IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1242	 44.18	0	1543621..1544625	+	334	148653059	-	PsycPRwf_1255	-	alpha/beta hydrolase fold
1243	 41.73	-1	1544750..1545154	-	134	148653060	-	PsycPRwf_1256	-	hypothetical protein
1244	 48.55	0	1545375..1546616	-	413	148653061	argJ	PsycPRwf_1257	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1245	 43.75	0	1546676..1547491	-	271	148653062	-	PsycPRwf_1258	-	exonuclease III
1246	 47.38	0	1547579..1548226	-	215	148653063	-	PsycPRwf_1259	-	pyridoxamine 5'-phosphate oxidase
1247	 47.12	0	1548351..1549706	-	451	148653064	-	PsycPRwf_1260	-	phosphoglucosamine mutase
1248	 47.32	0	1549910..1551382	-	490	148653065	-	PsycPRwf_1261	-	inosine-5'-monophosphate dehydrogenase
1249	 47.29	0	1551736..1553619	-	627	148653066	-	PsycPRwf_1262	-	MscS mechanosensitive ion channel
1250	 47.50	0	1553778..1555295	-	505	148653067	-	PsycPRwf_1263	-	cysteinyl-tRNA synthetase
1251	 44.77	0	1555465..1556076	+	203	148653068	-	PsycPRwf_1264	-	ATP--cobalamin adenosyltransferase
1252	 48.29	0	1556187..1557149	-	320	148653069	-	PsycPRwf_1265	-	hypothetical protein
1253	 45.81	0	1557484..1558413	+	309	148653070	-	PsycPRwf_1266	-	glycerophosphoryl diester phosphodiesterase
1254	 45.42	0	1558872..1560062	+	396	148653071	-	PsycPRwf_1267	-	stearoyl-CoA 9-desaturase
1255	 47.78	0	1560379..1561956	+	525	148653072	-	PsycPRwf_1268	-	hypothetical protein
1256	 44.44	0	1562236..1564575	+	779	148653073	-	PsycPRwf_1269	-	malic enzyme
1257	 38.10	-2	1564645..1565295	-	216	148653074	-	PsycPRwf_1270	-	BLUF domain-containing protein
1258	 45.65	0	1565497..1566738	+	413	148653075	-	PsycPRwf_1271	-	tRNA cytidylyltransferase
1259	 39.67	-1	1567080..1568357	+	425	148653076	-	PsycPRwf_1272	-	phage integrase family protein
1260	 34.70	-2	1569287..1569505	+	72	148653077	-	PsycPRwf_1274	-	hypothetical protein
1261	 35.19	-2	1569596..1570456	+	286	148653078	-	PsycPRwf_1275	-	hypothetical protein
1262	 40.68	-1	1570549..1572903	-	784	148653079	-	PsycPRwf_1276	-	hypothetical protein
1263	 42.98	0	1573035..1573718	-	227	148653080	-	PsycPRwf_1277	-	hypothetical protein
1264	 40.85	-1	1574043..1574561	-	172	148653081	-	PsycPRwf_1278	-	hypothetical protein
1265	 42.01	-1	1574792..1575529	-	245	148653082	-	PsycPRwf_1279	-	hypothetical protein
1266	 45.15	0	1575526..1576380	-	284	148653083	-	PsycPRwf_1280	-	hypothetical protein
1267	 43.65	0	1576383..1578194	-	603	148653084	-	PsycPRwf_1281	-	hypothetical protein
1268	 40.24	-1	1578204..1580360	-	718	148653085	-	PsycPRwf_1282	-	hypothetical protein
1269	 47.37	0	1581011..1581295	-	94	148653086	-	PsycPRwf_1283	-	hypothetical protein
1270	 40.21	-1	1581305..1581973	-	222	148653087	-	PsycPRwf_1284	-	hypothetical protein
1271	 45.98	0	1581973..1583601	-	542	148653088	-	PsycPRwf_1285	-	hypothetical protein
1272	 48.21	0	1583610..1584281	-	223	148653089	-	PsycPRwf_1286	-	hypothetical protein
1273	 43.78	0	1584278..1585186	-	302	148653090	-	PsycPRwf_1287	-	hypothetical protein
1274	 43.16	0	1585177..1585695	-	172	148653091	-	PsycPRwf_1288	-	hypothetical protein
1275	 45.89	0	1585707..1586327	-	206	148653092	-	PsycPRwf_1289	-	hypothetical protein
1276	 45.21	0	1586560..1587384	+	274	148653093	-	PsycPRwf_1290	-	hypothetical protein
1277	 44.34	0	1587396..1588031	-	211	148653094	-	PsycPRwf_1291	-	hypothetical protein
1278	 43.79	0	1588033..1589505	-	490	148653095	-	PsycPRwf_1292	-	hypothetical protein
1279	 40.61	-1	1589489..1589818	-	109	148653096	-	PsycPRwf_1293	-	hypothetical protein
1280	 38.55	-2	1589815..1590255	-	146	148653097	-	PsycPRwf_1294	-	hypothetical protein
1281	 45.19	0	1590265..1590804	-	179	148653098	-	PsycPRwf_1295	-	hypothetical protein
1282	 45.71	0	1590888..1591784	-	298	148653099	-	PsycPRwf_1296	-	hypothetical protein
1283	 44.98	0	1591818..1593191	-	457	148653100	-	PsycPRwf_1297	-	hypothetical protein
1284	 41.29	-1	1593277..1594143	-	288	148653101	-	PsycPRwf_1298	-	putative lipoprotein
1285	 46.04	0	1594153..1597788	-	1211	148653102	-	PsycPRwf_1299	-	hypothetical protein
1286	 43.51	0	1597945..1598337	-	130	148653103	-	PsycPRwf_1300	-	hypothetical protein
1287	 44.89	0	1598927..1599904	-	325	148653104	-	PsycPRwf_1302	-	hypothetical protein
1288	 41.23	-1	1599904..1601157	-	417	148653105	-	PsycPRwf_1303	-	hypothetical protein
1289	 42.59	0	1601214..1601645	-	143	148653106	-	PsycPRwf_1304	-	hypothetical protein
1290	 45.16	0	1601747..1603555	-	602	148653107	-	PsycPRwf_1305	-	hypothetical protein
1291	 43.74	0	1603753..1604319	-	188	148653108	-	PsycPRwf_1306	-	hypothetical protein
1292	 45.30	0	1604316..1605518	-	400	148653109	-	PsycPRwf_1307	-	hypothetical protein
1293	 46.17	0	1605812..1607143	-	443	148653110	-	PsycPRwf_1308	-	hypothetical protein
1294	 45.94	0	1607228..1608790	-	520	148653111	-	PsycPRwf_1309	-	hypothetical protein
1295	 45.33	0	1608802..1609326	-	174	148653112	-	PsycPRwf_1310	-	hypothetical protein
1296	 47.87	0	1609319..1610329	-	336	148653113	-	PsycPRwf_1311	-	hypothetical protein
1297	 44.80	0	1610344..1611276	-	310	148653114	-	PsycPRwf_1312	-	hypothetical protein
1298	 45.36	0	1611503..1611685	+	60	148653115	-	PsycPRwf_1313	-	hypothetical protein
1299	 41.41	-1	1611738..1612034	+	98	148653116	-	PsycPRwf_1314	-	transposase IS3/IS911 family protein
1300	 43.86	0	1612049..1612903	+	284	148653117	-	PsycPRwf_1315	-	integrase catalytic subunit
1301	 44.62	0	1612917..1613102	+	61	148653118	-	PsycPRwf_1316	-	hypothetical protein
1302	 41.45	-1	1613346..1614146	-	266	148653119	-	PsycPRwf_1317	-	hypothetical protein
1303	 34.64	-2	1614355..1615122	+	255	148653120	-	PsycPRwf_1318	-	hypothetical protein
1304	 34.02	-2	1615183..1615473	-	96	148653121	-	PsycPRwf_1319	-	hypothetical protein
1305	 33.33	-2	1615677..1616273	-	198	148653122	-	PsycPRwf_1320	-	hypothetical protein
1306	 47.73	0	1616513..1619464	-	983	148653123	-	PsycPRwf_1321	-	hypothetical protein
1307	 37.34	-2	1619547..1620245	-	232	148653124	-	PsycPRwf_1322	-	LrgB family protein
1308	 38.01	-2	1620255..1620746	-	163	148653125	-	PsycPRwf_1323	-	LrgA family protein
1309	 38.10	-2	1620882..1621763	+	293	148653126	-	PsycPRwf_1324	-	LysR family transcriptional regulator
1310	 43.46	0	1621773..1625111	-	1112	148653127	-	PsycPRwf_1325	-	type III restriction enzyme, res subunit
1311	 34.50	-2	1625154..1626095	-	313	148653128	-	PsycPRwf_1326	-	hypothetical protein
1312	 37.35	-2	1626119..1627414	-	431	148653129	-	PsycPRwf_1327	-	restriction modification system DNA specificity subunit
1313	 44.36	0	1627414..1629834	-	806	148653130	-	PsycPRwf_1328	-	N-6 DNA methylase
1314	 42.68	0	1630037..1630924	-	295	148653131	-	PsycPRwf_1329	-	hypothetical protein
1315	 41.45	-1	1630924..1631613	-	229	148653132	-	PsycPRwf_1330	-	hypothetical protein
1316	 45.41	0	1631735..1632181	-	148	148653133	-	PsycPRwf_1331	-	VRR-NUC
1317	 43.94	0	1632420..1632683	-	87	148653134	-	PsycPRwf_1332	-	hypothetical protein
1318	 46.62	0	1632674..1633132	-	152	148653135	-	PsycPRwf_1333	-	hypothetical protein
1319	 44.74	0	1633147..1633707	-	186	148653136	-	PsycPRwf_1334	-	hypothetical protein
1320	 37.63	-2	1633724..1634608	-	294	148653137	-	PsycPRwf_1335	-	hypothetical protein
1321	 41.72	-1	1634646..1635110	-	154	148653138	-	PsycPRwf_1336	-	hypothetical protein
1322	 44.64	0	1635111..1635455	-	114	148653139	-	PsycPRwf_1337	-	hypothetical protein
1323	 39.22	-1	1635458..1635661	-	67	148653140	-	PsycPRwf_1338	-	hypothetical protein
1324	 43.79	0	1635760..1636419	+	219	148653141	-	PsycPRwf_1339	-	putative prophage repressor
1325	 35.23	-2	1636655..1637497	+	280	148653142	-	PsycPRwf_1340	-	hypothetical protein
1326	 37.21	-2	1637501..1638403	+	300	148653143	-	PsycPRwf_1341	-	hypothetical protein
1327	 35.62	-2	1638533..1639057	+	174	148653144	-	PsycPRwf_1342	-	hypothetical protein
1328	 40.32	-1	1639382..1640698	+	438	148653145	-	PsycPRwf_1343	-	Na+/H+ antiporter NhaC
1329	 38.99	-2	1641286..1641621	+	111	148653146	-	PsycPRwf_1344	-	hypothetical protein
1330	 43.95	0	1641944..1642960	+	338	148653147	-	PsycPRwf_1345	-	Phage-related protein endonuclease-like protein
1331	 36.61	-2	1642960..1643325	+	121	148653148	-	PsycPRwf_1346	-	hypothetical protein
1332	 44.38	0	1643318..1644286	+	322	148653149	-	PsycPRwf_1347	-	hypothetical protein
1333	 39.17	-1	1644347..1645168	+	273	148653150	-	PsycPRwf_1348	-	hypothetical protein
1334	 43.73	0	1645169..1645495	+	108	148653151	-	PsycPRwf_1349	-	hypothetical protein
1335	 41.04	-1	1645933..1646568	+	211	148653152	-	PsycPRwf_1350	-	hypothetical protein
1336	 41.32	-1	1647279..1648430	-	383	148653153	-	PsycPRwf_1351	-	hypothetical protein
1337	 41.05	-1	1648437..1648721	+	94	148653154	-	PsycPRwf_1352	-	hypothetical protein
1338	 40.66	-1	1648962..1650053	-	363	148653155	-	PsycPRwf_1353	-	5-methylcytosine-specific restriction enzyme subunit McrC
1339	 35.90	-2	1650055..1650249	-	64	148653156	-	PsycPRwf_1354	-	hypothetical protein
1340	 41.41	-1	1650348..1650644	+	98	148653157	-	PsycPRwf_1355	-	transposase IS3/IS911 family protein
1341	 43.86	0	1650888..1651742	-	284	148653158	-	PsycPRwf_1356	-	integrase catalytic subunit
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.