IslandPathversion 1.0

IslandPath Analysis: Prochlorococcus marinus subsp. marinus str. CCMP1375



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.01 STD DEV: 3.99
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome - 1..1751080
1883 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1014	 38.07	0	932409..933632	-	407	33240465	ispG	Pro1015	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1015	 34.81	0	933636..934244	-	202	33240466	-	Pro1016	-	Uracil-DNA glycosylase
1016	 34.83	0	934269..934670	-	133	33240467	-	Pro1017	-	lactoylglutathione lyase family protein
1017	 34.60	0	934763..935944	+	393	33240468	-	Pro1018	-	aspartate aminotransferase
1018	 35.55	0	935962..936864	+	300	33240469	phnD	Pro1019	-	ABC-type phosphate/phosphonate transport system periplasmic component
1019	 33.88	0	936861..937598	+	245	33240470	phnE	Pro1020	-	ABC-type phosphate/phosphonate transport system ATPase component
1020	 33.08	0	937604..939175	+	523	33240471	phnC	Pro1021	-	ABC-type phosphate/phosphonate transport system permease component
1021	 39.53	0	939175..939819	+	214	33240472	tesA	Pro1022	-	arylesterase
1022	 36.07	0	939863..940666	-	267	33240473	-	Pro1023	-	hypothetical protein
1023	 34.77	0	940663..941427	-	254	33240474	-	Pro1024	-	hypothetical protein
1024	 37.88	0	941420..941881	-	153	33240475	-	Pro1025	-	hypothetical protein
1025	 36.19	0	941991..942620	+	209	33240476	cbiO	Pro1026	-	ABC transporter ATP-binding protein
1026	 36.75	0	942628..943533	+	301	33240477	-	Pro1027	-	disulfide bond chaperone
1027	 36.77	0	943544..944242	-	232	33240478	-	Pro1028	-	chaperone
1028	 38.25	0	944297..945964	-	555	33240479	prfC	Pro1029	-	peptide chain release factor 3
1029	 38.53	0	945965..946195	-	76	33240480	-	Pro1030	-	hypothetical protein
1030	 35.38	0	946328..946912	+	194	33240481	cioY	Pro1031	-	hypothetical protein
1031	 27.39	-2	946909..947379	+	156	33240482	lspA	Pro1032	-	lipoprotein signal peptidase
1032	 36.47	0	947426..948988	+	520	33240483	-	Pro1033	-	membrane associated GTPase
1033	 41.07	+1	948912..949079	-	55	33240484	-	Pro1034	-	hypothetical protein
1034	 38.08	0	949087..950454	-	455	33240485	gadB	Pro1035	-	pyridoxal-dependent decarboxylase family protein
1035	 37.78	0	950547..951041	+	164	33240486	cumB	Pro1036	-	cytosine/adenosine deaminase
1036	 39.59	0	951036..952202	-	388	33240487	-	Pro1037	-	serine:pyruvate/alanine:glyoxylate aminotransferase
1037	 39.73	0	952441..953862	+	473	33240488	glnA	Pro1038	-	glutamine synthetase, glutamate--ammonia ligase
1038	 23.23	-2	953966..954262	+	98	33240489	-	Pro1039	-	hypothetical protein
1039	 34.55	0	954354..955421	+	355	33240490	-	Pro1040	-	SAM (and some other nucleotide) binding motif:Generic methyl-transferase
1040	 39.71	0	955620..957596	-	658	33240491	acs	Pro1041	-	Acyl-coenzyme A synthetase
1041	 37.55	0	957870..958841	-	323	33240492	crtE	Pro1042	-	polyprenyl synthetase; solanesyl diphosphate synthase (sds)
1042	 35.70	0	958864..959667	-	267	33240493	murI	Pro1043	-	glutamate racemase
1043	 33.70	0	959664..960755	-	363	33240494	amiC	Pro1044	-	cell wall hydrolase/autolysin
1044	 41.12	+1	960760..961581	-	273	33240495	-	Pro1045	-	putative nitrilase
1045	 38.52	0	961612..962343	-	243	33240496	-	Pro1046	-	2-phosphosulfolactate phosphatase
1046	 39.14	0	962406..963971	+	521	33240497	ubiD	Pro1047	-	3-polyprenyl-4-hydroxybenzoate decarboxylase elated enzyme
1047	 39.93	0	964037..965371	+	444	33240498	aroA	Pro1048	-	3-phosphoshikimate 1-carboxyvinyltransferase
1048	 34.81	0	965352..966299	+	315	33240499	-	Pro1049	-	SAM-dependent methyltransferase
1049	 36.57	0	966333..967691	+	452	33240500	glmU	Pro1050	-	N-acetylglucosamine-1-phosphate uridyltransferase
1050	 36.62	0	967688..969088	-	466	33240501	murF	Pro1051	-	UDP-N-acetylmuramyl pentapeptide synthase
1051	 40.44	0	969133..970638	-	501	33240502	glgA	Pro1052	-	glycogen synthase
1052	 40.73	0	970687..971565	-	292	33240503	menB	Pro1053	-	naphthoate synthase
1053	 35.30	0	971612..973336	-	574	33240504	menD	Pro1054	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase
1054	 36.04	0	973448..974038	+	196	33240505	lepB	Pro1055	-	leader peptidase I
1055	 37.89	0	974080..974430	+	116	33240506	-	Pro1056	-	hypothetical protein
1056	 35.76	0	974420..975616	-	398	33240507	-	Pro1057	-	hypothetical protein
1057	 34.36	0	975619..976494	-	291	33240508	znuB	Pro1058	-	ABC-type Mn2+/Zn2+ transport system permease components
1058	 38.42	0	976491..977276	-	261	33240509	znuC	Pro1059	-	ABC transporter ATP-binding protein
1059	 37.46	0	977289..978161	-	290	33240510	znuA	Pro1060	-	ABC-type Mn2+/Zn2+ transport system periplasmic component
1060	 38.68	0	978296..979642	-	448	33240511	-	Pro1061	-	hypothetical protein
1061	 39.47	0	979891..980460	+	189	33240512	-	Pro1062	-	hypothetical protein
1062	 31.67	-1	980466..981485	+	339	33240513	trpS	Pro1063	-	tryptophanyl-tRNA synthetase
1063	 33.64	0	981485..983416	+	643	33240514	thrS	Pro1064	-	threonyl-tRNA synthetase
1064	 35.05	0	983438..984484	+	348	33240515	glk	Pro1065	-	glucokinase
1065	 41.14	+1	984498..985445	+	315	33240516	thrB	Pro1066	-	homoserine kinase
1066	 35.81	0	985503..987074	+	523	33240517	ndhD	Pro1067	-	NAD(P)H-quinone oxidoreductase subunit 4
1067	 36.15	0	987084..989210	+	708	33240518	dcp	Pro1068	-	peptidase family M3
1068	 35.74	0	989172..989795	-	207	33240519	lipA	Pro1069	-	alpha/beta fold family lipase
1069	 34.64	0	989799..990182	-	127	33240520	folB	Pro1070	-	dihydroneopterin aldolase
1070	 38.52	0	990188..991498	-	436	33240521	proA	Pro1071	-	gamma-glutamyl phosphate reductase
1071	 31.43	-1	991574..991993	-	139	33240522	nagC	Pro1072	-	sugar kinase
1072	 35.17	0	991996..995925	-	1309	33240523	-	Pro1073	-	hypothetical protein
1073	 39.23	0	996048..996641	+	197	33240524	-	Pro1074	-	hypothetical protein
1074	 31.49	-1	996619..997053	+	144	33240525	-	Pro1075	-	hypothetical protein
1075	 27.34	-2	997118..997384	+	88	33240526	-	Pro1076	-	hypothetical protein
1076	 39.24	0	997399..999006	+	535	33240527	-	Pro1077	-	alpha/beta fold family hydrolase
1077	 38.40	0	999042..1001309	+	755	33240528	glgB	Pro1078	-	glycogen branching enzyme
1078	 38.73	0	1001451..1002506	+	351	33240529	hemE	Pro1079	-	uroporphyrinogen decarboxylase
1079	 35.09	0	1002503..1003525	+	340	33240530	wcaG	Pro1080	-	NAD dependent epimerase/dehydratase
1080	 44.17	+1	1003534..1003893	+	119	33240531	petE	Pro1081	-	plastocyanin
1081	 32.64	-1	1004268..1006862	+	864	33240532	clpA	Pro1082	-	ATPase with chaperone activity ATP-binding subunit
1082	 45.93	+2	1006867..1007628	-	253	33240533	ompR	Pro1083	-	two-component response regulator
1083	 34.07	0	1007703..1007975	+	90	33240534	-	Pro1084	-	hypothetical protein
1084	 35.80	0	1007980..1008303	-	107	33240535	-	Pro1085	-	glutaredoxin-like protein
1085	 39.39	0	1008319..1008549	-	76	33240536	colA	Pro1086	-	BolA-like protein
1086	 35.40	0	1008601..1009131	-	176	33240537	-	Pro1087	-	hypothetical protein
1087	 39.47	0	1009168..1009851	-	227	33240538	plsC	Pro1088	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1088	 38.33	0	1010005..1010745	+	246	33240539	pdxJ	Pro1089	-	pyridoxal phosphate biosynthetic protein PdxJ
1089	 35.69	0	1010770..1014081	+	1103	33240540	recC	Pro1090	-	exonuclease V gamma subunit
1090	 30.73	-1	1014078..1014614	+	178	33240541	STE14	Pro1091	-	S-isoprenylcysteine O-methyltransferase related enzyme
1091	 36.62	0	1014658..1018428	+	1256	33240542	recB	Pro1092	-	ATP-dependent exoDNAse beta subunit
1092	 34.57	0	1018431..1020125	+	564	33240543	recD	Pro1093	-	ATP-dependent exoDNAse alpha subunit
1093	 37.91	0	1020284..1022095	+	603	33240544	srmB	Pro1094	-	superfamily II DNA/RNA helicase
1094	 34.68	0	1022105..1022401	+	98	33240545	-	Pro1095	-	hypothetical protein
1095	 35.35	0	1022433..1024214	+	593	33240546	mdlB	Pro1096	-	ABC-type multidrug transport system ATPase and permease components
1096	 36.38	0	1024233..1024790	-	185	33240547	psbP	Pro1097	-	photosystem II oxygen evolving complex protein PsbP
1097	 37.84	0	1024995..1025504	+	169	33240548	recR	Pro1098	-	recombinational DNA repair protein
1098	 38.40	0	1025520..1026446	+	308	33240549	lipA	Pro1099	-	lipoyl synthase
1099	 38.86	0	1026443..1026967	-	174	33240550	-	Pro1100	-	hypothetical protein
1100	 37.58	0	1026964..1027929	-	321	33240551	-	Pro1101	-	sulfurtransferase
1101	 40.74	0	1027922..1028920	-	332	33240552	cioB	Pro1102	-	biotin synthase
1102	 39.33	0	1028932..1029732	-	266	33240553	uppS	Pro1103	-	undecaprenyl pyrophosphate synthase
1103	 38.38	0	1029745..1030635	-	296	33240554	-	Pro1104	-	hypothetical protein
1104	 36.99	0	1030664..1032031	-	455	33240555	lysA	Pro1105	-	diaminopimelate decarboxylase
1105	 32.68	-1	1032104..1032565	+	153	33240556	rimI	Pro1106	-	acetyltransferase
1106	 37.07	0	1032758..1035328	+	856	33240557	clpA	Pro1107	-	Clp protease ATP-binding subunit
1107	 34.30	0	1035363..1036496	+	377	33240558	gldA	Pro1108	-	glycerol dehydrogenase family protein
1108	 36.05	0	1036509..1037390	+	293	33240559	-	Pro1109	-	alpha/beta fold family hydrolase
1109	 26.45	-2	1037394..1038032	+	212	33240560	-	Pro1110	-	hypothetical protein
1110	 33.45	0	1038029..1038919	-	296	33240561	cdsA	Pro1111	-	CDP-diglyceride synthetase
1111	 38.32	0	1038919..1040241	-	440	33240562	ldcC	Pro1112	-	lysine decarboxylase
1112	 32.12	-1	1040409..1042055	+	548	33240563	aarF	Pro1113	-	protein kinase
1113	 31.23	-1	1042125..1042838	+	237	33240564	rsuA	Pro1114	-	16S rRNA pseudouridylate synthase
37.01	MEAN

3.99	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.