	203	33359457	-	PF0179	-	V-type ATP synthase subunit E
183	 36.57	-1	189217..190329	+	370	18976552	-	PF0180	-	V-type ATP synthase subunit C
184	 40.38	0	190326..190637	+	103	18976553	-	PF0181	-	V-type ATP synthase subunit F
185	 42.44	0	190644..193685	+	1013	18976554	-	PF0182	-	V-type ATP synthase subunit A
186	 45.28	+1	193691..195079	+	462	18976555	-	PF0183	-	V-type ATP synthase subunit B
187	 38.29	0	195110..195754	+	214	18976556	-	PF0184	-	V-type ATP synthase subunit D
188	 37.04	-1	195786..197000	+	404	18976557	-	PF0185	-	partial alanyl-tRNA synthetase matches COOH terminus half
189	 39.25	0	196975..197802	-	275	18976558	-	PF0186	-	n-type ATP pyrophosphatase superfamily protein
190	 40.37	0	197868..198776	-	302	18976559	-	PF0187	-	putative cofactor synthesis protein
191	 38.98	0	198787..199530	-	247	18976560	-	PF0188	-	dihydroorotate dehydrogenase electron transfer subunit
192	 37.93	0	199478..200827	-	449	18976561	-	PF0189	-	dihydroorotase
193	 44.50	0	201035..203524	+	829	18976562	-	PF0190	-	hypothetical protein
194	 40.86	0	203712..204761	+	349	18976563	-	PF0191	-	oligopeptide transport system permease protein
195	 43.65	0	204772..206196	+	474	18976564	-	PF0192	-	oligopeptide transporter permease appc
196	 45.73	+1	206207..207166	+	319	18976565	-	PF0193	-	putative ABC transport ATP binding protein
197	 44.74	+1	207177..208184	+	335	18976566	-	PF0194	-	dipeptide ABC transporter, ATP-binding protein
198	 39.23	0	208160..208702	+	180	18976567	-	PF0195	-	hypothetical protein
199	 44.21	0	208695..209264	+	189	18976568	-	PF0196	-	glucose-6-phosphate isomerase
200	 45.42	+1	209332..209571	+	79	18976569	-	PF0197	-	phosphoribosylformylglycinamidine synthase subunit PurS
201	 42.25	0	209565..210248	+	227	18976570	-	PF0198	-	phosphoribosylformylglycinamidine synthase subunit I
202	 43.45	0	210357..212471	+	704	18976571	-	PF0199	-	phosphoribosylformylglycinamidine synthase II
203	 42.20	0	212635..214077	-	480	18976572	-	PF0200	-	hypothetical protein
204	 42.07	0	214120..216615	-	831	18976573	-	PF0201	-	aconitate hydratase
205	 41.73	0	216620..217822	-	400	18976574	-	PF0202	-	isocitrate dehydrogenase
206	 38.80	0	217828..218961	-	377	18976575	-	PF0203	-	citrate synthase
207	 38.56	0	219318..220427	+	369	18976576	-	PF0204	-	hypothetical protein
208	 41.42	0	220424..221932	+	502	18976577	-	PF0205	-	glutamate synthase subunit alpha
209	 38.77	0	221929..222756	+	275	18976578	-	PF0206	-	hypothetical protein
210	 41.69	0	222845..224077	+	410	18976579	-	PF0207	-	argininosuccinate synthase
211	 40.00	0	224091..225470	+	459	18976580	-	PF0208	-	argininosuccinate lyase
212	 39.42	0	225439..226260	+	273	18976581	-	PF0209	-	ribosomal protein s6 modification protein
213	 41.70	0	226257..227870	-	537	18976582	-	PF0210	-	putative oxidative cyclase
214	 37.89	0	228005..228619	+	204	18976583	-	PF0211	-	hypothetical protein
215	 39.30	0	228606..230933	-	775	18976584	-	PF0212	-	DNA-directed DNA polymerase
216	 42.19	0	231034..231846	+	270	18976585	-	PF0213	-	hypothetical protein
217	 39.68	0	231843..232583	-	246	18976586	-	PF0214	-	n-type ATP pyrophosphatase
218	 45.55	+1	232621..233913	-	430	18976587	eno	PF0215	-	phosphopyruvate hydratase
219	 35.95	-1	233948..234520	-	190	18976588	maf	PF0216	-	Maf-like protein
220	 43.86	0	234645..234929	+	94	161484704	rpl44e	PF0217	-	50S ribosomal protein L44e
221	 40.10	0	234934..235125	+	63	18976590	rps27e	PF0218	-	30S ribosomal protein S27e
222	 34.43	-1	235100..235555	-	151	18976591	-	PF0219	-	putative 6-pyruvoyl tetrahydrobiopterin synthase
223	 41.23	0	235489..236793	+	434	18976592	-	PF0220	-	hexulose-6-phosphate synthase (d-arabino 3-hexulose 6-phosphate formaldehyde lyase)
224	 36.67	-1	236943..237632	+	229	18976593	-	PF0221	-	hypothetical protein
225	 38.79	0	237626..238285	+	219	18976594	-	PF0222	-	hydrolase related to 2-haloalkanoic acid dehalogenase
226	 34.43	-1	238269..238451	+	60	33359459	-	PF0222.1n	-	hypothetical protein
227	 39.04	0	238448..239236	+	262	18976595	-	PF0223	-	hypothetical protein
228	 41.46	0	239229..239843	-	204	18976596	-	PF0224	-	hypothetical protein
229	 38.76	0	239785..240171	+	128	18976597	-	PF0225	-	N-acetyltransferase
230	 42.12	0	240105..240377	+	90	18976598	-	PF0226	-	hypothetical protein
231	 30.23	-2	240484..240612	-	42	33359460	-	PF0226.1n	-	hypothetical protein
232	 36.46	-1	240581..240772	-	63	18976599	-	PF0227	-	hypothetical protein
233	 41.18	0	240797..241000	-	67	18976600	-	PF0228	-	hypothetical protein
234	 36.78	-1	240936..242504	-	522	18976601	-	PF0229	-	hypothetical protein
235	 38.00	0	242646..243224	+	192	18976602	-	PF0230	-	ArsR family transcriptional regulator
236	 41.83	0	243233..243538	+	101	18976603	-	PF0231	-	hypothetical protein
237	 37.59	0	243538..244101	+	187	18976604	-	PF0232	-	ArsR family transcriptional regulator
238	 43.28	0	244161..245558	+	465	18976605	-	PF0233	-	hypothetical protein
239	 37.52	0	245544..246617	-	357	18976606	-	PF0234	-	hypothetical protein
240	 39.43	0	246614..247876	-	420	18976607	-	PF0235	-	glucose-1-phosphate thymidylyltransferase
241	 39.17	0	247929..248768	-	279	18976608	-	PF0236	-	ribose-phosphate pyrophosphokinase
242	 38.79	0	248781..249476	-	231	33359461	-	PF0237	-	hypothetical protein
243	 37.53	0	249473..249877	-	134	33359462	-	PF0238	-	hypothetical protein
244	 39.72	0	249878..250159	-	93	33359463	-	PF0239	-	hypothetical protein
245	 44.72	+1	250877..251719	+	280	18976612	-	PF0240	-	hypothetical protein
246	 39.38	0	251788..252945	-	385	18976613	-	PF0241	-	tryptophanyl-tRNA synthetase
247	 46.03	+1	253396..253584	-	62	18976614	-	PF0242	-	transposase
248	 52.57	+2	253719..254945	-	408	18976615	-	PF0243	-	DEXX-box atpase
249	 47.45	+1	254994..255248	-	84	18976616	-	PF0244	-	hypothetical protein
250	 45.54	+1	255427..255729	-	100	18976617	-	PF0245	-	hypothetical protein
251	 32.69	-2	255759..256070	+	103	18976618	-	PF0246	-	hypothetical protein
252	 36.57	-1	256063..257019	-	318	33359464	-	PF0247	-	putative HTH transcription regulator
253	 41.10	0	257146..257634	+	162	18976620	-	PF0248	-	hypothetical protein
254	 37.81	0	257646..258203	+	185	18976621	-	PF0249	-	ham1 protein
255	 41.46	0	258208..258687	+	159	18976622	-	PF0250	-	Lrp family transcriptional regulator
256	 42.86	0	259043..260239	+	398	18976623	-	PF0251	-	hypothetical protein
257	 49.67	+2	262329..262481	-	50	18976624	-	PF0252	-	30S ribosomal protein S27ae
258	 41.00	0	262484..262783	-	99	18976625	rps24e	PF0253	-	30S ribosomal protein S24e
259	 39.51	0	262773..263306	-	177	18976626	-	PF0254	-	hypothetical protein
260	 40.86	0	263306..263491	-	61	18976627	-	PF0255	-	DNA-directed RNA polymerase subunit E''
261	 41.40	0	263488..264057	-	189	18976628	-	PF0256	-	DNA-directed RNA polymerase subunit E'
262	 43.20	0	264096..264632	-	178	18976629	-	PF0257	-	inorganic pyrophosphatase
263	 39.36	0	264702..265547	-	281	18976630	-	PF0258	-	putative endonuclease IV
264	 39.60	0	265619..265921	+	100	18976631	-	PF0259	-	hypothetical protein
265	 40.58	0	265918..267048	+	376	18976632	-	PF0260	-	hypothetical protein
266	 40.26	0	267040..269811	-	923	18976633	-	PF0261	-	hypothetical protein
267	 41.61	0	269798..272044	-	748	18976634	-	PF0262	-	MFS family transporter
268	 41.43	0	272118..272636	+	172	18976635	-	PF0263	-	hypothetical protein
269	 40.80	0	272706..274004	-	432	18976636	hisS	PF0264	-	histidyl-tRNA synthetase
270	 46.21	+1	274108..275295	+	395	18976637	-	PF0265	-	2-amino-3-ketobutyrate coenzyme A ligase
271	 41.33	0	276009..276521	-	170	18976638	-	PF0266	-	tRNA-splicing endonuclease subunit alpha
272	 40.16	0	276518..277030	-	170	18976639	-	PF0267	-	ribosomal protein s18 alanine acetyltransferase
273	 41.71	0	277117..278250	+	377	18976640	-	PF0268	-	Na+/H+ antiporter - like protein
40.88	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.