IslandPathversion 1.0

IslandPath Analysis: Novosphingobium aromaticivorans DSM 12444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 65.30 STD DEV: 3.21
Novosphingobium aromaticivorans DSM 12444, complete genome - 1..3561584
3324 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1189	 69.82	+1	1238854..1239360	-	168	87199215	-	Saro_1193	-	hypothetical protein
1190	 70.93	+1	1239972..1241567	+	531	87199216	-	Saro_1194	-	hypothetical protein
1191	 65.93	0	1242494..1243708	-	404	87199217	-	Saro_1195	-	argininosuccinate synthase
1192	 66.83	0	1243919..1245124	+	401	87199218	-	Saro_1196	-	Rieske (2Fe-2S) protein
1193	 64.59	0	1245211..1246557	-	448	87199219	-	Saro_1197	-	aldehyde dehydrogenase
1194	 68.30	0	1246715..1247386	-	223	87199220	-	Saro_1198	-	phosphoglycolate phosphatase
1195	 67.98	0	1247448..1248821	+	457	87199221	-	Saro_1199	-	UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase
1196	 64.26	0	1248898..1249146	+	82	87199222	-	Saro_1200	-	CopG-like DNA-binding protein
1197	 61.20	-1	1249150..1249515	+	121	87199223	-	Saro_1201	-	PilT protein-like
1198	 68.15	0	1249534..1251357	+	607	87199224	-	Saro_1202	-	D-fructose-6-phosphate amidotransferase
1199	 67.76	0	1251369..1251824	+	151	87199225	-	Saro_1203	-	tRNA/rRNA methyltransferase
1200	 69.84	+1	1252074..1252862	-	262	87199226	-	Saro_1204	-	hypothetical protein
1201	 65.04	0	1252859..1253782	-	307	87199227	-	Saro_1205	-	beta-lactamase-like
1202	 60.63	-1	1253875..1254222	+	115	87199228	-	Saro_1206	-	ArsR family transcriptional regulator
1203	 67.13	0	1254345..1254989	+	214	87199229	-	Saro_1207	-	twin-arginine translocation pathway signal
1204	 65.77	0	1255008..1256687	+	559	87199230	-	Saro_1208	-	glucose-methanol-choline oxidoreductase
1205	 69.06	+1	1256692..1258152	+	486	87199231	-	Saro_1209	-	major facilitator transporter
1206	 63.95	0	1258216..1258803	+	195	87199232	-	Saro_1210	-	metal-dependent phosphohydrolase
1207	 65.40	0	1258874..1260457	+	527	87199233	-	Saro_1211	-	acyl-CoA synthetase
1208	 66.16	0	1260614..1261603	-	329	87199234	-	Saro_1212	-	hypothetical protein
1209	 67.77	0	1261600..1264326	-	908	87199235	-	Saro_1213	-	hypothetical protein
1210	 68.02	0	1264328..1265212	-	294	87199236	-	Saro_1214	-	hypothetical protein
1211	 67.53	0	1265224..1265685	-	153	87199237	-	Saro_1215	-	hypothetical protein
1212	 67.05	0	1265710..1266237	-	175	87199238	-	Saro_1216	-	hypothetical protein
1213	 64.86	0	1266836..1267111	-	91	87199239	-	Saro_1217	-	histone-like DNA-binding protein
1214	 67.74	0	1267442..1268650	+	402	87199240	-	Saro_1218	-	secretion protein HlyD
1215	 64.18	0	1268657..1271791	+	1044	87199241	-	Saro_1219	-	hydrophobe/amphiphile efflux-1 HAE1
1216	 67.95	0	1271788..1273191	+	467	87199242	-	Saro_1220	-	RND efflux system, outer membrane lipoprotein, NodT
1217	 64.96	0	1273185..1274354	-	389	87199243	-	Saro_1221	-	acyl-CoA dehydrogenase-like
1218	 67.57	0	1274354..1275568	-	404	87199244	-	Saro_1222	-	acetyl-CoA acetyltransferase
1219	 66.02	0	1275620..1276849	-	409	87199245	-	Saro_1223	-	L-carnitine dehydratase/bile acid-inducible protein F
1220	 63.88	0	1276877..1278061	-	394	87199246	-	Saro_1224	-	acyl-CoA dehydrogenase-like
1221	 65.14	0	1278073..1278990	-	305	87199247	-	Saro_1225	-	short-chain dehydrogenase/reductase SDR
1222	 69.07	+1	1279093..1279842	+	249	87199248	-	Saro_1226	-	IclR family transcriptional regulator
1223	 66.12	0	1279961..1280869	+	302	87199249	-	Saro_1227	-	LysR family transcriptional regulator
1224	 63.85	0	1280878..1281339	-	153	87199250	-	Saro_1228	-	thioesterase superfamily protein
1225	 68.72	+1	1281400..1282374	-	324	87199251	-	Saro_1229	-	putative deoxyribodipyrimidine photolyase
1226	 67.30	0	1282400..1283035	-	211	87199252	-	Saro_1230	-	GTP cyclohydrolase
1227	 62.05	-1	1283080..1283751	+	223	87199253	-	Saro_1231	-	LuxR family transcriptional regulator
1228	 64.02	0	1283767..1284747	-	326	87199254	-	Saro_1232	-	signal transduction histidine kinase
1229	 61.04	-1	1285156..1285884	+	242	87199255	-	Saro_1233	-	extradiol ring-cleavage dioxygenase LigAB, LigA subunit
1230	 62.40	0	1285884..1286726	+	280	87199256	-	Saro_1234	-	protocatechuate 4,5-dioxygenase subunit beta
1231	 64.93	0	1286812..1287213	-	133	87199257	-	Saro_1235	-	hypothetical protein
1232	 63.96	0	1287299..1287925	-	208	87199258	-	Saro_1236	-	two component LuxR family transcriptional regulator
1233	 67.03	0	1287922..1289565	-	547	87199259	-	Saro_1237	-	putative signal transduction histidine kinase
1234	 60.91	-1	1289802..1290305	+	167	87199260	-	Saro_1238	-	LuxR family transcriptional regulator
1235	 68.07	0	1290408..1290764	+	118	87199261	-	Saro_1239	-	hypothetical protein
1236	 63.09	0	1290802..1291248	+	148	87199262	-	Saro_1240	-	hypothetical protein
1237	 68.98	+1	1291310..1291828	+	172	87199263	-	Saro_1241	-	MarR family transcriptional regulator
1238	 66.67	0	1292770..1293186	+	138	87199264	-	Saro_1243	-	hypothetical protein
1239	 64.78	0	1293513..1293884	+	123	87199265	rpsL	Saro_1244	-	30S ribosomal protein S12
1240	 63.06	0	1293986..1294456	+	156	87199266	-	Saro_1245	-	30S ribosomal protein S7
1241	 62.28	0	1294541..1296613	+	690	87199267	-	Saro_1246	-	elongation factor G
1242	 63.39	0	1296706..1297896	+	396	87199268	-	Saro_1247	-	elongation factor Tu
1243	 61.54	-1	1298066..1298377	+	103	87199269	-	Saro_1248	-	30S ribosomal protein S10
1244	 64.02	0	1298719..1299474	+	251	87199270	rplC	Saro_1249	-	50S ribosomal protein L3
1245	 63.62	0	1299478..1300101	+	207	87199271	rplD	Saro_1250	-	50S ribosomal protein L4
1246	 60.07	-1	1300094..1300396	+	100	87199272	rplW	Saro_1251	-	50S ribosomal protein L23
1247	 64.40	0	1300406..1301242	+	278	87199273	rplB	Saro_1252	-	50S ribosomal protein L2
1248	 61.29	-1	1301249..1301527	+	92	87199274	-	Saro_1253	-	SSU ribosomal protein S19P
1249	 63.76	0	1301527..1301904	+	125	87199275	rplV	Saro_1254	-	50S ribosomal protein L22
1250	 63.65	0	1301907..1302602	+	231	87199276	rpsC	Saro_1255	-	30S ribosomal protein S3
1251	 67.13	0	1302625..1303059	+	144	87199277	rplP	Saro_1256	-	50S ribosomal protein L16
1252	 61.84	-1	1303070..1303276	+	68	87199278	-	Saro_1257	-	50S ribosomal protein L29
1253	 61.48	-1	1303287..1303556	+	89	87199279	-	Saro_1258	-	SSU ribosomal protein S17P
1254	 63.69	0	1303671..1304039	+	122	87199280	rplN	Saro_1259	-	50S ribosomal protein L14
1255	 64.47	0	1304039..1304356	+	105	87199281	rplX	Saro_1260	-	50S ribosomal protein L24
1256	 60.48	-1	1304349..1304930	+	193	87199282	rplE	Saro_1261	-	50S ribosomal protein L5
1257	 62.42	0	1304959..1305264	+	101	87199283	rpsN	Saro_1262	-	30S ribosomal protein S14
1258	 64.90	0	1305275..1305670	+	131	87199284	rpsH	Saro_1263	-	30S ribosomal protein S8
1259	 62.92	0	1305670..1306203	+	177	87199285	rplF	Saro_1264	-	50S ribosomal protein L6
1260	 68.09	0	1306203..1306553	+	116	87199286	rplR	Saro_1265	-	50S ribosomal protein L18
1261	 67.23	0	1306556..1307269	+	237	87199287	rpsE	Saro_1266	-	30S ribosomal protein S5
1262	 63.28	0	1307276..1307452	+	58	87199288	rpmD	Saro_1267	-	50S ribosomal protein L30
1263	 65.31	0	1307618..1308133	+	171	161760695	rplO	Saro_1268	-	50S ribosomal protein L15
1264	 61.77	-1	1308286..1309653	+	455	87199290	secY	Saro_1269	-	preprotein translocase subunit SecY
1265	 67.28	0	1309682..1310332	+	216	87199291	-	Saro_1270	-	adenylate kinase
1266	 65.58	0	1310380..1311117	+	245	87199292	-	Saro_1271	-	hypothetical protein
1267	 62.46	0	1311265..1312620	+	451	87199293	-	Saro_1272	-	glutamate dehydrogenase
1268	 66.67	0	1312675..1313022	-	115	87199294	-	Saro_1273	-	hypothetical protein
1269	 61.85	-1	1313066..1313875	-	269	87199295	-	Saro_1274	-	response regulator receiver domain-containing protein
1270	 63.68	0	1314279..1315349	+	356	87199296	recA	Saro_1275	-	recombinase A
1271	 64.43	0	1315537..1316163	+	208	87199297	-	Saro_1276	-	glutathione S-transferase-like
1272	 67.88	0	1316192..1318252	-	686	87199298	-	Saro_1277	-	elongation factor G
1273	 67.39	0	1318409..1319236	+	275	87199299	-	Saro_1278	-	putative methyltransferase
1274	 66.67	0	1319280..1321925	+	881	87199300	alaS	Saro_1279	-	alanyl-tRNA synthetase
1275	 66.06	0	1321929..1322093	-	54	87199301	-	Saro_1280	-	hypothetical protein
1276	 64.65	0	1322145..1323929	-	594	87199302	-	Saro_1281	-	sodium/hydrogen exchanger
1277	 62.17	0	1324213..1325436	-	407	87199303	-	Saro_1282	-	isocitrate dehydrogenase
1278	 66.41	0	1325623..1326387	+	254	87199304	-	Saro_1283	-	short chain enoyl-CoA hydratase
1279	 69.96	+1	1326432..1327220	-	262	87199305	-	Saro_1284	-	3-deoxy-manno-octulosonate cytidylyltransferase
1280	 70.04	+1	1327217..1328431	-	404	87199306	-	Saro_1285	-	capsule polysaccharide biosynthesis
1281	 69.86	+1	1328422..1329735	-	437	87199307	-	Saro_1286	-	capsule polysaccharide biosynthesis
1282	 63.80	0	1330047..1330430	-	127	87199308	-	Saro_1287	-	response regulator receiver domain-containing protein
1283	 68.65	+1	1330636..1331544	+	302	87199309	-	Saro_1288	-	N-formylglutamate amidohydrolase
1284	 63.72	0	1331879..1332658	-	259	87199310	-	Saro_1289	-	SapC
1285	 70.19	+1	1332757..1334175	-	472	87199311	-	Saro_1290	-	FAD linked oxidase-like
1286	 66.84	0	1334341..1334913	+	190	87199312	-	Saro_1291	-	hypothetical protein
1287	 66.09	0	1335055..1336449	+	464	87199313	-	Saro_1292	-	DEAD/DEAH box helicase-like
1288	 65.88	0	1336587..1338884	-	765	87199314	-	Saro_1293	-	ATP-dependent DNA helicase Rep
65.30	MEAN

3.21	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.