IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
397	 40.58	0	479797..480996	-	399	197284312	proV	PMI0412	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
398	 33.95	-1	481605..482573	-	322	197284313	nrdF	PMI0413	-	ribonucleoside-diphosphate reductase beta chain
399	 38.65	0	482599..484725	-	708	197284314	nrdE	PMI0414	-	ribonucleoside-diphosphate reductase alpha chain
400	 41.48	0	484754..485158	-	134	197284315	nrdI	PMI0415	-	NrdI protein
401	 42.67	0	485170..485394	-	74	197284316	nrdH	PMI0416	-	glutaredoxin-like protein
402	 38.61	0	485676..486149	+	157	197284317	ogt	PMI0417	-	methylated-DNA--protein-cysteine methyltransferase
403	 39.52	0	486347..486556	+	69	197284318	cspE	PMI0418	-	cold shock protein
404	 45.60	+1	487014..487388	-	124	197284319	crcB	PMI0419	-	membrane protein (protein CrcB)
405	 43.27	0	487404..488369	-	321	197284320	lipA	PMI0420	-	lipoic acid synthetase
406	 41.24	0	488471..489115	-	214	197284321	lipB	PMI0421	-	lipoyltransferase
407	 39.33	0	489467..489733	-	88	197284322	-	PMI0422	-	hypothetical protein
408	 40.10	0	489929..491140	-	403	197284323	dacA	PMI0423	-	penicillin-binding protein
409	 43.59	0	491267..492280	-	337	197284324	rlpA	PMI0424	-	rare lipoprotein A precursor
410	 40.61	0	492291..493403	-	370	197284325	rodA	PMI0425	-	rod shape-determining protein
411	 42.67	0	493408..495303	-	631	197284326	pbpA	PMI0426	-	penicillin-binding protein
412	 46.07	+1	495341..495811	-	156	197284327	-	PMI0427	-	hypothetical protein
413	 41.51	0	495814..496131	-	105	197284328	-	PMI0428	-	hypothetical protein
414	 36.11	0	496531..497286	+	251	197284329	-	PMI0429	-	hypothetical protein
415	 41.22	0	497300..497971	-	223	197284330	nadD	PMI0430	-	nicotinate-nucleotide adenylyltransferase
416	 41.16	0	497964..498998	-	344	197284331	holA	PMI0431	-	DNA polymerase III delta subunit
417	 42.62	0	498995..499543	-	182	197284332	rlpB	PMI0432	-	rare lipoprotein B
418	 42.43	0	499556..502138	-	860	197284333	leuS	PMI0433	-	leucyl-tRNA synthetase
419	 38.71	0	502498..503223	-	241	197284334	gltL	PMI0434	-	glutamate/aspartate ABC transporter, ATP-binding protein
420	 37.78	0	503224..503898	-	224	197284335	gltK	PMI0435	-	glutamate/aspartate ABC transporter, permease protein
421	 41.57	0	503898..504638	-	246	197284336	gltJ	PMI0436	-	glutamate/aspartate ABC transporter, permease protein
422	 39.37	0	504757..505650	-	297	197284337	gltI	PMI0437	-	glutamate/aspartate ABC transporter, substrate-binding protein
423	 42.29	0	505995..506396	+	133	197284338	-	PMI0438	-	metal resistance protein
424	 42.02	0	506477..508513	+	678	197284339	-	PMI0439	-	metal resistance protein
425	 39.34	0	508513..509244	+	243	197284340	-	PMI0440	-	metal resistance protein
426	 39.48	0	509244..509747	+	167	197284341	-	PMI0441	-	metal resistance protein
427	 34.06	-1	509756..510439	-	227	197284342	-	PMI0442	-	hypothetical protein
428	 39.63	0	510516..512039	-	507	197284343	cutE	PMI0443	-	apolipoprotein N-acyltransferase (copper homeostasis protein)
429	 40.59	0	512047..512928	-	293	197284344	corC	PMI0444	-	magnesium and cobalt efflux protein
430	 39.32	0	512999..513466	-	155	197284345	-	PMI0445	-	hypothetical protein
431	 44.07	0	513459..514520	-	353	197284346	-	PMI0446	-	PhoH-like ATP-binding protein
432	 41.44	0	514549..515979	-	476	197284347	miaB	PMI0447	-	MiaB protein (methylthiolation of isopentenylated A37 derivatives in rRNA)
433	 43.63	0	516195..517379	+	394	197284348	ubiF	PMI0448	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
434	 41.03	0	517428..518258	-	276	197284349	-	PMI0449	-	esterase
435	 44.20	0	518312..519424	-	370	197284350	adhC	PMI0450	-	alcohol dehydrogenase (glutathione-dependent formaldehyde dehydrogenase)
436	 45.29	+1	519444..519719	-	91	197284351	-	PMI0451	-	hypothetical protein
437	 42.25	0	521124..522356	-	410	197284352	nagC	PMI0452	-	N-acetylglucosamine regulatory protein
438	 39.95	0	522366..523529	-	387	197284353	nagA	PMI0453	-	N-acetylglucosamine-6-phosphate deacetylase
439	 40.89	0	523652..524458	-	268	197284354	nagB	PMI0454	-	glucosamine-6-phosphate deaminase
440	 43.45	0	524804..526849	+	681	197284355	nagE	PMI0455	-	N-acetylglucosamine-specific PTS system, EIICBA component
441	 36.53	0	527077..528078	-	333	197284356	-	PMI0456	-	integrase
442	 37.40	0	528035..528280	-	81	197284357	-	PMI0456A	-	excisionase
443	 34.51	-1	528277..528615	-	112	197284358	-	PMI0457	-	phage recombination protein
444	 26.55	-2	528608..528784	-	58	197284359	-	PMI0458	-	hypothetical protein
445	 35.19	0	528774..528935	-	53	197284360	-	PMI0459	-	hypothetical protein
446	 25.90	-2	528991..529716	-	241	197284361	-	PMI0460	-	hypothetical protein
447	 36.50	0	529745..530281	-	178	197284362	-	PMI0461	-	hypothetical protein
448	 38.33	0	530288..530467	-	59	197284363	-	PMI0462	-	hypothetical protein
449	 38.97	0	530495..530689	-	64	197284364	-	PMI0463	-	hypothetical protein
450	 31.07	-1	530729..530905	-	58	197284365	-	PMI0464	-	hypothetical protein
451	 43.00	0	531420..532226	-	268	197284366	recT	PMI0467	-	phage DNA recombinase
452	 40.90	0	532219..533037	-	272	197284367	-	PMI0468	-	phage-related exonuclease
453	 41.96	0	533034..533288	-	84	197284368	-	PMI0469	-	hypothetical protein
454	 41.67	0	533285..533548	-	87	197284369	-	PMI0470	-	hypothetical protein
455	 42.95	0	533556..533711	-	51	197284370	-	PMI0471	-	hypothetical protein
456	 24.56	-2	533800..534027	-	75	197284371	-	PMI0472	-	hypothetical protein
457	 41.30	0	534150..534425	-	91	197284372	-	PMI0473	-	hypothetical protein
458	 39.81	0	534593..534808	+	71	197284373	-	PMI0474	-	hypothetical protein
459	 29.63	-2	534805..535020	-	71	197284374	-	PMI0475	-	hypothetical protein
460	 37.86	0	535180..535488	-	102	197284375	nun	PMI0476	-	transcription termination factor
461	 42.29	0	535490..535768	-	92	197284376	-	PMI0477	-	hypothetical protein
462	 31.37	-1	536291..536596	-	101	197284377	-	PMI0478	-	hypothetical protein
463	 36.18	0	536627..537328	-	233	197284378	ci	PMI0479	-	phage reprossor
464	 37.10	0	537436..537621	+	61	197284379	-	PMI0480	-	phage regulatory protein
465	 38.22	0	537742..538089	+	115	197284380	-	PMI0481	-	phage regulatory protein
466	 39.06	0	538355..539122	+	255	197284381	-	PMI0482	-	phage replication protein
467	 41.63	0	539122..540507	+	461	197284382	-	PMI0483	-	phage replicative DNA helicase
468	 41.11	0	540533..540982	+	149	197284383	-	PMI0484	-	phage protein
469	 41.58	0	541061..541351	+	96	197284384	-	PMI0485	-	phage protein
470	 40.06	0	541348..541704	+	118	197284385	-	PMI0486	-	phage holliday junction resolvase
471	 36.97	0	541704..542336	+	210	197284386	-	PMI0487	-	phage antitermination protein Q
472	 36.02	0	542647..543168	+	173	197284387	-	PMI0488	-	phage membrane protein
473	 39.01	0	543327..543749	+	140	197284388	-	PMI0489	-	phage protein
474	 40.58	0	543797..544072	+	91	197284389	-	PMI0490	-	phage protein
475	 42.68	0	544072..544542	+	156	197284390	-	PMI0491	-	phage lysozome
476	 36.48	0	544524..544682	+	52	197284391	-	PMI0491A	-	hypothetical protein
477	 42.86	0	544685..545146	+	153	197284392	-	PMI0492	-	phage endopeptidase
478	 39.65	0	545287..546078	+	263	197284393	-	PMI0493	-	phage protein
479	 43.48	0	546075..546281	+	68	197284394	-	PMI0494	-	hypothetical protein
480	 38.36	0	546278..546436	+	52	197284395	-	PMI0495	-	hypothetical protein
481	 44.50	0	546464..547072	+	202	197284396	-	PMI0496	-	phage protein
482	 45.36	+1	547075..548562	+	495	197284397	-	PMI0497	-	phage terminase large subunit
483	 43.47	0	548562..549932	+	456	197284398	-	PMI0498	-	phage protein
484	 42.60	0	549929..551050	+	373	197284399	-	PMI0499	-	phage protein
485	 44.62	+1	551162..551923	+	253	197284400	-	PMI0500	-	phage protein
486	 44.23	0	551937..552890	+	317	197284401	-	PMI0501	-	phage protein
487	 42.08	0	553217..553696	+	159	197284402	-	PMI0503	-	phage protein
488	 42.45	0	553699..554049	+	116	197284403	-	PMI0504	-	phage protein
489	 38.83	0	554051..554632	+	193	197284404	-	PMI0505	-	hypothetical protein
490	 39.80	0	554629..555030	+	133	197284405	-	PMI0506	-	phage protein
491	 41.25	0	555076..555732	+	218	197284406	-	PMI0507	-	phage protein
492	 38.56	0	555784..556089	+	101	197284407	-	PMI0508	-	phage protein
493	 42.03	0	556116..556391	+	91	197284408	-	PMI0509	-	phage protein
494	 32.48	-1	556617..556850	+	77	197284409	-	PMI0510	-	phage protein
495	 36.05	0	556857..557666	+	269	197284410	-	PMI0511	-	phage protein
496	 38.25	0	557917..558750	-	277	197284411	ant	PMI0512	-	phage antirepressor protein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.