IslandPath Analysis: Proteus mirabilis HI4320



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.69   STD DEV: 4.91
Proteus mirabilis HI4320, complete genome - 1..4063606
3607 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1023	 27.54	-2	1127237..1127512	+	91	197284938	-	PMI1060	-	fimbrial operon regulator
1024	 35.65	0	1127562..1128080	+	172	197284939	-	PMI1061	-	fimbrial protein
1025	 31.57	-1	1128290..1130665	+	791	197284940	-	PMI1062	-	Fimbrial usher protein
1026	 34.23	-1	1130658..1131326	+	222	197284941	-	PMI1063	-	fimbrial chaperone
1027	 36.40	0	1131337..1132347	+	336	197284942	-	PMI1064	-	fimbrial protein
1028	 37.18	0	1132348..1132893	+	181	197284943	-	PMI1065	-	fimbrial subunit
1029	 36.61	0	1132904..1133452	+	182	197284944	-	PMI1066	-	fimbrial protein
1030	 27.87	-2	1133454..1134002	+	182	197284945	-	PMI1067	-	fimbrial protein
1031	 23.88	-2	1134187..1134588	-	133	197284946	-	PMI1068	-	hypothetical protein
1032	 31.84	-1	1136286..1136822	-	178	197284947	-	PMI1070	-	hypothetical protein
1033	 31.91	-1	1136839..1136979	-	46	197284948	-	PMI1071	-	hypothetical protein
1034	 33.54	-1	1137942..1138424	-	160	197284949	hocA	PMI1073	-	phosphotriesterase
1035	 37.96	0	1142794..1143225	-	143	197284950	-	PMI1075	-	hypothetical protein
1036	 41.48	0	1143741..1144832	-	363	197284951	engD	PMI1080	-	GTP-dependent nucleic acid-binding protein
1037	 38.46	0	1145024..1145608	-	194	197284952	pth	PMI1081	-	peptidyl-tRNA hydrolase
1038	 39.78	0	1145953..1146231	+	92	197284953	-	PMI1082	-	hypothetical protein
1039	 44.20	0	1146469..1147416	-	315	197284954	prsA	PMI1083	-	ribose-phosphate pyrophosphokinase
1040	 45.09	+1	1147505..1148380	-	291	197284955	ispE	PMI1084	-	4-diphosphocytidyl-2-c-methyl-d-erythritol kinase
1041	 41.00	0	1148377..1149015	-	212	197284956	lolB	PMI1085	-	outer-membrane lipoprotein
1042	 41.73	0	1149255..1150517	+	420	197284957	hemA	PMI1086	-	glutamyl-tRNA reductase
1043	 44.78	+1	1150546..1151628	+	360	197284958	prfA	PMI1087	-	peptide chain release factor 1
1044	 41.70	0	1151628..1152476	+	282	197284959	hemK	PMI1088	-	protein methyltransferase (protein-glutamine N-methyltransferase)
1045	 37.88	0	1152457..1153269	+	270	197284960	sirB1	PMI1089	-	hypothetical protein
1046	 42.57	0	1153327..1154181	+	284	197284961	kdsA	PMI1090	-	2-dehydro-3-deoxyphosphooctulonate aldolase
1047	 39.89	0	1154189..1155118	+	309	197284962	-	PMI1091	-	hypothetical protein
1048	 37.99	0	1155196..1155474	+	92	197284963	-	PMI1092	-	hypothetical protein
1049	 41.50	0	1155644..1157344	-	566	197284964	-	PMI1093	-	sulfate transporter
1050	 38.96	0	1158306..1159247	+	313	197284965	-	PMI1094	-	2-hydroxyacid dehydrogenase
1051	 27.46	-2	1159439..1162300	+	953	197284966	-	PMI1095	-	hypothetical protein
1052	 38.92	0	1162545..1163153	+	202	197284967	-	PMI1096	-	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein
1053	 40.32	0	1163377..1163934	+	185	197284968	-	PMI1097	-	chaperone
1054	 36.58	0	1164172..1164726	-	184	197284969	-	PMI1098	-	lipoprotein
1055	 41.90	0	1164768..1165970	-	400	197284970	mdtH	PMI1099	-	multidrug resistance protein (MFS-family transporter)
1056	 39.35	0	1166165..1166746	+	193	197284971	rimJ	PMI1100	-	ribosomal-protein-alanine acetyltransferase
1057	 39.58	0	1166917..1168452	+	511	197284972	mviN	PMI1101	-	hypothetical protein
1058	 40.29	0	1169492..1169764	+	90	197284973	-	PMI1102	-	lipoprotein
1059	 41.36	0	1169911..1171641	-	576	197284974	argS	PMI1103	-	arginyl-tRNA synthetase
1060	 36.40	0	1171814..1172368	+	184	197284975	-	PMI1104	-	hypothetical protein
1061	 42.36	0	1172535..1173287	+	250	197284976	cutC	PMI1105	-	copper homeostasis protein
1062	 38.87	0	1173343..1174932	-	529	197284977	-	PMI1106	-	lipoprotein
1063	 36.40	0	1175287..1176849	-	520	197284978	-	PMI1107	-	ABC transporter, ATP-binding protein
1064	 40.72	0	1177186..1178160	-	324	197284979	-	PMI1108	-	hypothetical protein
1065	 38.53	0	1178163..1178912	-	249	197284980	-	PMI1109	-	hypothetical protein
1066	 38.60	0	1179097..1179495	-	132	197284981	-	PMI1110	-	hypothetical protein
1067	 43.19	0	1179763..1181547	+	594	197284982	aspS	PMI1111	-	aspartyl-tRNA synthetase
1068	 42.24	0	1181548..1181985	+	145	197284983	ntpA	PMI1112	-	DATP pyrophosphohydrolase
1069	 44.05	0	1182014..1182769	+	251	197284984	-	PMI1113	-	hypothetical protein
1070	 44.25	0	1182894..1183415	+	173	197284985	ruvC	PMI1114	-	Holliday junction nuclease
1071	 42.15	0	1183518..1184141	+	207	197284986	ruvA	PMI1115	-	Holliday junction ATP-dependent DNA helicase
1072	 43.92	0	1184154..1185164	+	336	197284987	ruvB	PMI1116	-	Holliday junction ATP-dependent DNA helicase
1073	 48.17	+1	1185979..1186497	+	172	197284988	hcp	PMI1117	-	hypothetical protein
1074	 48.07	+1	1186581..1188683	+	700	197284989	-	PMI1118	-	Rhs-family protein
1075	 42.90	0	1188696..1189751	+	351	197284990	-	PMI1119	-	hypothetical protein
1076	 43.08	0	1189744..1194855	+	1703	197284991	-	PMI1120	-	Rhs-family protein
1077	 25.16	-2	1194871..1195482	+	203	197284992	-	PMI1121	-	hypothetical protein
1078	 26.67	-2	1195540..1195719	+	59	197284993	-	PMI1122	-	hypothetical protein
1079	 29.51	-2	1195694..1195876	+	60	197284994	-	PMI1123	-	hypothetical protein
1080	 25.23	-2	1195873..1196193	+	106	197284995	-	PMI1124	-	hypothetical protein
1081	 43.74	0	1196255..1197397	+	380	197284996	-	PMI1125	-	Rhs-family protein
1082	 29.09	-2	1197400..1197729	+	109	197284997	-	PMI1126	-	hypothetical protein
1083	 44.44	0	1197795..1197947	+	50	197284998	-	PMI1127	-	hypothetical protein
1084	 26.04	-2	1199654..1199941	+	95	197284999	-	PMI1129	-	hypothetical protein
1085	 36.43	0	1199975..1200103	+	42	197285000	-	PMI1130	-	hypothetical protein
1086	 29.63	-2	1201193..1201732	+	179	197285001	-	PMI1132	-	hypothetical protein
1087	 35.53	0	1202583..1202900	+	105	197285002	-	PMI1135	-	hypothetical protein
1088	 32.48	-1	1202903..1203370	+	155	197285003	-	PMI1136	-	hypothetical protein
1089	 23.58	-2	1204565..1204933	+	122	197285004	-	PMI1139	-	hypothetical protein
1090	 30.45	-1	1205946..1206257	+	103	197285005	-	PMI1141	-	hypothetical protein
1091	 31.27	-1	1208268..1208558	+	96	197285006	-	PMI1144	-	ribonuclease inhibitor
1092	 25.47	-2	1208895..1209212	+	105	197285007	-	PMI1145	-	hypothetical protein
1093	 40.11	0	1209300..1209476	-	58	197285008	-	PMI1146	-	hypothetical protein
1094	 31.18	-1	1209647..1209832	+	61	197285009	-	PMI1147	-	hypothetical protein
1095	 36.16	0	1209999..1210352	+	117	197285010	-	PMI1148	-	hypothetical protein
1096	 42.88	0	1210670..1211455	-	261	197285011	znuB	PMI1150	-	high-affinity zinc uptake system membrane protein
1097	 39.12	0	1211448..1212173	-	241	197285012	znuC	PMI1151	-	high-affinity zinc uptake system ATP-binding protein
1098	 37.57	0	1212248..1213192	+	314	197285013	znuA	PMI1152	-	high-affinity zinc uptake system substrate-binding protein
1099	 42.81	0	1213205..1214533	+	442	197285014	-	PMI1153	-	peptidase
1100	 43.28	0	1214640..1215614	+	324	197285015	msbB	PMI1154	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
1101	 43.10	0	1215704..1217146	-	480	197285016	pykA	PMI1155	-	pyruvate kinase II
1102	 39.98	0	1217377..1218219	-	280	197285017	hexR	PMI1156	-	hex regulon repressor (RpiR-family transcriptional regulator)
1103	 40.51	0	1218574..1220049	+	491	197285018	zwf	PMI1157	-	glucose-6-phosphate 1-dehydrogenase
1104	 36.96	0	1220632..1221072	+	146	197285019	mdtJ	PMI1158	-	multidrug resistance protein
1105	 39.34	0	1221074..1221406	+	110	197285020	mdtI	PMI1159	-	multidrug resistance protein
1106	 28.79	-2	1221564..1221695	+	43	197285021	-	PMI1160	-	hypothetical protein
1107	 33.45	-1	1221697..1222560	+	287	197285022	-	PMI1161	-	hypothetical protein
1108	 40.00	0	1222590..1222934	-	114	197285023	-	PMI1162	-	endoribonuclease
1109	 42.26	0	1223020..1224957	+	645	197285024	-	PMI1163	-	ATP-dependent helicase
1110	 45.73	+1	1225051..1225752	+	233	197285025	rpf	PMI1164	-	resuscitation-promoting factor (glycoprotease)
1111	 42.42	0	1225843..1226436	+	197	197285026	-	PMI1165	-	lipoprotein
1112	 41.44	0	1226739..1228427	+	562	197285027	fadD	PMI1166	-	long-chain-fatty-acid-CoA ligase
1113	 41.11	0	1228527..1229645	+	372	197285028	rnd	PMI1167	-	ribonuclease D
1114	 38.89	0	1229919..1230188	-	89	197285029	minE	PMI1168	-	cell division topological specificity factor
1115	 40.34	0	1230192..1231004	-	270	197285030	minD	PMI1169	-	septum site-determining protein
1116	 39.89	0	1231027..1231728	-	233	197285031	minC	PMI1170	-	septum site-determining protein
1117	 34.69	-1	1231856..1232149	+	97	197285032	-	PMI1171	-	hypothetical protein
1118	 42.11	0	1232174..1233301	+	375	197285033	-	PMI1172	-	lipoprotein
1119	 42.47	0	1233355..1234011	+	218	197285034	-	PMI1173	-	fumarylacetoacetate hydrolase
1120	 39.86	0	1234045..1234488	+	147	197285035	-	PMI1174	-	hypothetical protein
1121	 35.93	0	1234533..1235303	-	256	197285036	-	PMI1175	-	hypothetical protein
1122	 34.56	-1	1235369..1236019	-	216	197285037	-	PMI1176	-	ABC transporter, ATP-binding protein
39.69	MEAN

4.91	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.