IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.01   STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
583	 35.60	0	550708..551193	+	161	33240034	-	Pro0583	-	6-pyruvoyl-tetrahydropterin synthase
584	 40.68	0	551225..552790	-	521	33240035	-	Pro0584	-	putative carotenoid isomerase
585	 38.31	0	552787..554193	-	468	33240036	gid	Pro0585	-	tRNA (uracil-5-)-methyltransferase Gid
586	 39.02	0	554236..554358	-	40	33240037	pbsY	Pro0586	-	photosystem II protein Y
587	 35.09	0	554663..555004	+	113	33240038	-	Pro0587	-	hypothetical protein
588	 38.30	0	555342..555683	+	113	33240039	-	Pro0588	-	hypothetical protein
589	 36.96	0	555785..556087	+	100	33240040	-	Pro0589	-	hypothetical protein
590	 36.67	0	556189..556368	-	59	33240041	rpsU	Pro0590	-	30S ribosomal protein S21
591	 39.61	0	556786..557040	-	84	33240042	-	Pro0591	-	hypothetical protein
592	 33.81	0	557128..557337	+	69	33240043	-	Pro0592	-	hypothetical protein
593	 36.18	0	557401..557751	+	116	33240044	-	Pro0593	-	hypothetical protein
594	 31.91	-1	557760..558110	-	116	33240045	-	Pro0594	-	hypothetical protein
595	 36.87	0	558478..558675	-	65	33240046	-	Pro0595	-	hypothetical protein
596	 33.45	0	558880..559701	-	273	33240047	pstB	Pro0596	-	phosphate ABC transporter ATP-binding protein
597	 36.94	0	559722..560636	-	304	33240048	pstA	Pro0597	-	phosphate ABC transporter phosphate-binding protein
598	 37.12	0	560650..561600	-	316	33240049	pstC	Pro0598	-	phosphate ABC transporter permease
599	 37.21	0	561803..561931	-	42	33240050	-	Pro0599	-	hypothetical protein
600	 35.63	0	562473..562646	+	57	33240051	-	Pro0600	-	hypothetical protein
601	 38.49	0	562693..563157	+	154	33240052	-	Pro0601	-	hypothetical protein
602	 37.22	0	563477..563785	+	102	33240053	-	Pro0602	-	hypothetical protein
603	 30.33	-1	564321..564986	-	221	33240054	-	Pro0604	-	hypothetical protein
604	 39.88	0	565292..565459	+	55	33240055	-	Pro0605	-	hypothetical protein
605	 35.47	0	565465..566025	+	186	33240056	-	Pro0606	-	hypothetical protein
606	 37.13	0	566030..569587	+	1185	33240057	-	Pro0607	-	superfamily I DNA/RNA helicase
607	 31.37	-1	569926..570129	-	67	33240058	-	Pro0608	-	hypothetical protein
608	 38.12	0	570126..570731	-	201	33240059	-	Pro0609	-	hypothetical protein
609	 32.18	-1	571124..571642	+	172	33240060	-	Pro0610	-	hypothetical protein
610	 37.16	0	571662..571844	-	60	33240061	-	Pro0611	-	hypothetical protein
611	 36.01	0	571900..573318	-	472	33240062	-	Pro0612	-	retron-type reverse transcriptase
612	 37.59	0	573320..574963	-	547	33240063	-	Pro0613	-	hypothetical protein
613	 30.72	-1	574963..577755	-	930	33240064	-	Pro0614	-	hypothetical protein
614	 37.23	0	578131..579900	-	589	33240065	-	Pro0615	-	AbrB family trancriptional regulator
615	 34.92	0	580239..583571	-	1110	33240066	-	Pro0616	-	AbrB family trancriptional regulator
616	 34.90	0	584182..584373	+	63	33240067	-	Pro0617	-	hypothetical protein
617	 42.86	+1	584412..584621	+	69	33240068	-	Pro0618	-	hypothetical protein
618	 37.56	0	584688..584900	+	70	33240069	-	Pro0619	-	hypothetical protein
619	 40.51	0	584981..585217	+	78	33240070	-	Pro0620	-	hypothetical protein
620	 43.45	+1	585381..585884	-	167	33240071	-	Pro0621	-	hypothetical protein
621	 37.04	0	586080..586268	-	62	33240072	-	Pro0622	-	hypothetical protein
622	 43.26	+1	586261..586542	-	93	33240073	-	Pro0623	-	hypothetical protein
623	 37.65	0	586717..586878	+	53	33240074	-	Pro0624	-	hypothetical protein
624	 38.13	0	586958..587416	+	152	33240075	-	Pro0625	-	hypothetical protein
625	 40.45	0	587418..587993	+	191	33240076	-	Pro0626	-	hypothetical protein
626	 37.27	0	587984..588313	+	109	33240077	-	Pro0627	-	hypothetical protein
627	 35.53	0	588602..589783	-	393	33240078	-	Pro0628	-	hypothetical protein
628	 36.29	0	589776..591839	-	687	33240079	-	Pro0629	-	DNA helicase, restriction/modification system component, ortholog of BS_yeeB
629	 36.21	0	591847..594594	-	915	33240080	-	Pro0630	-	Type II restriction enzyme, methylase subunit
630	 41.29	+1	594914..595705	+	263	33240081	-	Pro0631	-	hypothetical protein
631	 37.47	0	595742..596104	+	120	33240082	-	Pro0632	-	hypothetical protein
632	 39.20	0	596166..596642	+	158	33240083	-	Pro0633	-	Zn-ribbon protein
633	 45.63	+2	596643..597008	-	121	33240084	-	Pro0634	-	hypothetical protein
634	 40.90	0	597305..597727	+	140	33240085	-	Pro0635	-	hypothetical protein
635	 31.88	-1	597918..598535	-	205	33240086	-	Pro0636	-	hypothetical protein
636	 40.00	0	599096..599215	+	39	33240087	-	Pro0637	-	hypothetical protein
637	 36.02	0	599278..599463	+	61	33240088	-	Pro0638	-	hypothetical protein
638	 44.17	+1	599677..599916	-	79	33240089	-	Pro0639	-	hypothetical protein
639	 42.08	+1	600113..600295	+	60	33240090	-	Pro0640	-	hypothetical protein
640	 35.24	0	600609..601028	+	139	33240091	-	Pro0641	-	hypothetical protein
641	 37.90	0	601045..601263	-	72	33240092	-	Pro0642	-	hypothetical protein
642	 39.33	0	601603..602019	+	138	33240093	-	Pro0643	-	hypothetical protein
643	 39.23	0	602429..602767	-	112	33240094	iscA	Pro0644	-	hypothetical protein
644	 32.26	-1	602932..603117	-	61	33240095	-	Pro0645	-	hypothetical protein
645	 39.78	0	603118..603303	-	61	33240096	-	Pro0646	-	hypothetical protein
646	 37.88	0	603394..603591	-	65	33240097	-	Pro0647	-	hypothetical protein
647	 31.92	-1	603905..604117	-	70	33240098	-	Pro0648	-	hypothetical protein
648	 41.49	+1	604253..604534	+	93	33240099	-	Pro0649	-	hypothetical protein
649	 39.05	0	604563..604772	+	69	33240100	-	Pro0650	-	hypothetical protein
650	 36.04	0	604975..605196	-	73	33240101	-	Pro0651	-	hypothetical protein
651	 35.29	0	605761..605964	+	67	33240102	-	Pro0652	-	hypothetical protein
652	 29.69	-1	605965..606156	+	63	33240103	-	Pro0653	-	hypothetical protein
653	 35.59	0	606274..606450	-	58	33240104	-	Pro0654	-	hypothetical protein
654	 40.14	0	606580..607020	+	146	33240105	-	Pro0655	-	hypothetical protein
655	 23.53	-2	607118..607219	+	33	33240106	-	Pro0656	-	hypothetical protein
656	 36.78	0	607247..607885	+	212	33240107	-	Pro0657	-	hypothetical protein
657	 42.12	+1	607985..608257	-	90	33240108	-	Pro0658	-	hypothetical protein
658	 36.86	0	608429..608797	-	122	33240109	-	Pro0659	-	hypothetical protein
659	 33.91	0	609021..609194	+	57	33240110	-	Pro0660	-	hypothetical protein
660	 32.64	-1	609841..610272	+	143	33240111	-	Pro0661	-	hypothetical protein
661	 39.15	0	610371..611435	-	354	33240112	-	Pro0662	-	NADPH-dependent reductase
662	 33.87	0	612367..612552	+	61	33240113	-	Pro0663	-	hypothetical protein
663	 40.25	0	612889..613047	-	52	33240114	-	Pro0664	-	hypothetical protein
664	 33.89	0	613294..613473	-	59	33240115	-	Pro0665	-	hypothetical protein
665	 34.60	0	614078..614473	+	131	33240116	-	Pro0666	-	hypothetical protein
666	 35.53	0	614554..614826	+	90	33240117	-	Pro0667	-	hypothetical protein
667	 36.41	0	615231..615425	+	64	33240118	-	Pro0668	-	hypothetical protein
668	 34.14	0	615718..616089	-	123	33240119	-	Pro0669	-	hypothetical protein
669	 36.36	0	616298..616528	+	76	33240120	-	Pro0670	-	hypothetical protein
670	 35.98	0	616559..616747	-	62	33240121	-	Pro0671	-	hypothetical protein
671	 34.90	0	617076..617714	+	212	33240122	-	Pro0672	-	hypothetical protein
672	 38.27	0	617834..618583	-	249	33240123	-	Pro0673	-	ABC-type polar amino acid transport system ATPase component
673	 35.98	0	618590..619609	-	339	33240124	-	Pro0674	-	ABC-type amino acid transport system permease component
674	 33.67	0	619627..620526	-	299	33240125	-	Pro0675	-	ABC-type amino acid transport system permease component
675	 38.27	0	620558..621610	-	350	33240126	-	Pro0676	-	amino acid ABC transporter periplasmic protein
676	 34.53	0	623197..623781	+	194	33240127	-	Pro0677	-	hypothetical protein
677	 39.52	0	623897..624106	+	69	33240128	-	Pro0678	-	hypothetical protein
678	 33.81	0	624259..626154	-	631	33240129	-	Pro0679	-	nucleotide-diphosphate-sugar epimerase, membrane associated
679	 29.37	-1	626255..627238	-	327	33240130	rfe	Pro0680	-	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase
680	 33.00	-1	627245..628147	-	300	33240131	-	Pro0681	-	nucleoside-diphosphate-sugar epimerase
681	 30.20	-1	628144..629292	-	382	33240132	rfaG	Pro0682	-	glycosyltransferase
682	 42.09	+1	629584..630120	-	178	33240133	-	Pro0683	-	hypothetical protein
37.01	MEAN

3.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.