IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1492	 62.52	0	1543701..1545002	+	433	87199518	-	Saro_1500	-	Cl- channel, voltage gated
1493	 59.40	-1	1545008..1545943	-	311	87199519	-	Saro_1501	-	LysR family transcriptional regulator
1494	 63.72	0	1546358..1546900	+	180	87199520	-	Saro_1502	-	hypothetical protein
1495	 64.14	0	1547027..1547737	+	236	87199521	-	Saro_1503	-	HAD family hydrolase
1496	 65.15	0	1547734..1549518	+	594	87199522	-	Saro_1504	-	glycoside hydrolase 15-related
1497	 62.01	-1	1549515..1550909	+	464	87199523	-	Saro_1505	-	Alpha,alpha-trehalose-phosphate synthase (UDP-forming)
1498	 60.67	-1	1551018..1551734	+	238	87199524	-	Saro_1506	-	transposase
1499	 59.00	-1	1552191..1552529	+	112	87199525	-	Saro_1507	-	hypothetical protein
1500	 58.45	-2	1552530..1552967	-	145	87199526	-	Saro_1508	-	hypothetical protein
1501	 57.95	-2	1553048..1553437	-	129	87199527	-	Saro_1509	-	hypothetical protein
1502	 60.59	-1	1553514..1554188	-	224	87199528	-	Saro_1510	-	two component transcriptional regulator
1503	 64.93	0	1554185..1555621	-	478	87199529	-	Saro_1511	-	periplasmic sensor signal transduction histidine kinase
1504	 61.89	-1	1555630..1557534	-	634	87199530	-	Saro_1512	-	K+ potassium transporter
1505	 59.10	-1	1557945..1558790	-	281	87199531	-	Saro_1513	-	hypothetical protein
1506	 57.14	-2	1559005..1559424	-	139	87199532	-	Saro_1514	-	hypothetical protein
1507	 62.20	0	1559822..1560604	+	260	87199533	-	Saro_1515	-	Flp pilus assembly CpaB
1508	 60.55	-1	1560594..1562147	+	517	87199534	-	Saro_1516	-	type II and III secretion system protein
1509	 61.46	-1	1562137..1562424	+	95	87199535	-	Saro_1517	-	hypothetical protein
1510	 59.95	-1	1562441..1564003	+	520	87199536	-	Saro_1518	-	hypothetical protein
1511	 61.42	-1	1564000..1564533	+	177	87199537	-	Saro_1519	-	TadE-like
1512	 56.67	-2	1564530..1565159	+	209	87199538	-	Saro_1520	-	TadE-like
1513	 59.40	-1	1565208..1566404	+	398	87199539	-	Saro_1521	-	Flp pilus assembly protein ATPase CpaE-like
1514	 59.33	-1	1566401..1567804	+	467	87199540	-	Saro_1522	-	type II secretion system protein E
1515	 59.37	-1	1567809..1568795	+	328	87199541	-	Saro_1523	-	type II secretion system protein
1516	 58.93	-1	1568798..1569766	+	322	87199542	-	Saro_1524	-	type II secretion system protein
1517	 59.70	-1	1569771..1570430	+	219	87199543	-	Saro_1525	-	TPR repeat-containing protein
1518	 58.23	-2	1570451..1570924	+	157	87199544	-	Saro_1526	-	peptidase A24A, prepilin type IV
1519	 47.80	-2	1570927..1571700	-	257	87199545	-	Saro_1527	-	regulatory proteins, IclR
1520	 62.31	0	1571775..1572164	-	129	87199546	-	Saro_1528	-	IS4 family transposase
1521	 62.93	0	1572185..1572532	-	115	87199547	-	Saro_1529	-	IS5 family transposase
1522	 58.16	-2	1573114..1574736	-	540	87199548	-	Saro_1530	-	flavin-containing monooxygenase FMO
1523	 63.66	0	1574831..1576426	-	531	87199549	-	Saro_1531	-	acyl-CoA synthetase
1524	 59.35	-1	1576437..1577201	-	254	87199550	-	Saro_1532	-	enoyl-CoA hydratase
1525	 58.90	-1	1577488..1579650	+	720	87199551	-	Saro_1533	-	TonB-dependent receptor
1526	 61.47	-1	1579840..1580724	-	294	87199552	-	Saro_1534	-	alpha/beta hydrolase
1527	 61.11	-1	1580914..1582263	+	449	87199553	-	Saro_1535	-	major facilitator transporter
1528	 66.67	0	1582448..1583209	+	253	87199554	-	Saro_1536	-	hypothetical protein
1529	 64.76	0	1583247..1584665	+	472	87199555	-	Saro_1537	-	hypothetical protein
1530	 63.45	0	1584662..1587898	+	1078	87199556	-	Saro_1538	-	DNA polymerase III, alpha subunit
1531	 64.86	0	1587982..1589310	-	442	87199557	-	Saro_1539	-	FAD dependent oxidoreductase
1532	 63.94	0	1589321..1590565	-	414	87199558	-	Saro_1540	-	major facilitator transporter
1533	 62.33	0	1590650..1591225	+	191	87199559	-	Saro_1541	-	TetR family transcriptional regulator
1534	 62.86	0	1591258..1593597	-	779	87199560	-	Saro_1542	-	TonB-dependent receptor
1535	 64.03	0	1593855..1595447	+	530	87199561	-	Saro_1543	-	glucose-methanol-choline oxidoreductase
1536	 66.30	0	1598538..1599911	+	457	87199562	-	Saro_1545	-	major facilitator transporter
1537	 62.78	0	1599944..1600894	+	316	87199563	-	Saro_1546	-	taurine dioxygenase
1538	 61.84	-1	1601033..1601923	-	296	87199564	-	Saro_1547	-	RpiR family transcriptional regulator
1539	 60.98	-1	1602156..1604336	+	726	87199565	-	Saro_1548	-	TonB-dependent receptor
1540	 63.62	0	1604434..1605384	+	316	87199566	-	Saro_1549	-	phosphonate-binding periplasmic protein
1541	 65.15	0	1605381..1606103	+	240	87199567	-	Saro_1550	-	ABC transporter related
1542	 65.62	0	1606100..1607053	+	317	87199568	-	Saro_1551	-	phosphonate ABC transporter permease
1543	 64.15	0	1607077..1609185	+	702	87199569	-	Saro_1552	-	twin-arginine translocation pathway signal
1544	 62.95	0	1609227..1610573	-	448	87199570	-	Saro_1553	-	putative GAF sensor protein
1545	 64.83	0	1610570..1611058	-	162	87199571	-	Saro_1554	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
1546	 61.90	-1	1611187..1612068	+	293	87199572	-	Saro_1555	-	N-acetyltransferase
1547	 64.02	0	1612093..1612620	+	175	87199573	-	Saro_1556	-	hypothetical protein
1548	 60.50	-1	1612743..1613537	+	264	87199574	-	Saro_1557	-	transcriptional regulator, putative
1549	 63.26	0	1613598..1615301	-	567	87199575	-	Saro_1558	-	flavin-containing monooxygenase FMO
1550	 63.11	0	1615327..1617519	-	730	87199576	-	Saro_1559	-	TonB-dependent receptor
1551	 65.25	0	1617712..1618485	-	257	87199577	-	Saro_1560	-	short-chain dehydrogenase/reductase SDR
1552	 67.05	0	1618665..1620215	+	516	87199578	-	Saro_1561	-	short chain dehydrogenase
1553	 63.66	0	1620330..1621094	+	254	87199579	-	Saro_1562	-	enoyl-CoA hydratase
1554	 65.85	0	1621111..1622706	+	531	87199580	-	Saro_1563	-	acyl-CoA synthetase
1555	 70.03	+1	1622710..1623423	+	237	87199581	-	Saro_1564	-	short-chain dehydrogenase/reductase SDR
1556	 69.75	+1	1623417..1623935	+	172	87199582	-	Saro_1565	-	short chain dehydrogenase/reductase family oxidoreductase
1557	 62.11	0	1623987..1624754	+	255	87199583	-	Saro_1566	-	IclR family transcriptional regulator
1558	 64.07	0	1624862..1625746	+	294	87199584	-	Saro_1567	-	senescence marker protein-30 (SMP-30)
1559	 64.81	0	1625751..1626938	+	395	87199585	-	Saro_1568	-	acyl-CoA dehydrogenase-like
1560	 65.77	0	1626947..1628056	+	369	87199586	-	Saro_1569	-	acyl-CoA dehydrogenase-like
1561	 65.90	0	1628053..1628577	+	174	87199587	-	Saro_1570	-	hypothetical protein
1562	 66.15	0	1628596..1629372	+	258	87199588	-	Saro_1571	-	hypothetical protein
1563	 67.86	0	1629369..1630460	-	363	87199589	-	Saro_1572	-	NADH:flavin oxidoreductase/NADH oxidase
1564	 64.29	0	1630555..1630848	-	97	87199590	-	Saro_1573	-	tellurite resistance-like domain-containing protein
1565	 60.94	-1	1630845..1631228	-	127	87199591	-	Saro_1574	-	SEC-independent protein translocase protein TatC
1566	 64.08	0	1631230..1631577	-	115	87199592	-	Saro_1575	-	hypothetical protein
1567	 63.62	0	1631614..1632303	-	229	87199593	-	Saro_1576	-	alternative oxidase
1568	 66.41	0	1632386..1633933	+	515	87199594	-	Saro_1577	-	multi-sensor signal transduction histidine kinase
1569	 65.22	0	1633923..1634546	+	207	87199595	-	Saro_1578	-	two component LuxR family transcriptional regulator
1570	 65.98	0	1634560..1635861	-	433	87199596	-	Saro_1579	-	acetyl-CoA hydrolase/transferase
1571	 65.64	0	1636020..1637672	+	550	87199597	-	Saro_1580	-	fumarate reductase/succinate dehydrogenase flavoprotein-like
1572	 62.45	0	1638057..1638317	-	86	87199598	-	Saro_1581	-	hypothetical protein
1573	 63.84	0	1638340..1639614	-	424	87199599	-	Saro_1582	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
1574	 65.36	0	1640051..1641124	-	357	87199600	-	Saro_1583	-	hypothetical protein
1575	 67.94	0	1641127..1642695	-	522	87199601	-	Saro_1584	-	carboxylesterase, type B
1576	 67.49	0	1642692..1643663	-	323	87199602	-	Saro_1585	-	dienelactone hydrolase
1577	 65.92	0	1643707..1645572	-	621	87199603	-	Saro_1586	-	4-hydroxyphenylpyruvate dioxygenase
1578	 64.45	0	1645775..1646542	+	255	87199604	-	Saro_1587	-	TetR family transcriptional regulator
1579	 68.37	0	1646637..1647869	+	410	87199605	-	Saro_1588	-	major facilitator transporter
1580	 64.43	0	1647915..1650911	+	998	87199606	-	Saro_1589	-	TonB-dependent receptor
1581	 66.79	0	1650970..1651800	+	276	87199607	-	Saro_1590	-	shikimate 5-dehydrogenase
1582	 67.97	0	1651802..1652491	-	229	87199608	-	Saro_1591	-	putative transmembrane transcriptional regulator (anti-sigma factor)
1583	 66.14	0	1652488..1653054	-	188	87199609	-	Saro_1592	-	sigma-24 (FecI-like)
1584	 68.51	+1	1653118..1654308	+	396	87199610	-	Saro_1593	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1585	 70.25	+1	1654437..1655300	+	287	87199611	-	Saro_1594	-	hypothetical protein
1586	 67.51	0	1655345..1658650	-	1101	87199612	-	Saro_1595	-	polysaccharide deacetylase
1587	 68.16	0	1658647..1659384	-	245	87199613	-	Saro_1596	-	Type IV secretory pathway VirJ component-like
1588	 66.78	0	1659381..1662014	-	877	87199614	-	Saro_1597	-	hypothetical protein
1589	 64.37	0	1662011..1662445	-	144	87199615	-	Saro_1598	-	hypothetical protein
1590	 65.07	0	1662598..1663284	+	228	87199616	-	Saro_1599	-	two component transcriptional regulator
1591	 68.73	+1	1663284..1664690	+	468	87199617	-	Saro_1600	-	periplasmic sensor signal transduction histidine kinase
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.