IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
326	 41.07	0	388974..389930	-	318	197284241	gshB	PMI0340	-	glutathione synthetase
327	 40.16	0	389941..390672	-	243	197284242	-	PMI0341	-	hypothetical protein
328	 33.18	-1	390920..391552	+	210	197284243	-	PMI0342	-	type IV prepilin-like leader peptidase
329	 39.35	0	391654..392301	-	215	197284244	-	PMI0343	-	hypothetical protein
330	 37.05	0	392307..393194	-	295	197284245	-	PMI0344	-	metallo-beta-lactamase superfamily protein
331	 42.35	0	393284..394204	+	306	197284246	-	PMI0345	-	LysR-family transcriptional regulator
332	 39.91	0	394181..395107	-	308	197284247	lysR	PMI0346	-	LysR-family transcriptional regulator
333	 41.77	0	395217..396461	+	414	197284248	lysA	PMI0347	-	diaminopimelate decarboxylase
334	 42.85	0	396595..399042	-	815	197284249	fadE	PMI0348	-	acyl-coenzyme A dehydrogenase
335	 39.55	0	399281..399859	+	192	197284250	gmhA	PMI0349	-	Phosphoheptose isomerase
336	 39.97	0	399918..400685	+	255	197284251	-	PMI0350	-	amidotransferase
337	 34.26	-1	400656..401408	-	250	197284252	-	PMI0351	-	hypothetical protein
338	 42.13	0	401824..403164	+	446	197284253	nqrA	PMI0352	-	Na(+)-translocating NADH-quinone reductase subunit A
339	 43.42	0	403168..404406	+	412	197284254	nqrB	PMI0353	-	Na(+)-translocating NADH-quinone reductase subunit B
340	 42.62	0	404399..405184	+	261	197284255	nqrC	PMI0354	-	Na+-translocating NADH-quinone reductase subunit C
341	 41.27	0	405177..405806	+	209	197284256	nqrD	PMI0355	-	Na+-translocating NADH-quinone reductase subunit D
342	 39.53	0	405812..406408	+	198	197284257	nqrE	PMI0356	-	Na+-translocating NADH-quinone reductase subunit E
343	 40.18	0	406425..407651	+	408	197284258	nqrF	PMI0357	-	Na(+)-translocating NADH-quinone reductase subunit F
344	 38.51	0	407737..408759	+	340	197284259	apbE	PMI0358	-	thiamine biosynthesis lipoprotein
345	 37.28	0	408779..409006	+	75	197284260	-	PMI0359	-	hypothetical protein
346	 36.62	0	409163..409375	-	70	197284261	-	PMI0360	-	general stress response protein
347	 38.60	0	409469..410341	-	290	197284262	-	PMI0361	-	phosphodiesterase
348	 39.58	0	410577..411632	+	351	197284263	dinB	PMI0362	-	DNA polymerase IV
349	 38.70	0	411709..413871	-	720	197284264	-	PMI0363	-	TonB-dependent ferric siderephore receptor
350	 40.60	0	414121..415578	-	485	197284265	pepD	PMI0364	-	aminoacyl-histidine dipeptidase
351	 41.77	0	415932..416393	+	153	197284266	gpt	PMI0366	-	xanthine-guanine phosphoribosyltransferase
352	 38.69	0	416626..417876	+	416	197284267	yafA	PMI0367	-	esterase
353	 36.32	0	417948..418349	+	133	197284268	crl	PMI0368	-	curlin genes transcriptional regulator
354	 43.12	0	418462..419565	+	367	197284269	proB	PMI0369	-	glutamate 5-kinase
355	 43.14	0	419577..420830	+	417	197284270	proA	PMI0370	-	gamma-glutamyl phosphate reductase
356	 34.50	-1	420975..421487	+	170	197284271	aroL	PMI0371	-	shikimate kinase
357	 40.19	0	421594..423750	+	718	197284272	aas	PMI0372	-	Aas bifunctional protein [includes: 2-acylglycerophosphoethanolamine acyltransferase and acyl-[acyl-carrier-protein] synthetase
358	 41.06	0	423750..424952	+	400	197284273	-	PMI0373	-	MFS-family transporter
359	 40.24	0	424985..425491	+	168	197284274	-	PMI0374	-	competence-damaged protein
360	 40.82	0	425599..426666	+	355	197284275	recA	PMI0375	-	protein RecA (recombinase A)
361	 40.79	0	427567..430194	+	875	197284276	alaS	PMI0376	-	alanyl-tRNA synthetase
362	 42.86	0	430412..430600	+	62	197284277	csrA	PMI0377	-	carbon storage regulator
363	 38.65	0	431843..433423	+	526	197284278	gshA	PMI0378	-	glutamate--cysteine ligase
364	 39.73	0	433589..434104	+	171	197284279	luxS	PMI0379	-	S-ribosylhomocysteine lyase (autoinducer-2 production protein)
365	 38.90	0	434235..435509	-	424	197284280	-	PMI0380	-	transporter of ion substrates
366	 38.70	0	435545..436345	-	266	197284281	-	PMI0381	-	hypothetical protein
367	 42.80	0	436518..437879	+	453	197284282	ffh	PMI0382	-	signal recognition particle protein
368	 46.59	+1	438017..438265	+	82	197284283	rpsP	PMI0383	-	30S ribosomal protein S16
369	 41.03	0	438284..438829	+	181	197284284	rimM	PMI0384	-	16S rRNA processing protein
370	 47.54	+1	438869..439621	+	250	197284285	trmD	PMI0385	-	tRNA (guanine-N1)-methyltransferase
371	 43.22	0	439674..440027	+	117	197284286	rplS	PMI0386	-	50S ribosomal subunit protein L19
372	 39.00	0	440479..441573	+	364	197284287	aroF	PMI0387	-	phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive
373	 38.22	0	441609..442733	+	374	197284288	tyrA	PMI0388	-	T-protein [includes: chorismate mutase and prephenate dehydrogenase]
374	 36.83	0	443581..444924	+	447	197284289	dcuB	PMI0389	-	anaerobic C4-dicarboxylate transporter
375	 37.65	0	445018..446175	-	385	197284290	pheA	PMI0390	-	P-protein [includes: chorismate mutase and prephenate dehydratase]
376	 34.23	-1	446485..446820	-	111	197284291	-	PMI0391	-	sigma 54 modulation protein
377	 42.18	0	447090..447824	-	244	197284292	-	PMI0392	-	lipoprotein
378	 43.15	0	447955..448932	+	325	197284293	rluD	PMI0393	-	ribosomal large subunit pseudouridine synthase D
379	 42.49	0	448933..449664	+	243	197284294	-	PMI0394	-	hypothetical protein
380	 40.40	0	449810..452386	+	858	197284295	clpB	PMI0395	-	chaperone ClpB (heat-shock protein F84.1)
381	 39.08	0	458689..459036	-	115	197284296	-	PMI0396	-	hypothetical protein
382	 36.64	0	459184..460545	-	453	197284297	pssA	PMI0397	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
383	 41.07	0	460731..463391	-	886	197284298	-	PMI0398	-	acyl-CoA synthetase/acetyltransferase
384	 40.94	0	463436..464119	-	227	197284299	-	PMI0399	-	hypothetical protein
385	 28.05	-2	464257..465315	+	352	197284300	-	PMI0400	-	hypothetical protein
386	 43.21	0	465490..466593	+	367	197284301	-	PMI0401	-	tRNA/rRNA methyltransferase
387	 40.35	0	466701..468239	-	512	197284302	emrB	PMI0402	-	MFS-family transporter
388	 40.82	0	468236..469411	-	391	197284303	emrA	PMI0403	-	multidrug resistance protein A
389	 44.24	0	469587..470237	-	216	197284304	-	PMI0404	-	GntR-family transcriptional regulator
390	 44.97	+1	470323..471525	+	400	197284305	-	PMI0405	-	MFS-family transporter
391	 36.15	0	471566..472168	+	200	197284306	-	PMI0406	-	hydrolase
392	 36.93	0	472371..472898	-	175	197284307	emrR	PMI0407	-	MarR-family transcriptional regulator
393	 41.03	0	473391..474611	-	406	197284308	-	PMI0408	-	MFS-family transporter
394	 38.68	0	474978..477371	+	797	197284309	-	PMI0409	-	TonB-dependent receptor
395	 40.26	0	477460..478455	-	331	197284310	proX	PMI0410	-	glycine betaine/L-proline ABC transporter, substrate-binding protein
396	 44.31	0	478575..479804	-	409	197284311	proW	PMI0411	-	glycine betaine/L-proline ABC transporter, permease protein
397	 40.58	0	479797..480996	-	399	197284312	proV	PMI0412	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
398	 33.95	-1	481605..482573	-	322	197284313	nrdF	PMI0413	-	ribonucleoside-diphosphate reductase beta chain
399	 38.65	0	482599..484725	-	708	197284314	nrdE	PMI0414	-	ribonucleoside-diphosphate reductase alpha chain
400	 41.48	0	484754..485158	-	134	197284315	nrdI	PMI0415	-	NrdI protein
401	 42.67	0	485170..485394	-	74	197284316	nrdH	PMI0416	-	glutaredoxin-like protein
402	 38.61	0	485676..486149	+	157	197284317	ogt	PMI0417	-	methylated-DNA--protein-cysteine methyltransferase
403	 39.52	0	486347..486556	+	69	197284318	cspE	PMI0418	-	cold shock protein
404	 45.60	+1	487014..487388	-	124	197284319	crcB	PMI0419	-	membrane protein (protein CrcB)
405	 43.27	0	487404..488369	-	321	197284320	lipA	PMI0420	-	lipoic acid synthetase
406	 41.24	0	488471..489115	-	214	197284321	lipB	PMI0421	-	lipoyltransferase
407	 39.33	0	489467..489733	-	88	197284322	-	PMI0422	-	hypothetical protein
408	 40.10	0	489929..491140	-	403	197284323	dacA	PMI0423	-	penicillin-binding protein
409	 43.59	0	491267..492280	-	337	197284324	rlpA	PMI0424	-	rare lipoprotein A precursor
410	 40.61	0	492291..493403	-	370	197284325	rodA	PMI0425	-	rod shape-determining protein
411	 42.67	0	493408..495303	-	631	197284326	pbpA	PMI0426	-	penicillin-binding protein
412	 46.07	+1	495341..495811	-	156	197284327	-	PMI0427	-	hypothetical protein
413	 41.51	0	495814..496131	-	105	197284328	-	PMI0428	-	hypothetical protein
414	 36.11	0	496531..497286	+	251	197284329	-	PMI0429	-	hypothetical protein
415	 41.22	0	497300..497971	-	223	197284330	nadD	PMI0430	-	nicotinate-nucleotide adenylyltransferase
416	 41.16	0	497964..498998	-	344	197284331	holA	PMI0431	-	DNA polymerase III delta subunit
417	 42.62	0	498995..499543	-	182	197284332	rlpB	PMI0432	-	rare lipoprotein B
418	 42.43	0	499556..502138	-	860	197284333	leuS	PMI0433	-	leucyl-tRNA synthetase
419	 38.71	0	502498..503223	-	241	197284334	gltL	PMI0434	-	glutamate/aspartate ABC transporter, ATP-binding protein
420	 37.78	0	503224..503898	-	224	197284335	gltK	PMI0435	-	glutamate/aspartate ABC transporter, permease protein
421	 41.57	0	503898..504638	-	246	197284336	gltJ	PMI0436	-	glutamate/aspartate ABC transporter, permease protein
422	 39.37	0	504757..505650	-	297	197284337	gltI	PMI0437	-	glutamate/aspartate ABC transporter, substrate-binding protein
423	 42.29	0	505995..506396	+	133	197284338	-	PMI0438	-	metal resistance protein
424	 42.02	0	506477..508513	+	678	197284339	-	PMI0439	-	metal resistance protein
425	 39.34	0	508513..509244	+	243	197284340	-	PMI0440	-	metal resistance protein
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.