IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3190	 62.96	0	3420940..3421236	+	98	87201216	-	Saro_3204	-	hypothetical protein
3191	 68.50	0	3421366..3421638	+	90	87201217	-	Saro_3205	-	hypothetical protein
3192	 64.39	0	3421708..3424344	-	878	87201218	-	Saro_3206	-	methionine synthase (B12-dependent)
3193	 62.95	0	3424461..3425537	-	358	87201219	-	Saro_3207	-	methionine synthase (B12-dependent)
3194	 67.09	0	3425534..3426475	-	313	87201220	-	Saro_3208	-	5,10-methylenetetrahydrofolate reductase
3195	 66.18	0	3426482..3427507	-	341	87201221	-	Saro_3209	-	ArsR family transcriptional regulator
3196	 67.46	0	3427655..3428032	-	125	87201222	-	Saro_3210	-	hypothetical protein
3197	 63.18	0	3428245..3428502	-	85	87201223	-	Saro_3211	-	hypothetical protein
3198	 63.21	0	3428543..3429265	-	240	87201224	-	Saro_3212	-	3-oxoacyl-[acyl-carrier-protein] reductase
3199	 65.72	0	3429441..3430181	-	246	87201225	-	Saro_3213	-	hypothetical protein
3200	 66.24	0	3430597..3431061	+	154	87201226	-	Saro_3214	-	hypothetical protein
3201	 64.82	0	3431111..3433657	+	848	87201227	leuS	Saro_3215	-	leucyl-tRNA synthetase
3202	 66.90	0	3433719..3434150	+	143	87201228	-	Saro_3216	-	hypothetical protein
3203	 65.79	0	3434161..3435183	+	340	87201229	-	Saro_3217	-	DNA polymerase III, delta subunit
3204	 64.32	0	3435376..3436779	+	467	87201230	-	Saro_3218	-	sugar transferase
3205	 67.63	0	3436809..3437744	-	311	87201231	-	Saro_3219	-	peptidase M48, Ste24p
3206	 62.64	0	3437998..3439263	+	421	87201232	-	Saro_3220	-	GDP-mannose 6-dehydrogenase
3207	 61.16	-1	3439260..3440513	+	417	87201233	-	Saro_3221	-	glycosyl transferase, group 1
3208	 65.02	0	3440545..3441090	-	181	87201234	-	Saro_3222	-	hypothetical protein
3209	 61.06	-1	3441276..3441989	+	237	87201235	-	Saro_3223	-	polysaccharide export protein
3210	 64.85	0	3442033..3444234	+	733	87201236	-	Saro_3224	-	protein-tyrosine kinase
3211	 67.07	0	3444277..3445527	+	416	87201237	-	Saro_3225	-	glycosyl transferase, group 1
3212	 65.09	0	3445570..3446523	-	317	87201238	-	Saro_3226	-	glycosyl transferase family protein
3213	 55.37	-2	3446520..3447626	-	368	87201239	-	Saro_3227	-	acyltransferase 3
3214	 59.63	-1	3447652..3448959	-	435	87201240	-	Saro_3228	-	hypothetical protein
3215	 66.67	0	3449113..3449382	+	89	87201241	-	Saro_3229	-	hypothetical protein
3216	 66.52	0	3449382..3451442	+	686	87201242	-	Saro_3230	-	hypothetical protein
3217	 64.39	0	3451482..3452753	-	423	87201243	-	Saro_3231	-	hypothetical protein
3218	 65.95	0	3452750..3453721	-	323	87201244	-	Saro_3232	-	hypothetical protein
3219	 64.14	0	3453763..3455184	-	473	87201245	-	Saro_3233	-	polysaccharide biosynthesis protein
3220	 64.46	0	3455384..3456517	+	377	87201246	-	Saro_3234	-	polysaccharide biosynthesis protein
3221	 63.08	0	3456553..3457611	-	352	87201247	-	Saro_3235	-	dTDP-glucose 4,6-dehydratase
3222	 66.32	0	3457604..3458461	-	285	87201248	-	Saro_3236	-	dTDP-4-dehydrorhamnose reductase
3223	 63.74	0	3458458..3459003	-	181	87201249	-	Saro_3237	-	dTDP-4-dehydrorhamnose 3,5-epimerase
3224	 61.48	-1	3459000..3459905	-	301	87201250	-	Saro_3238	-	glucose-1-phosphate thymidylyltransferase
3225	 67.39	0	3460109..3461353	-	414	87201251	-	Saro_3239	-	hypothetical protein
3226	 67.49	0	3461337..3463040	-	567	87201252	-	Saro_3240	-	ABC transporter related
3227	 65.69	0	3463030..3464979	-	649	87201253	-	Saro_3241	-	asparagine synthase
3228	 62.77	0	3464976..3465488	-	170	87201254	-	Saro_3242	-	hypothetical protein
3229	 55.56	-2	3465481..3465750	-	89	87201255	-	Saro_3243	-	hypothetical protein
3230	 60.16	-1	3466034..3466894	-	286	87201256	-	Saro_3244	-	HPr kinase
3231	 56.10	-2	3466899..3467144	-	81	87201257	-	Saro_3245	-	hypothetical protein
3232	 63.18	0	3467290..3467547	+	85	87201258	-	Saro_3246	-	hypothetical protein
3233	 67.55	0	3467726..3469084	+	452	87201259	-	Saro_3247	-	O-antigen polymerase
3234	 70.46	+1	3469081..3469791	+	236	87201260	-	Saro_3248	-	hypothetical protein
3235	 66.67	0	3469832..3470386	-	184	87201261	-	Saro_3249	-	OstA-like protein
3236	 66.67	0	3470383..3471027	-	214	87201262	-	Saro_3250	-	hypothetical protein
3237	 65.05	0	3471052..3471669	-	205	87201263	-	Saro_3251	-	3'-5' exonuclease
3238	 64.92	0	3471830..3472744	+	304	87201264	-	Saro_3252	-	sulfate adenylyltransferase subunit 2
3239	 63.72	0	3472744..3474678	+	644	87201265	-	Saro_3253	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
3240	 64.18	0	3474721..3475002	+	93	87201266	-	Saro_3254	-	hypothetical protein
3241	 65.59	0	3475038..3476342	-	434	87201267	-	Saro_3255	-	UDP-glucose 6-dehydrogenase
3242	 72.25	+2	3476471..3477151	+	226	87201268	-	Saro_3256	-	uracil-DNA glycosylase
3243	 72.66	+2	3477222..3477638	-	138	87201269	-	Saro_3257	-	hypothetical protein
3244	 63.57	0	3477635..3478150	-	171	87201270	-	Saro_3258	-	signal peptidase II
3245	 63.95	0	3478150..3481056	-	968	87201271	ileS	Saro_3259	-	isoleucyl-tRNA synthetase
3246	 67.86	0	3481250..3482173	-	307	87201272	-	Saro_3260	-	riboflavin kinase / FMN adenylyltransferase
3247	 66.41	0	3482170..3483354	-	394	87201273	-	Saro_3261	-	peptidase M19, renal dipeptidase
3248	 68.63	+1	3483378..3483887	-	169	87201274	-	Saro_3262	-	dihydrofolate reductase
3249	 68.93	+1	3483884..3484942	-	352	87201275	-	Saro_3263	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3250	 63.99	0	3484957..3485442	-	161	87201276	-	Saro_3264	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
3251	 65.36	0	3485472..3486158	-	228	87201277	-	Saro_3265	-	phosphoglycerate mutase
3252	 68.73	+1	3486624..3486914	-	96	87201278	-	Saro_3266	-	hypothetical protein
3253	 67.35	0	3486981..3487997	+	338	87201279	-	Saro_3267	-	L-threonine aldolase
3254	 66.88	0	3487994..3488917	+	307	87201280	-	Saro_3268	-	hypothetical protein
3255	 70.32	+1	3488827..3489675	-	282	87201281	-	Saro_3269	-	NAD-dependent epimerase/dehydratase
3256	 66.44	0	3489731..3492346	+	871	87201282	-	Saro_3270	-	peptidase M1, alanyl aminopeptidase
3257	 71.81	+2	3492343..3493101	+	252	87201283	-	Saro_3271	-	hypothetical protein
3258	 66.83	0	3493098..3493721	-	207	87201284	-	Saro_3272	-	HAD family hydrolase
3259	 61.90	-1	3493829..3493954	-	41	87201285	-	Saro_3273	-	50S ribosomal protein L36P
3260	 65.53	0	3494018..3494899	+	293	87201286	-	Saro_3274	-	hypothetical protein
3261	 63.97	0	3494893..3495894	-	333	87201287	-	Saro_3275	-	UDP-galactose 4-epimerase
3262	 66.05	0	3495967..3496776	-	269	87201288	-	Saro_3276	-	hypothetical protein
3263	 70.88	+1	3496835..3497428	+	197	87201289	-	Saro_3277	-	hypothetical protein
3264	 66.40	0	3497425..3498555	+	376	87201290	-	Saro_3278	-	peptidase M14, carboxypeptidase A
3265	 66.96	0	3498762..3499103	-	113	87201291	-	Saro_3279	-	arsenate reductase
3266	 65.87	0	3499265..3501388	+	707	87201292	-	Saro_3280	-	TonB-dependent siderophore receptor
3267	 67.84	0	3501473..3501982	-	169	87201293	-	Saro_3281	-	(2Fe-2S)-binding protein
3268	 61.96	-1	3502015..3502779	-	254	87201294	-	Saro_3282	-	hypothetical protein
3269	 68.10	0	3502808..3503434	+	208	87201295	-	Saro_3283	-	hypothetical protein
3270	 70.98	+1	3503438..3504133	-	231	87201296	-	Saro_3284	-	HPP
3271	 68.69	+1	3504255..3504797	-	180	87201297	rpsI	Saro_3285	-	30S ribosomal protein S9
3272	 63.54	0	3504800..3505279	-	159	87201298	rplM	Saro_3286	-	50S ribosomal protein L13
3273	 68.20	0	3505418..3505744	-	108	87201299	-	Saro_3287	-	periplasmic divalent cation tolerance protein
3274	 67.52	0	3505741..3506793	-	350	87201300	-	Saro_3288	-	cytochrome oxidase assembly
3275	 68.55	+1	3506969..3507340	+	123	87201301	-	Saro_3289	-	hypothetical protein
3276	 66.47	0	3507383..3508378	+	331	87201302	-	Saro_3290	-	bifunctional sulfur carrier protein/thiazole synthase protein
3277	 65.17	0	3508428..3510692	-	754	87201303	-	Saro_3291	-	malic enzyme
3278	 66.55	0	3510824..3512479	-	551	87201304	-	Saro_3292	-	hypothetical protein
3279	 69.38	+1	3512607..3515183	+	858	87201305	-	Saro_3293	-	DNA mismatch repair protein
3280	 70.41	+1	3515176..3515790	+	204	87201306	-	Saro_3294	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
3281	 66.43	0	3515840..3517096	-	418	87201307	-	Saro_3295	-	Na+ dependent nucleoside transporter-like
3282	 63.36	0	3517186..3517851	+	221	87201308	-	Saro_3296	-	hypothetical protein
3283	 67.54	0	3517962..3518873	+	303	87201309	-	Saro_3297	-	acetylglutamate kinase
3284	 71.60	+1	3519032..3519457	+	141	87201310	-	Saro_3298	-	hypothetical protein
3285	 59.67	-1	3519646..3519945	+	99	87201311	-	Saro_3299	-	protein of unknown function YGGT
3286	 67.34	0	3519973..3520866	+	297	87201312	-	Saro_3300	-	methenyltetrahydrofolate cyclohydrolase
3287	 64.94	0	3521161..3521565	+	134	87201313	-	Saro_3301	-	thioesterase superfamily protein
3288	 62.22	0	3521569..3521748	-	59	87201314	-	Saro_3302	-	hypothetical protein
3289	 67.48	0	3521752..3522489	-	245	87201315	-	Saro_3303	-	3-demethylubiquinone-9 3-methyltransferase
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.