IslandPathversion 1.0

IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.69 STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
163	 37.89	0	203036..204001	-	321	197284078	-	PMI0166	-	membrane-associated peptidase
164	 36.01	0	204061..204621	-	186	197284079	-	PMI0167	-	hypothetical protein
165	 39.61	0	204845..205657	-	270	197284080	-	PMI0168	-	anaerobic dimethyl sulfoxide reductase subunit
166	 40.58	0	205660..206211	-	183	197284081	-	PMI0169	-	anaerobic dimethyl sulfoxide reductase chain b (dmso reductase iron-sulfur subunit)
167	 40.14	0	206214..208550	-	778	197284082	-	PMI0170	-	anaerobic dimethyl sulfoxide reductase, molybdopterin-binding subunit
168	 37.68	0	208781..209470	+	229	197284083	-	PMI0171	-	regulatory protein
169	 41.31	0	209535..210800	-	421	197284084	-	PMI0172	-	Dyp-type peroxidase
170	 36.80	0	210790..211713	-	307	197284085	-	PMI0173	-	hypothetical protein
171	 37.63	0	211703..212539	-	278	197284086	-	PMI0174	-	hypothetical protein
172	 40.52	0	212542..212889	-	115	197284087	-	PMI0175	-	hypothetical protein
173	 41.94	0	212955..213512	-	185	197284088	-	PMI0176	-	hypothetical protein
174	 29.80	-2	214455..214907	+	150	197284089	-	PMI0178	-	membrane protein
175	 28.12	-2	214900..215091	-	63	197284090	-	PMI0179	-	hypothetical protein
176	 33.54	-1	215102..215590	-	162	197284091	-	PMI0180	-	hypothetical protein
177	 32.84	-1	215645..215845	-	66	197284092	-	PMI0181	-	hypothetical protein
178	 39.39	0	216179..216475	-	98	197284093	-	PMI0182	-	transcriptional regulator
179	 40.04	0	217066..218943	+	625	197284094	gsp	PMI0183	-	bifunctional glutathionylspermidine synthetase/amidase [includes: glutathionylspermidine synthase and glutathionylspermidine amidase
180	 36.19	0	219014..219958	-	314	197284095	dsdC	PMI0184	-	D-serine deaminase activator (LysR-family transcriptional regulator)
181	 39.84	0	220180..221517	+	445	197284096	dsdX	PMI0186	-	DsdX permease
182	 41.50	0	221524..222858	+	444	197284097	dsdA	PMI0187	-	D-serine dehydratase
183	 40.06	0	223039..224079	-	346	197284098	afuC	PMI0188	-	ferric cation import ABC transporter, ATP-binding protein
184	 40.45	0	224095..226173	-	692	197284099	afuB	PMI0189	-	ferric ABC transporter, permease protein
185	 41.96	0	226248..227279	-	343	197284100	afuA	PMI0190	-	ferric ABC transporter, iron-binding protein
186	 41.93	0	227282..228619	-	445	197284101	-	PMI0191	-	MFS-family transporter
187	 39.02	0	228702..230249	-	515	197284102	-	PMI0192	-	two-component sensor kinase
188	 40.60	0	230251..230883	-	210	197284103	-	PMI0193	-	two-component response regulator
189	 43.83	0	231084..231464	-	126	197284104	panD	PMI0194	-	aspartate 1-decarboxylase
190	 40.73	0	231493..232344	-	283	197284105	panC	PMI0195	-	pantoate--beta-alanine ligase
191	 43.31	0	232388..233179	-	263	197284106	panB	PMI0196	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
192	 42.97	0	233537..234034	-	165	197284107	folK	PMI0197	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase
193	 43.18	0	234027..235367	-	446	197284108	pcnB	PMI0198	-	poly(A) polymerase
194	 36.06	0	235698..236027	-	109	197284109	-	PMI0199	-	hypothetical protein
195	 45.61	+1	236089..236544	-	151	197284110	dksA	PMI0200	-	DnaK suppressor protein
196	 38.96	0	236741..237451	-	236	197284111	sfsA	PMI0202	-	sugar fermentation stimulation protein
197	 42.47	0	237537..239966	+	809	197284112	hrpB	PMI0203	-	ATP-dependent RNA helicase
198	 42.41	0	240095..242407	+	770	197284113	mrcB	PMI0204	-	penicillin-binding protein
199	 44.44	0	242510..243796	-	428	197284114	hemL	PMI0205	-	glutamate-1-semialdehyde 2,1-aminomutase
200	 41.74	0	244074..244418	+	114	197284115	-	PMI0206	-	iron-sulphur protein
201	 41.81	0	245183..245701	+	172	197284116	hcp	PMI0207	-	conserved hypothetical protein (hemolysin co-regulated protein)
202	 37.52	0	245814..247940	+	708	197284117	-	PMI0208	-	VgrG-like protein
203	 26.34	-2	247940..248740	+	266	197284118	-	PMI0209	-	hypothetical protein
204	 29.48	-2	248741..250660	+	639	197284119	-	PMI0210	-	lipase
205	 31.19	-1	250641..251435	+	264	197284120	-	PMI0211	-	lipoprotein
206	 30.44	-1	251619..252413	+	264	197284121	-	PMI0212	-	lipoprotein
207	 40.07	0	252452..253282	-	276	197284122	-	PMI0213	-	periplasmic binding protein
208	 41.24	0	253382..254089	-	235	197284123	mtnN	PMI0214	-	MTA/SAH nucleosidase (5'-methylthioadenosine nucleosidase) (s-adenosylhomocysteine nucleosidase)
209	 35.59	0	254209..255717	+	502	197284124	dgt	PMI0215	-	deoxyguanosinetriphosphate triphosphohydrolase
210	 41.86	0	256105..257430	+	441	197284125	rumA	PMI0216	-	23S rRNA (uracil-5-)-methyltransferase
211	 41.37	0	257486..259726	+	746	197284126	relA	PMI0217	-	GTP pyrophosphokinase
212	 39.35	0	259837..260634	+	265	197284127	mazG	PMI0218	-	nucleotide pyrophosphohydrolase
213	 30.09	-1	260773..260988	+	71	197284128	-	PMI0219	-	hypothetical protein
214	 42.31	0	261146..262783	+	545	197284129	pyrG	PMI0220	-	CTP synthase
215	 41.86	0	262848..264149	+	433	197284130	eno	PMI0221	-	enolase
216	 40.42	0	264470..265852	+	460	197284131	-	PMI0222	-	Sodium:sulfate symporter-family protein
217	 34.80	0	266036..267673	+	545	197284132	-	PMI0223	-	alpha-keto acid decarboxylase
218	 39.85	0	267762..269096	-	444	197284133	mltD	PMI0224	-	membrane-bound lytic murein transglycosylase D precursor
219	 35.19	0	269170..269925	-	251	197284134	gloB	PMI0225	-	hydroxyacylglutathione hydrolase
220	 39.62	0	270041..270676	+	211	197284135	-	PMI0226	-	hypothetical protein
221	 42.50	0	270701..271180	-	159	197284136	rnhA	PMI0227	-	ribonuclease HI
222	 41.24	0	271246..272004	+	252	197284137	dnaQ	PMI0228	-	DNA polymerase III, epsilon subunit
223	 43.03	0	272591..273673	+	360	197284138	-	PMI0229	-	ABC transporter, permease protein (FecCD transport family)
224	 41.26	0	273673..274467	+	264	197284139	-	PMI0230	-	ABC transporter, ATP-binding subunit
225	 37.16	0	274538..275374	-	278	197284140	-	PMI0231	-	citrate lyase beta chain
226	 41.99	0	275588..277471	+	627	197284141	-	PMI0232	-	siderophore biosynthesis protein
227	 42.52	0	277482..279593	+	703	197284142	-	PMI0233	-	TonB-dependent siderophore receptor
228	 41.38	0	279605..281008	+	467	197284143	-	PMI0234	-	decarboxylase
229	 44.15	0	281020..282036	+	338	197284144	-	PMI0235	-	pyridoxal-phosphate dependent enzyme
230	 43.35	0	282033..283190	+	385	197284145	-	PMI0236	-	octopine/opine/tauropine dehydrogenase
231	 44.39	0	283192..284403	+	403	197284146	-	PMI0237	-	MFS-family transporter
232	 42.64	0	284414..285541	+	375	197284147	-	PMI0238	-	substrate-binding protein
233	 39.37	0	285544..285990	+	148	197284148	-	PMI0239	-	hypothetical protein
234	 42.61	0	286327..288321	+	664	197284149	tktA	PMI0240	-	transketolase
235	 40.49	0	288580..289599	+	339	197284150	epd	PMI0241	-	D-erythrose 4-phosphate dehydrogenase
236	 41.84	0	289702..290865	+	387	197284151	pgk	PMI0242	-	phosphoglycerate kinase
237	 39.17	0	290930..292009	+	359	197284152	fbaA	PMI0243	-	fructose-bisphosphate aldolase class II
238	 33.33	-1	292101..292313	-	70	197284153	-	PMI0244	-	hypothetical protein
239	 39.01	0	292575..294053	-	492	197284154	-	PMI0245	-	MFS-family transporter
240	 41.04	0	294677..295195	-	172	197284155	hpaC	PMI0246	-	4-hydroxyphenylacetate 3-monooxygenase, reductase component
241	 37.56	0	295282..295494	+	70	197284156	-	PMI0247	-	hypothetical protein
242	 37.44	0	295772..296209	+	145	197284157	hpcR	PMI0248	-	homoprotocatechuate degradative operon repressor (MarR family transcriptional regulator)
243	 41.52	0	296280..298283	-	667	197284158	betU	PMI0249	-	secondary glycine betaine transporter
244	 37.24	0	298652..299317	-	221	197284159	-	PMI0250	-	lipoprotein
245	 32.89	-1	299567..300241	+	224	197284160	-	PMI0251	-	hypothetical protein
246	 39.98	0	300324..301241	-	305	197284161	rnz	PMI0252	-	ribonuclease Z
247	 17.09	-2	301428..301544	+	38	197284162	-	PMI0253	-	hypothetical protein
248	 39.39	0	302482..303009	+	175	197284163	-	PMI0254	-	fimbrial protein
249	 39.73	0	303249..305876	+	875	197284164	-	PMI0255	-	fimbrial outer membrane usher protein
250	 38.38	0	306695..307249	+	184	197284165	-	PMI0257	-	fimbrial protein
251	 37.38	0	307263..307781	+	172	197284166	-	PMI0258	-	minor fimbrial subunit
252	 37.80	0	307792..308328	+	178	197284167	-	PMI0259	-	fimbrial protein
253	 39.58	0	308347..309195	+	282	197284168	-	PMI0260	-	fimbrial adhesin
254	 39.25	0	309216..309536	+	106	197284169	-	PMI0261	-	fimbrial operon regulator
255	 36.86	0	310101..310667	-	188	197284170	mrpI	PMI0262	-	fimbriae recombinase
256	 38.64	0	311346..311873	+	175	197284171	mrpA	PMI0263	-	major mannose-resistant/Proteus-like fimbrial protein
257	 45.45	+1	311959..312519	+	186	197284172	mrpB	PMI0264	-	fimbrial subunit
258	 41.13	0	312542..315157	+	871	197284173	mrpC	PMI0265	-	fimbrial outer membrane usher protein
259	 40.05	0	315213..315971	+	252	197284174	mrpD	PMI0266	-	fimbrial chaperone protein
260	 41.21	0	315985..316530	+	181	197284175	mrpE	PMI0267	-	fimbrial subunit
261	 38.07	0	316543..317028	+	161	197284176	mrpF	PMI0268	-	fimbrial subunit
262	 39.53	0	317039..317587	+	182	197284177	mrpG	PMI0269	-	fimbrial subunit
39.69	MEAN

4.91	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.