IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1389	 47.31	0	1724342..1727167	-	941	148653206	aceE	PsycPRwf_1404	-	pyruvate dehydrogenase subunit E1
1390	 45.80	0	1727862..1728302	+	146	148653207	-	PsycPRwf_1405	-	hypothetical protein
1391	 43.34	0	1728378..1729496	-	372	148653208	-	PsycPRwf_1406	-	AFG1 family ATPase
1392	 48.65	0	1729553..1730218	-	221	148653209	-	PsycPRwf_1407	-	alpha/beta fold family hydrolase-like protein
1393	 46.61	0	1730681..1731064	+	127	148653210	-	PsycPRwf_1408	-	hypothetical protein
1394	 48.17	0	1731126..1732163	-	345	148653211	-	PsycPRwf_1409	-	binding-protein-dependent transport systems inner membrane component
1395	 45.79	0	1732165..1733232	-	355	148653212	-	PsycPRwf_1410	-	binding-protein-dependent transport systems inner membrane component
1396	 48.72	0	1733302..1734081	-	259	148653213	-	PsycPRwf_1411	-	hydroxyacylglutathione hydrolase
1397	 46.13	0	1734151..1736010	-	619	148653214	-	PsycPRwf_1412	-	extracellular solute-binding protein
1398	 46.95	0	1736047..1737192	-	381	148653215	-	PsycPRwf_1413	-	phosphoserine aminotransferase
1399	 48.09	0	1737306..1738118	-	270	148653216	-	PsycPRwf_1414	-	hypothetical protein
1400	 43.44	0	1738475..1739374	-	299	148653217	-	PsycPRwf_1415	-	NLPA lipoprotein
1401	 47.22	0	1739618..1740301	-	227	148653218	-	PsycPRwf_1416	-	binding-protein-dependent transport systems inner membrane component
1402	 45.49	0	1740305..1741069	-	254	148653219	-	PsycPRwf_1417	-	ABC transporter related
1403	 40.10	-1	1741312..1741518	-	68	148653220	-	PsycPRwf_1418	-	hypothetical protein
1404	 49.22	0	1741876..1743153	+	425	148653221	-	PsycPRwf_1419	-	phosphoribosylamine--glycine ligase
1405	 46.61	0	1743449..1744909	+	486	148653222	-	PsycPRwf_1420	-	hypothetical protein
1406	 47.20	0	1745011..1745796	-	261	148653223	-	PsycPRwf_1421	-	putative methyltransferase
1407	 49.76	+1	1745959..1746165	+	68	148653224	-	PsycPRwf_1422	-	hypothetical protein
1408	 49.37	+1	1746284..1747480	+	398	148653225	-	PsycPRwf_1423	-	acetylornithine aminotransferase
1409	 48.34	0	1747578..1748210	-	210	148653226	-	PsycPRwf_1424	-	Holliday junction DNA helicase RuvA
1410	 49.59	+1	1748378..1748746	-	122	148653227	-	PsycPRwf_1425	-	hypothetical protein
1411	 44.00	0	1749092..1750300	-	402	148653228	-	PsycPRwf_1426	-	phosphoglycerate kinase
1412	 44.55	0	1750571..1750900	+	109	148653229	-	PsycPRwf_1427	-	TraR/DksA family transcriptional regulator
1413	 46.67	0	1751034..1752068	-	344	148653230	-	PsycPRwf_1428	-	peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
1414	 42.61	0	1752505..1753140	+	211	148653231	-	PsycPRwf_1429	-	two component LuxR family transcriptional regulator
1415	 47.66	0	1753258..1754772	-	504	148653232	-	PsycPRwf_1430	-	carboxyl-terminal protease
1416	 46.64	0	1754801..1756393	-	530	148653233	-	PsycPRwf_1431	-	phosphoglyceromutase
1417	 44.99	0	1757028..1757636	-	202	148653234	-	PsycPRwf_1432	-	FxsA cytoplasmic membrane protein
1418	 49.23	0	1757863..1758447	+	194	148653235	-	PsycPRwf_1433	-	crossover junction endodeoxyribonuclease RuvC
1419	 48.77	0	1758453..1759307	-	284	148653236	-	PsycPRwf_1434	-	hypothetical protein
1420	 41.59	-1	1759343..1759972	-	209	148653237	-	PsycPRwf_1435	-	glutathione S-transferase domain-containing protein
1421	 43.61	0	1760224..1760865	-	213	148653238	-	PsycPRwf_1436	-	peroxidase
1422	 43.54	0	1761205..1761831	-	208	148653239	-	PsycPRwf_1437	-	hypothetical protein
1423	 43.42	0	1762060..1762872	-	270	148653240	-	PsycPRwf_1438	-	ATPase involved in DNA replication initiation-like protein
1424	 43.42	0	1763049..1764149	-	366	148653241	-	PsycPRwf_1439	-	hypothetical protein
1425	 47.99	0	1764519..1765610	+	363	148653242	-	PsycPRwf_1440	-	phosphoribosylaminoimidazole synthetase
1426	 49.07	0	1765612..1766310	+	232	148653243	-	PsycPRwf_1441	-	phosphoribosylglycinamide formyltransferase
1427	 46.18	0	1766405..1767058	-	217	148653244	-	PsycPRwf_1442	-	lysine exporter protein LysE/YggA
1428	 43.95	0	1767158..1767892	-	244	148653245	-	PsycPRwf_1443	-	ABC transporter related
1429	 42.84	0	1767941..1768897	-	318	148653246	-	PsycPRwf_1444	-	NMT1/THI5-like protein
1430	 40.26	-1	1769036..1769815	-	259	148653247	-	PsycPRwf_1445	-	binding-protein-dependent transport systems inner membrane component
1431	 42.85	0	1770053..1771450	-	465	148653248	-	PsycPRwf_1446	-	aldehyde dehydrogenase
1432	 47.17	0	1771635..1772624	-	329	148653249	-	PsycPRwf_1447	-	LysR family transcriptional regulator
1433	 44.51	0	1773186..1774769	+	527	148653250	-	PsycPRwf_1448	-	isocitrate lyase
1434	 46.60	0	1775118..1776677	+	519	148653251	-	PsycPRwf_1449	-	adenylate cyclase
1435	 46.93	0	1776815..1777351	-	178	148653252	-	PsycPRwf_1450	-	ErfK/YbiS/YcfS/YnhG family protein
1436	 45.30	0	1777486..1778613	+	375	148653253	-	PsycPRwf_1451	-	hypothetical protein
1437	 49.08	0	1778728..1779705	-	325	148653254	ruvB	PsycPRwf_1452	-	Holliday junction DNA helicase B
1438	 43.27	0	1780016..1780921	-	301	148653255	-	PsycPRwf_1453	-	LysR family transcriptional regulator
1439	 45.57	0	1781069..1783324	-	751	148653256	-	PsycPRwf_1454	-	DNA polymerase III, subunits gamma and tau
1440	 42.90	0	1783467..1784909	-	480	148653257	-	PsycPRwf_1455	-	hypothetical protein
1441	 45.53	0	1785232..1786764	-	510	148653258	lysS	PsycPRwf_1456	-	lysyl-tRNA synthetase
1442	 48.22	0	1786896..1787990	-	364	148653259	prfA	PsycPRwf_1457	-	peptide chain release factor 1
1443	 44.94	0	1788307..1789452	-	381	148653260	-	PsycPRwf_1458	-	3-oxoacyl-(acyl carrier protein) synthase III
1444	 48.38	0	1789761..1790345	+	194	148653261	-	PsycPRwf_1459	-	ATPase/kinase involved in NAD metabolism-like protein
1445	 49.39	+1	1790372..1791592	-	406	148653262	-	PsycPRwf_1460	-	tryptophan synthase subunit beta
1446	 46.24	0	1791913..1793268	+	451	148653263	-	PsycPRwf_1461	-	sodium:dicarboxylate symporter
1447	 45.61	0	1793547..1794605	+	352	148653264	-	PsycPRwf_1462	-	FMN-dependent alpha-hydroxy acid dehydrogenase
1448	 43.15	0	1794867..1795997	+	376	148653265	-	PsycPRwf_1463	-	porin
1449	 44.44	0	1796736..1797239	+	167	148653266	-	PsycPRwf_1464	-	hypothetical protein
1450	 46.80	0	1797903..1798823	-	306	148653267	-	PsycPRwf_1466	-	hypothetical protein
1451	 49.74	+1	1799366..1799944	+	192	148653268	-	PsycPRwf_1467	-	TetR family transcriptional regulator
1452	 44.44	0	1800001..1801476	+	491	148653269	-	PsycPRwf_1468	-	EmrB/QacA family drug resistance transporter
1453	 40.67	-1	1801499..1801798	+	99	148653270	-	PsycPRwf_1469	-	transposase IS3/IS911 family protein
1454	 42.67	0	1801846..1802145	+	99	148653271	-	PsycPRwf_1470	-	hypothetical protein
1455	 41.52	-1	1802156..1802656	-	166	148653272	-	PsycPRwf_1471	-	integrase catalytic subunit
1456	 41.84	-1	1802698..1803426	-	242	148653273	-	PsycPRwf_1472	-	integrase catalytic subunit
1457	 41.38	-1	1803513..1803773	-	86	148653274	-	PsycPRwf_1473	-	transposase IS3/IS911 family protein
1458	 37.04	-2	1804082..1804675	+	197	148653275	-	PsycPRwf_1474	-	hypothetical protein
1459	 35.25	-2	1806393..1807070	+	225	148653276	-	PsycPRwf_1475	-	hypothetical protein
1460	 43.86	0	1807058..1807912	-	284	148653277	-	PsycPRwf_1476	-	integrase catalytic subunit
1461	 41.41	-1	1807927..1808223	-	98	148653278	-	PsycPRwf_1477	-	transposase IS3/IS911 family protein
1462	 35.18	-2	1808544..1809302	-	252	148653279	-	PsycPRwf_1478	-	integrase catalytic subunit
1463	 36.46	-2	1809371..1809913	-	180	148653280	-	PsycPRwf_1479	-	hypothetical protein
1464	 44.12	0	1809979..1810386	+	135	148653281	-	PsycPRwf_1480	-	transposase IS3/IS911 family protein
1465	 47.25	0	1810383..1810727	+	114	148653282	-	PsycPRwf_1481	-	IS66 Orf2 family protein
1466	 46.44	0	1810770..1812509	+	579	148653283	-	PsycPRwf_1482	-	transposase IS66
1467	 44.06	0	1812836..1813609	-	257	148653284	-	PsycPRwf_1483	-	hypothetical protein
1468	 45.45	0	1813893..1814882	+	329	148653285	-	PsycPRwf_1484	-	alpha/beta fold family hydrolase-like protein
1469	 47.22	0	1814963..1817296	-	777	148653286	-	PsycPRwf_1485	-	outer membrane receptor FepA
1470	 42.48	-1	1817682..1818632	+	316	148653287	-	PsycPRwf_1486	-	hypothetical protein
1471	 46.37	0	1818642..1819577	-	311	148653288	-	PsycPRwf_1487	-	hypothetical protein
1472	 47.18	0	1819783..1820331	-	182	148653289	-	PsycPRwf_1488	-	isochorismatase hydrolase
1473	 41.15	-1	1820717..1821151	+	144	148653290	-	PsycPRwf_1489	-	hypothetical protein
1474	 36.06	-2	1821766..1823085	-	439	148653291	-	PsycPRwf_1490	-	nucleoside recognition domain-containing protein
1475	 41.84	-1	1823544..1824272	-	242	148653292	-	PsycPRwf_1492	-	integrase catalytic subunit
1476	 41.38	-1	1824359..1824619	-	86	148653293	-	PsycPRwf_1493	-	transposase IS3/IS911 family protein
1477	 41.33	-1	1824675..1825049	-	124	148653294	-	PsycPRwf_1494	-	hypothetical protein
1478	 45.05	0	1825705..1826523	-	272	148653295	-	PsycPRwf_1495	-	integrase catalytic subunit
1479	 43.43	0	1826574..1826870	-	98	148653296	-	PsycPRwf_1496	-	transposase IS3/IS911 family protein
1480	 49.52	+1	1827022..1827954	+	310	148653297	-	PsycPRwf_1497	-	homocysteine S-methyltransferase
1481	 47.46	0	1827959..1829296	+	445	148653298	-	PsycPRwf_1498	-	amino acid permease-associated region
1482	 45.89	0	1829561..1830691	+	376	148653299	-	PsycPRwf_1499	-	sugar efflux transporter
1483	 48.24	0	1830832..1833099	+	755	148653300	-	PsycPRwf_1500	-	TonB-dependent siderophore receptor
1484	 46.77	0	1833308..1834981	+	557	148653301	-	PsycPRwf_1501	-	cyclic peptide transporter
1485	 46.46	0	1835131..1836288	+	385	148653302	-	PsycPRwf_1502	-	siderophore-interacting protein
1486	 44.77	0	1836414..1838345	-	643	148653303	-	PsycPRwf_1503	-	TonB-dependent siderophore receptor
1487	 41.84	-1	1838479..1839207	-	242	148653304	-	PsycPRwf_1504	-	integrase catalytic subunit
1488	 41.38	-1	1839294..1839554	-	86	148653305	-	PsycPRwf_1505	-	transposase IS3/IS911 family protein
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.