IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
722	 36.82	0	658375..658575	-	66	33240173	-	Pro0723	-	hypothetical protein
723	 37.38	0	658863..659183	-	106	33240174	-	Pro0724	-	hypothetical protein
724	 40.58	0	659846..660052	+	68	33240175	-	Pro0725	-	hypothetical protein
725	 36.67	0	660478..660657	-	59	33240176	-	Pro0726	-	hypothetical protein
726	 38.01	0	660844..662040	-	398	33240177	wcaA	Pro0727	-	glycosyltransferase
727	 33.33	0	662087..663865	+	592	33240178	amyA	Pro0728	-	glycosidase
728	 34.33	0	663855..664658	+	267	33240179	-	Pro0729	-	mannosyl-3-phosphoglycerate phosphatase
729	 33.24	0	664663..665682	+	339	33240180	-	Pro0730	-	phosphoribulokinase/uridine kinase family protein
730	 35.09	0	665755..665982	+	75	33240181	-	Pro0731	-	hypothetical protein
731	 33.07	0	666151..666528	+	125	33240182	-	Pro0732	-	hypothetical protein
732	 36.30	0	666626..666760	+	44	33240183	-	Pro0733	-	hypothetical protein
733	 36.59	0	666828..667103	-	91	33240184	-	Pro0734	-	hypothetical protein
734	 37.36	0	667190..668059	+	289	33240185	uppP	Pro0735	-	undecaprenyl pyrophosphate phosphatase
735	 24.24	-2	668062..668226	+	54	33240186	-	Pro0736	-	hypothetical protein
736	 43.01	+1	668400..669743	-	447	33240187	-	Pro0737	-	porin-like protein
737	 33.33	0	670322..670666	-	114	33240188	-	Pro0738	-	hypothetical protein
738	 26.67	-2	671067..671231	-	54	33240189	-	Pro0739	-	hypothetical protein
739	 35.29	0	671233..671946	-	237	33240190	msrA	Pro0740	-	peptide methionine sulfoxide reductase
740	 36.90	0	671971..672222	-	83	33240191	-	Pro0741	-	hypothetical protein
741	 36.87	0	672319..674070	-	583	33240192	mdlB	Pro0742	-	multidrug ABC transporter
742	 36.27	0	674156..674461	+	101	33240193	-	Pro0743	-	hypothetical protein
743	 38.50	0	674580..675605	+	341	33240194	trpD	Pro0744	-	anthranilate phosphoribosyltransferase
744	 38.31	0	675646..676791	+	381	33240195	carA	Pro0745	-	carbamoyl phosphate synthase small subunit
745	 37.12	0	676799..677221	+	140	33240196	spoIIAA	Pro0746	-	anti-anti-sigma regulatory factor
746	 39.86	0	677218..677631	+	137	33240197	-	Pro0747	-	hypothetical protein
747	 37.23	0	677636..678892	+	418	33240198	spoU	Pro0748	-	rRNA methylase
748	 39.83	0	679040..679270	+	76	33240199	-	Pro0749	-	hypothetical protein
749	 39.56	0	679321..680781	+	486	33240200	gatA	Pro0750	-	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
750	 35.61	0	681024..684530	+	1168	33240201	dnaE	Pro0751	-	DNA polymerase III subunit alpha
751	 33.86	0	684536..684913	-	125	33240202	-	Pro0752	-	hypothetical protein
752	 36.67	0	684948..685217	-	89	33240203	rpsO	Pro0753	-	30S ribosomal protein S15
753	 33.93	0	685286..685954	-	222	33240204	ruvA	Pro0754	-	Holliday junction resolvasome DNA-binding subunit
754	 42.31	+1	685980..686369	-	129	33240205	-	Pro0755	-	hypothetical protein
755	 36.82	0	686395..687282	-	295	33240206	rhaT	Pro0756	-	DMT family permease
756	 40.22	0	687410..689470	+	686	33240207	dnaG	Pro0757	-	DNA primase
757	 30.15	-1	689520..689990	-	156	33240208	-	Pro0758	-	hypothetical protein
758	 38.21	0	690057..691328	-	423	33240209	dinP	Pro0759	-	nucleotidyltransferase/DNA polymerase
759	 42.36	+1	691340..691771	-	143	33240210	umuD	Pro0760	-	family S24 peptidase
760	 35.84	0	691842..692279	-	145	33240211	-	Pro0761	-	hypothetical protein
761	 36.72	0	692310..692693	-	127	33240212	-	Pro0762	-	hypothetical protein
762	 38.21	0	692833..693672	+	279	33240213	ksgA	Pro0763	-	dimethyladenosine transferase
763	 37.50	0	693669..694628	+	319	33240214	ispE	Pro0764	-	4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase
764	 38.38	0	694625..694981	+	118	33240215	-	Pro0765	-	hypothetical protein
765	 36.79	0	695189..696172	+	327	33240216	acoB	Pro0766	-	pyruvate dehydrogenase E1 beta subunit
766	 35.76	0	696176..697660	+	494	33240217	secD	Pro0767	-	preprotein translocase subunit SecD
767	 33.54	0	697670..698635	+	321	33240218	secF	Pro0768	-	preprotein translocase subunit SecF
768	 33.33	0	698656..698880	+	74	33240219	-	Pro0769	-	hypothetical protein
769	 32.82	-1	698877..699854	-	325	33240220	perM	Pro0770	-	hypothetical protein
770	 38.42	0	699968..700321	-	117	33240221	psb28	Pro0771	-	photosystem II reaction center protein Psb28
771	 35.82	0	700385..701428	-	347	33240222	-	Pro0772	-	tRNA 2-selenouridine synthase
772	 39.67	0	701466..702191	+	241	33240223	-	Pro0773	-	hypothetical protein
773	 41.22	+1	702305..702748	+	147	33240224	rsbW	Pro0774	-	anti-sigma regulatory factor (Ser/Thr protein kinase)
774	 32.91	-1	702698..702934	-	78	33240225	-	Pro0775	-	hypothetical protein
775	 32.79	-1	702956..703687	-	243	33240226	-	Pro0776	-	alpha/beta fold family hydrolase
776	 41.21	+1	703846..704556	+	236	33240227	dnaQ	Pro0777	-	putative DNA polymerase III, epsilon subunit
777	 37.08	0	704687..704926	+	79	33240228	-	Pro0778	-	hypothetical protein
778	 37.36	0	705071..706336	+	421	33240229	hisS	Pro0779	-	histidyl-tRNA synthetase
779	 24.81	-2	706371..706628	+	85	33240230	-	Pro0780	-	hypothetical protein
780	 34.22	0	706628..706966	+	112	33240231	-	Pro0781	-	hypothetical protein
781	 40.09	0	707091..707312	+	73	33240232	-	Pro0782	-	hypothetical protein
782	 42.80	+1	707932..708987	+	351	33240233	pcbA	Pro0783	-	chlorophyll a/b binding light harvesting protein PcbA
783	 35.36	0	709152..710534	+	460	33240234	gltS	Pro0784	-	putative sodium:solute symporter, ESS family
784	 31.78	-1	710600..710857	+	85	33240235	-	Pro0785	-	hypothetical protein
785	 31.20	-1	710887..711588	-	233	33240236	gst	Pro0786	-	glutathione S-transferase omega class
786	 33.87	0	711684..712241	+	185	33240237	-	Pro0787	-	hypothetical protein
787	 29.12	-1	712345..712605	+	86	33240238	-	Pro0788	-	hypothetical protein
788	 34.74	0	712632..713342	-	236	33240239	fabG	Pro0789	-	short-chain dehydrogenase/reductase family protein
789	 35.43	0	713347..714633	-	428	33240240	lcyE	Pro0790	-	lycopene epsilon cyclase
790	 31.64	-1	714903..715907	+	334	33240241	por	Pro0791	-	putative light-dependent protochlorophyllide oxido-reductase
791	 32.45	-1	715924..716940	-	338	33240242	mscS	Pro0792	-	small-conductance mechanosensitive channel
792	 30.45	-1	717090..717644	-	184	33240243	pncA	Pro0793	-	isochorismatase family hydrolase
793	 38.66	0	717794..718300	+	168	33240244	fur	Pro0794	-	Fe2+/Zn2+ uptake regulation protein
794	 34.19	0	718321..719250	-	309	33240245	-	Pro0795	-	NifB/MoaA family Fe-S oxidoreductase
795	 30.49	-1	719298..720527	-	409	33240246	-	Pro0796	-	putative glucosylglycerolphosphate phosphatase
796	 32.29	-1	720713..722245	+	510	33240247	-	Pro0797	-	hypothetical protein
797	 27.00	-2	722345..723496	+	383	33240248	-	Pro0798	-	homoserine/choline kinase family protein
798	 37.30	0	723575..724279	+	234	33240249	-	Pro0799	-	hypothetical protein
799	 38.00	0	724313..725641	+	442	33240250	MET17	Pro0800	-	putative O-Acetyl homoserine sulfhydrylase
800	 37.25	0	725657..726550	+	297	33240251	metA	Pro0801	-	putative homoserine O-succinyltransferase
801	 32.09	-1	726553..727116	+	187	33240252	alkB	Pro0802	-	alkylated DNA repair protein
802	 44.68	+1	727144..727425	-	93	33240253	-	Pro0803	-	hypothetical protein
803	 36.76	0	727573..729150	-	525	33240254	SUL1	Pro0804	-	putative sulfate transporter
804	 33.80	0	729183..730469	-	428	33240255	glcD	Pro0805	-	FAD linked oxidase, N-terminal
805	 36.19	0	730556..731605	+	349	33240256	-	Pro0806	-	hypothetical protein
806	 35.27	0	731998..732255	+	85	33240257	-	Pro0807	-	hypothetical protein
807	 34.98	0	732239..733879	-	546	33240258	cetA	Pro0808	-	GMC family oxidoreductase
808	 38.94	0	733949..734251	-	100	33240259	-	Pro0809	-	hypothetical protein
809	 32.08	-1	734416..734892	+	158	33240260	-	Pro0810	-	pentapeptide repeat-containing protein
810	 22.68	-2	734897..735262	-	121	33240261	-	Pro0811	-	hypothetical protein
811	 36.08	0	735265..735774	-	169	33240262	-	Pro0812	-	hypothetical protein
812	 39.49	0	736371..736565	+	64	33240263	-	Pro0813	-	hypothetical protein
813	 35.21	0	736618..736884	-	88	33240264	-	Pro0814	-	hypothetical protein
814	 40.69	0	737110..739503	-	797	33240265	-	Pro0815	-	ribonucleotide reductase (class II)
815	 36.08	0	739564..740256	+	230	33240266	smtA	Pro0816	-	SAM-dependent methyltransferase
816	 31.02	-1	740329..741582	-	417	33240267	pqqL	Pro0817	-	Zn-dependent peptidase
817	 36.62	0	741583..742860	-	425	33240268	pqqL	Pro0818	-	Zn-dependent peptidase
818	 36.02	0	742912..743655	+	247	33240269	pcyA	Pro0819	-	phycocyanobilin:ferredoxin oxidoreductase
819	 35.32	0	743688..744542	+	284	33240270	devB	Pro0820	-	DevB-like secretion protein
820	 37.94	0	744542..745714	+	390	33240271	devC	Pro0821	-	ABC transporter transmembrane protein
821	 37.69	0	745729..746439	+	236	33240272	devA	Pro0822	-	ABC transporter ATP-binding protein
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.