IslandPathversion 1.0

IslandPath Analysis: Pyrobaculum aerophilum str. IM2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.51 STD DEV: 5.01
Pyrobaculum aerophilum str. IM2, complete genome - 1..2222430
2605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2078	 47.27	0	1762029..1762358	-	109	18313721	-	PAE2964	-	hypothetical protein
2079	 50.70	0	1762355..1762780	-	141	18313722	-	PAE2965	-	hypothetical protein
2080	 46.38	-1	1762777..1762914	-	45	18313723	-	PAE2966	-	hypothetical protein
2081	 43.19	-1	1762911..1763123	-	70	18313724	-	PAE2967	-	hypothetical protein
2082	 53.28	0	1763197..1763883	+	228	18313725	-	PAE2968	-	sugar-phosphate nucleotidyl transferase, putative
2083	 52.60	0	1763873..1765585	+	570	18313726	gltX	PAE2969	-	glutamyl-tRNA synthetase
2084	 53.17	0	1765578..1766570	+	330	18313727	-	PAE2970	-	hypothetical protein
2085	 48.72	0	1766599..1766988	+	129	18313728	-	PAE2971	-	hypothetical protein
2086	 52.82	0	1766954..1767538	-	194	18313729	-	PAE2972	-	hypothetical protein
2087	 52.78	0	1767516..1768811	-	431	18313730	-	PAE2973	-	asparaginyl-tRNA synthetase
2088	 48.59	0	1768815..1769063	-	82	18313731	-	PAE2975	-	hypothetical protein
2089	 52.28	0	1769060..1769872	-	270	18313732	-	PAE2977	-	3-hydroxyisobutyrate dehydrogenase, putative
2090	 54.75	0	1769921..1770952	+	343	18313733	-	PAE2978	-	sua5 family protein
2091	 48.72	0	1770949..1771728	+	259	18313734	-	PAE2979	-	methyltransferase
2092	 51.35	0	1771753..1772607	+	284	18313735	-	PAE2980	-	ribose-phosphate pyrophosphokinase
2093	 53.61	0	1772602..1773612	-	336	18313736	-	PAE2981	-	acetylpolyamine aminohydrolase, putative
2094	 47.40	0	1773672..1773863	+	63	18313737	-	PAE2982	-	hypothetical protein
2095	 49.52	0	1773841..1774470	-	209	18313738	-	PAE2983	-	hypothetical protein
2096	 51.50	0	1774557..1775222	+	221	18313739	-	PAE2984	-	hypothetical protein
2097	 49.85	0	1775219..1775902	+	227	18313740	-	PAE2985	-	hypothetical protein
2098	 53.89	0	1775910..1776551	+	213	18313741	-	PAE2986	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
2099	 44.44	-1	1776535..1776948	-	137	18313742	-	PAE2987	-	hypothetical protein
2100	 54.22	0	1777001..1778077	+	358	18313743	-	PAE2989	-	hypothetical protein
2101	 53.75	0	1778072..1779232	-	386	18313744	-	PAE2990	-	nicotinate phosphoribosyltransferase
2102	 50.26	0	1779264..1781006	+	580	18313745	-	PAE2991	-	hypothetical protein
2103	 59.07	+1	1780978..1781451	-	157	18313746	-	PAE2992	-	hypothetical protein
2104	 50.91	0	1781522..1783330	+	602	18313747	-	PAE2993	-	DNA topoisomerase (topA)
2105	 52.63	0	1783323..1784234	+	303	18313748	-	PAE2994	-	hypothetical protein
2106	 48.91	0	1784241..1784561	+	106	18313749	-	PAE2996	-	hypothetical protein
2107	 51.47	0	1784601..1786166	+	521	18313750	-	PAE2998	-	hypothetical protein
2108	 52.36	0	1786176..1787510	-	444	18313751	-	PAE3000	-	elongation factor 1-alpha
2109	 54.62	0	1787626..1788231	-	201	18313752	-	PAE3001	-	isochorismatase, putative
2110	 54.67	0	1788559..1788708	+	49	18313753	-	PAE3002	-	paREP2a
2111	 51.71	0	1788787..1789167	+	126	18313754	-	PAE3003	-	hypothetical protein
2112	 59.05	+1	1789190..1789504	+	104	18313755	-	PAE3004	-	hypothetical protein
2113	 53.26	0	1789543..1790109	+	188	18313756	-	PAE3005	-	hypothetical protein
2114	 58.54	+1	1790290..1790412	-	40	18313757	-	PAE3006	-	paREP2a
2115	 51.82	0	1790419..1790802	-	127	18313758	-	PAE3007	-	paREP2a
2116	 53.97	0	1790812..1792032	+	406	18313759	-	PAE3008	-	paREP2b
2117	 50.39	0	1792431..1793069	+	212	18313760	-	PAE3009	-	hypothetical protein
2118	 56.35	0	1793082..1793585	-	167	18313761	-	PAE3010	-	hypothetical protein
2119	 49.64	0	1793711..1794826	-	371	18313762	-	PAE3011	-	hypothetical protein
2120	 48.55	0	1795152..1795427	-	91	18313763	-	PAE3014	-	hypothetical protein
2121	 49.23	0	1795399..1796115	-	238	18313764	-	PAE3015	-	hypothetical protein
2122	 50.70	0	1796296..1796508	-	70	18313765	-	PAE3016	-	hypothetical protein
2123	 47.09	0	1796589..1797017	-	142	18313766	-	PAE3017	-	hypothetical protein
2124	 50.26	0	1797426..1797614	-	62	18313767	-	PAE3020	-	hypothetical protein
2125	 60.69	+1	1798431..1799183	+	250	18313768	-	PAE3023	-	carbon nitrogen hydrolase, conjectural
2126	 55.49	0	1799463..1800554	-	363	18313769	-	PAE3024	-	sugar-phosphate nucleotidyl transferase
2127	 55.17	0	1800556..1802364	-	602	18313770	-	PAE3025	-	D-fructose-6-phosphate amidotransferase
2128	 54.78	0	1802425..1803375	-	316	18313771	-	PAE3027	-	hypothetical protein
2129	 53.37	0	1803491..1804024	+	177	18313772	-	PAE3028	-	hypothetical protein
2130	 53.14	0	1804297..1806654	+	785	18313773	-	PAE3030	-	oligosaccharyl transferase STT3-like protein
2131	 46.58	0	1806644..1806862	-	72	18313774	-	PAE3031	-	H/ACA RNA-protein complex component Nop10p
2132	 46.62	0	1806859..1807656	-	265	18313775	-	PAE3032	-	translation initiation factor IF-2 subunit alpha
2133	 55.39	0	1807697..1807900	-	67	18313776	rps27e	PAE3033	-	30S ribosomal protein S27e
2134	 45.29	-1	1807902..1808177	-	91	18313777	rpl44e	PAE3034	-	50S ribosomal protein L44e
2135	 50.72	0	1808209..1808691	-	160	18313778	-	PAE3035	-	hypothetical protein
2136	 47.71	0	1808684..1809622	-	312	18313779	-	PAE3036	-	DNA primase related protein
2137	 48.93	0	1809619..1810368	-	249	18313780	-	PAE3038	-	proliferating-cell nuclear antigen homolog (PCNA)
2138	 49.85	0	1810471..1810803	-	110	18313781	-	PAE3040	-	putative DNA-directed RNA polymerase subunit M
2139	 52.41	0	1810905..1811381	+	158	18313782	-	PAE3043	-	30S ribosomal protein S19e
2140	 54.05	0	1811381..1811713	+	110	18313783	-	PAE3044	-	hypothetical protein
2141	 49.12	0	1811751..1811807	+	18	18313784	-	PAE3044a	-	ribosomal protein L39E, frameshift
2142	 49.44	0	1811898..1812617	-	239	18313785	-	PAE3045	-	geranylgeranylglyceryl phosphate synthase-like protein
2143	 49.67	0	1812604..1812909	-	101	18313786	-	PAE3047	-	hypothetical protein
2144	 54.61	0	1813039..1814274	+	411	18313787	-	PAE3048	-	molybdenum cofactor biosynthesis protein (moaA)
2145	 50.08	0	1814254..1814916	-	220	18313788	-	PAE3049	-	phosphoribosyl transferase
2146	 53.33	0	1814958..1815947	-	329	18313789	-	PAE3051	-	hypothetical protein
2147	 45.99	-1	1816041..1816427	-	128	18313790	-	PAE3053	-	hypothetical protein
2148	 54.58	0	1816411..1817163	-	250	18313791	-	PAE3055	-	extragenic suppressor protein suhB-like protein
2149	 50.49	0	1817287..1818312	-	341	18313792	-	PAE3057	-	hypothetical protein
2150	 53.33	0	1818452..1818691	-	79	18313793	-	PAE3058	-	hypothetical protein
2151	 44.78	-1	1819970..1820362	-	130	18313794	-	PAE3060	-	hypothetical protein
2152	 46.58	0	1820389..1820607	+	72	18313795	-	PAE3062	-	hypothetical protein
2153	 47.53	0	1820978..1822618	+	546	18313796	-	PAE3063	-	hypothetical protein
2154	 50.33	0	1822587..1823351	-	254	18313797	-	PAE3064	-	ABC-2 type transport system, membrane protein
2155	 54.33	0	1823344..1824105	-	253	18313798	-	PAE3065	-	ABC-2 type transport system, membrane protein
2156	 51.98	0	1824077..1825009	-	310	18313799	-	PAE3066	-	ABC-2 type transport system ATP-binding protein
2157	 54.73	0	1825713..1826315	+	200	18313800	-	PAE3068	-	phosphoglycolate phosphatase (pgp), conjectural
2158	 51.52	0	1826870..1827133	-	87	18313801	-	PAE3072	-	paREP2b
2159	 62.50	+2	1827370..1827465	-	31	18313802	-	PAE3075	-	paREP2b
2160	 56.86	+1	1827570..1828589	+	339	18313803	-	PAE3076	-	hypothetical protein
2161	 49.21	0	1828771..1828959	+	62	18313804	-	PAE3077	-	hypothetical protein
2162	 53.92	0	1829177..1829890	-	237	18313805	-	PAE3079	-	hypothetical protein
2163	 49.15	0	1829929..1830282	+	117	18313806	-	PAE3080	-	hypothetical protein
2164	 51.24	0	1830313..1830513	+	66	18313807	-	PAE3081	-	hypothetical protein
2165	 57.22	+1	1830510..1831409	-	299	18313808	-	PAE3083	-	asparaginase
2166	 52.50	0	1831406..1831885	-	159	18313809	rps4p	PAE3084	-	30S ribosomal protein S4
2167	 53.59	0	1831917..1832375	-	152	18313810	rps13p	PAE3085	-	30S ribosomal protein S13P
2168	 41.60	-1	1832404..1833819	-	471	18313811	-	PAE3086	-	oligopeptide ABC transporter, permease protein
2169	 42.48	-1	1833816..1834886	-	356	18313812	-	PAE3087	-	oligopeptide ABC transporter, permease protein
2170	 45.82	-1	1834936..1837530	-	864	18313813	-	PAE3088	-	oligopeptide binding protein, putative
2171	 49.96	0	1837776..1838930	-	384	18313814	-	PAE3090	-	pullulanase
2172	 52.39	0	1839545..1840672	-	375	18313815	-	PAE3091	-	tryptophanyl-tRNA synthetase
2173	 53.24	0	1840707..1841369	-	220	18313816	-	PAE3092	-	DNA-(apurinic or apyrimidinic site) lyase, conjectural
2174	 55.03	0	1841444..1842208	-	254	18313817	-	PAE3093	-	molybdenum cofactor biosynthesis protein (moaA)
2175	 48.91	0	1842418..1842693	+	91	18313818	-	PAE3095	-	ribosomal protein L31
2176	 53.54	0	1842693..1843355	+	220	18313819	-	PAE3097	-	translation initiation factor IF-6
2177	 44.30	-1	1843412..1843648	+	78	18313820	-	PAE3098	-	ribosomal protein LX
51.51	MEAN

5.01	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.