IslandPathversion 1.0

IslandPath Analysis: Psychrobacter sp. PRwf-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.93 STD DEV: 3.38
Psychrobacter sp. PRwf-1, complete genome - 1..2978976
2370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1095	 47.88	0	1355315..1356799	+	494	148652912	-	PsycPRwf_1105	-	major facilitator transporter
1096	 46.47	0	1357161..1359428	+	755	148652913	-	PsycPRwf_1106	-	TonB-dependent receptor, plug
1097	 51.37	+1	1359615..1361078	-	487	148652914	-	PsycPRwf_1107	-	uroporphyrin-III C-methyltransferase
1098	 45.08	0	1361295..1361924	-	209	148652915	-	PsycPRwf_1108	-	phosphoadenosine phosphosulfate reductase
1099	 50.75	+1	1362025..1362627	-	200	148652916	-	PsycPRwf_1109	-	hypothetical protein
1100	 47.89	0	1362620..1364302	-	560	148652917	-	PsycPRwf_1110	-	nitrite and sulphite reductase 4Fe-4S region
1101	 49.29	0	1364602..1365861	+	419	148652918	-	PsycPRwf_1111	-	sulfate adenylyltransferase
1102	 45.33	0	1366402..1366776	+	124	148652919	-	PsycPRwf_1112	-	hypothetical protein
1103	 51.64	+1	1367055..1368491	+	478	148652920	-	PsycPRwf_1113	-	phospholipase D/transphosphatidylase
1104	 47.32	0	1368634..1369398	-	254	148652921	-	PsycPRwf_1114	-	hypothetical protein
1105	 46.18	0	1369395..1372718	-	1107	148652922	-	PsycPRwf_1115	-	HsdR family type I site-specific deoxyribonuclease
1106	 38.31	-2	1372931..1373452	-	173	148652923	-	PsycPRwf_1116	-	hypothetical protein
1107	 41.38	-1	1373670..1373930	+	86	148652924	-	PsycPRwf_1117	-	transposase IS3/IS911 family protein
1108	 42.13	-1	1374017..1374391	+	124	148652925	-	PsycPRwf_1118	-	hypothetical protein
1109	 41.41	-1	1374444..1374740	+	98	148652926	-	PsycPRwf_1119	-	transposase IS3/IS911 family protein
1110	 43.86	0	1374755..1375609	+	284	148652927	-	PsycPRwf_1120	-	integrase catalytic subunit
1111	 36.81	-2	1375724..1376701	-	325	148652928	-	PsycPRwf_1121	-	hypothetical protein
1112	 42.45	-1	1377399..1377815	-	138	148652929	-	PsycPRwf_1123	-	hypothetical protein
1113	 38.87	-2	1377817..1379784	-	655	148652930	-	PsycPRwf_1124	-	hypothetical protein
1114	 37.39	-2	1379784..1381385	-	533	148652931	-	PsycPRwf_1125	-	phage integrase family protein
1115	 39.04	-2	1381372..1382562	-	396	148652932	-	PsycPRwf_1126	-	phage integrase family protein
1116	 49.06	0	1382751..1383659	-	302	148652933	-	PsycPRwf_1127	-	N-6 DNA methylase
1117	 38.61	-2	1383709..1384182	-	157	148652934	-	PsycPRwf_1128	-	hypothetical protein
1118	 47.85	0	1384631..1385002	+	123	148652935	-	PsycPRwf_1129	-	hypothetical protein
1119	 53.79	+2	1385158..1385685	-	175	148652936	-	PsycPRwf_1130	-	hypothetical protein
1120	 49.66	+1	1385771..1386358	-	195	148652937	-	PsycPRwf_1131	-	hypothetical protein
1121	 47.54	0	1386841..1387959	+	372	148652938	-	PsycPRwf_1132	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1122	 50.18	+1	1388212..1389351	+	379	148652939	-	PsycPRwf_1133	-	sulfate ABC transporter, periplasmic sulfate-binding protein
1123	 49.43	+1	1389590..1390471	+	293	148652940	-	PsycPRwf_1134	-	sulfate ABC transporter, inner membrane subunit CysT
1124	 51.44	+1	1390578..1391516	+	312	148652941	-	PsycPRwf_1135	-	sulfate ABC transporter, inner membrane subunit CysW
1125	 49.38	+1	1391637..1392359	+	240	148652942	-	PsycPRwf_1136	-	sulfate ABC transporter, ATPase subunit
1126	 51.19	+1	1392552..1393475	-	307	148652943	-	PsycPRwf_1137	-	UspA domain-containing protein
1127	 48.89	0	1393640..1393909	-	89	148652944	-	PsycPRwf_1138	-	regulatory protein, ArsR
1128	 48.89	0	1394235..1395539	+	434	148652945	-	PsycPRwf_1139	-	arsenical pump membrane protein
1129	 47.83	0	1395812..1396342	+	176	148652946	-	PsycPRwf_1140	-	protein tyrosine phosphatase
1130	 47.73	0	1396508..1397257	+	249	148652947	-	PsycPRwf_1141	-	arsenate resistance ArsH
1131	 45.89	0	1397309..1397746	+	145	148652948	-	PsycPRwf_1142	-	MgtC/SapB transporter
1132	 46.94	0	1397747..1398415	+	222	148652949	-	PsycPRwf_1143	-	hypothetical protein
1133	 46.70	0	1398523..1399869	-	448	148652950	-	PsycPRwf_1144	-	glutamate dehydrogenase
1134	 46.10	0	1400106..1401554	-	482	148652951	-	PsycPRwf_1145	-	EmrB/QacA family drug resistance transporter
1135	 46.01	0	1401765..1402616	+	283	148652952	-	PsycPRwf_1146	-	putative glutathione S-transferase YghU
1136	 49.00	0	1403100..1404650	+	516	148652953	-	PsycPRwf_1147	-	DEAD/DEAH box helicase domain-containing protein
1137	 42.86	0	1404831..1405544	+	237	148652954	-	PsycPRwf_1148	-	DSBA oxidoreductase
1138	 51.47	+1	1405630..1407129	-	499	148652955	-	PsycPRwf_1149	-	L-serine dehydratase 1
1139	 47.87	0	1407685..1408530	+	281	148652956	-	PsycPRwf_1150	-	extracellular solute-binding protein
1140	 47.97	0	1408527..1409264	+	245	148652957	-	PsycPRwf_1151	-	polar amino acid ABC transporter, inner membrane subunit
1141	 48.92	0	1409307..1410050	+	247	148652958	-	PsycPRwf_1152	-	ABC transporter related
1142	 49.92	+1	1410148..1410798	-	216	148652959	-	PsycPRwf_1153	-	glutamine amidotransferase of anthranilate synthase
1143	 48.97	0	1410899..1412311	-	470	148652960	-	PsycPRwf_1154	-	anthranilate synthase
1144	 49.04	0	1412423..1412734	-	103	148652961	-	PsycPRwf_1155	-	Trp operon repressor
1145	 45.90	0	1412904..1413500	-	198	148652962	-	PsycPRwf_1156	-	hypothetical protein
1146	 48.81	0	1413620..1415881	-	753	148652963	-	PsycPRwf_1157	-	ornithine decarboxylase
1147	 48.65	0	1416252..1417511	+	419	148652964	-	PsycPRwf_1158	-	hypothetical protein
1148	 46.37	0	1417591..1418334	+	247	148652965	-	PsycPRwf_1159	-	hypothetical protein
1149	 45.23	0	1418474..1419364	-	296	148652966	-	PsycPRwf_1160	-	dethiobiotin synthase
1150	 43.52	0	1419511..1420413	-	300	148652967	-	PsycPRwf_1161	-	PhzF family phenazine biosynthesis protein
1151	 45.71	0	1420451..1421137	-	228	148652968	-	PsycPRwf_1162	-	hypothetical protein
1152	 46.09	0	1421205..1421972	-	255	148652969	-	PsycPRwf_1163	-	dethiobiotin synthase
1153	 44.69	0	1421969..1423342	-	457	148652970	-	PsycPRwf_1164	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1154	 45.05	0	1423690..1424508	-	272	148652971	-	PsycPRwf_1165	-	integrase catalytic subunit
1155	 43.43	0	1424559..1424855	-	98	148652972	-	PsycPRwf_1166	-	transposase IS3/IS911 family protein
1156	 42.05	-1	1424908..1430562	-	1884	148652973	-	PsycPRwf_1167	-	putative outer membrane adhesin like proteiin
1157	 45.76	0	1431004..1431864	+	286	148652974	-	PsycPRwf_1168	-	alpha/beta hydrolase fold
1158	 40.90	-1	1431923..1432279	+	118	148652975	-	PsycPRwf_1169	-	hypothetical protein
1159	 46.31	0	1432369..1433640	+	423	148652976	-	PsycPRwf_1170	-	NADH:flavin oxidoreductase/NADH oxidase
1160	 48.44	0	1433666..1434115	-	149	148652977	-	PsycPRwf_1171	-	HxlR family transcriptional regulator
1161	 46.11	0	1434184..1434504	-	106	148652978	-	PsycPRwf_1172	-	putative polyhydroxyalkanoic acid system protein
1162	 44.29	0	1434540..1435196	-	218	148652979	-	PsycPRwf_1173	-	TetR family transcriptional regulator
1163	 43.42	0	1435493..1436047	+	184	148652980	-	PsycPRwf_1174	-	beta-Ig-H3/fasciclin
1164	 45.49	0	1436105..1436869	+	254	148652981	-	PsycPRwf_1175	-	short-chain dehydrogenase/reductase SDR
1165	 44.12	0	1436937..1438670	+	577	148652982	-	PsycPRwf_1176	-	amine oxidase
1166	 43.83	0	1439682..1441043	+	453	148652983	-	PsycPRwf_1177	-	cyclopropane-fatty-acyl-phospholipid synthase
1167	 44.60	0	1441092..1441508	+	138	148652984	-	PsycPRwf_1178	-	membrane protein-like protein
1168	 48.72	0	1441614..1442198	-	194	148652985	-	PsycPRwf_1179	-	NAD(P)H dehydrogenase (quinone)
1169	 45.02	0	1442283..1443086	-	267	148652986	-	PsycPRwf_1180	-	aldo/keto reductase
1170	 44.22	0	1443217..1444116	+	299	148652987	-	PsycPRwf_1181	-	LysR family transcriptional regulator
1171	 44.12	0	1444145..1444858	-	237	148652988	-	PsycPRwf_1182	-	hypothetical protein
1172	 41.77	-1	1445006..1446688	-	560	148652989	-	PsycPRwf_1183	-	AMP-dependent synthetase and ligase
1173	 50.33	+1	1446865..1447935	-	356	148652990	-	PsycPRwf_1184	-	L-carnitine dehydratase/bile acid-inducible protein F
1174	 46.27	0	1447928..1450099	-	723	148652991	-	PsycPRwf_1185	-	3-hydroxyacyl-CoA dehydrogenase, NAD-binding
1175	 49.05	0	1450197..1451405	-	402	148652992	-	PsycPRwf_1186	-	acetyl-CoA acetyltransferase
1176	 45.40	0	1451536..1452687	-	383	148652993	-	PsycPRwf_1187	-	acyl-CoA dehydrogenase domain-containing protein
1177	 42.44	-1	1452874..1453521	+	215	148652994	-	PsycPRwf_1188	-	TetR family transcriptional regulator
1178	 47.16	0	1454018..1455283	+	421	148652995	-	PsycPRwf_1189	-	phage integrase family protein
1179	 39.20	-1	1455303..1455677	-	124	148652996	-	PsycPRwf_1190	-	hypothetical protein
1180	 49.54	+1	1455956..1456282	-	108	148652997	-	PsycPRwf_1191	-	hypothetical protein
1181	 46.69	0	1456409..1457935	-	508	148652998	-	PsycPRwf_1192	-	aldehyde dehydrogenase
1182	 46.05	0	1458354..1459619	+	421	148652999	-	PsycPRwf_1193	-	manganese transporter NRAMP
1183	 45.95	0	1459730..1460989	+	419	148653000	-	PsycPRwf_1194	-	manganese transporter NRAMP
1184	 45.69	0	1461221..1461916	+	231	148653001	-	PsycPRwf_1195	-	hypothetical protein
1185	 47.66	0	1461964..1462926	+	320	148653002	-	PsycPRwf_1196	-	LysR family transcriptional regulator
1186	 46.53	0	1463221..1464114	+	297	148653003	prpB	PsycPRwf_1197	-	2-methylisocitrate lyase
1187	 48.63	0	1464312..1465442	+	376	148653004	-	PsycPRwf_1198	-	methylcitrate synthase
1188	 48.93	0	1465657..1468368	+	903	148653005	-	PsycPRwf_1199	-	aconitate hydratase
1189	 48.80	0	1468484..1469737	+	417	148653006	-	PsycPRwf_1200	-	putative AcnD-accessory protein PrpF
1190	 44.12	0	1469953..1471806	+	617	148653007	-	PsycPRwf_1201	-	ABC transporter related
1191	 44.50	0	1471868..1472458	+	196	148653008	-	PsycPRwf_1202	-	GCN5-related N-acetyltransferase
1192	 47.05	0	1472582..1473922	+	446	148653009	-	PsycPRwf_1203	-	hypothetical protein
1193	 44.09	0	1474076..1475023	+	315	148653010	-	PsycPRwf_1204	-	sterol desaturase-like protein
1194	 49.39	+1	1475125..1476687	+	520	148653011	-	PsycPRwf_1205	-	GTP-binding protein, HSR1-related
45.93	MEAN

3.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.