IslandPathversion 1.0

IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.50 STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
201	 38.54	0	210621..211427	+	268	152989954	-	NIS_0205	-	hypothetical protein
202	 41.80	0	211402..212334	-	310	152989955	-	NIS_0206	-	A/G-specific adenine glycosylase
203	 41.45	0	212340..213164	-	274	152989956	-	NIS_0207	-	hypothetical protein
204	 43.22	0	213212..213646	+	144	152989957	-	NIS_0208	-	hypothetical protein
205	 33.45	-1	213650..216286	-	878	152989958	-	NIS_0209	-	signal transduction response regulator
206	 42.98	0	216513..216875	-	120	152989959	dgkA	NIS_0210	-	diacylglycerol kinase
207	 41.92	0	216872..217861	-	329	152989960	-	NIS_0211	-	hypothetical protein
208	 39.66	0	217854..219512	-	552	152989961	dnaG	NIS_0212	-	DNA primase DnaG
209	 39.09	0	219523..220512	+	329	152989962	-	NIS_0213	-	hypothetical protein
210	 42.02	0	220490..220915	+	141	152989963	rnhA	NIS_0214	-	ribonuclease H
211	 42.58	0	220985..221665	+	226	152989964	rnc	NIS_0215	-	ribonuclease III
212	 46.00	+1	221658..222731	+	357	152989965	aroC	NIS_0216	-	chorismate synthase
213	 42.51	0	222964..224205	-	413	152989966	-	NIS_0217	-	hypothetical protein
214	 40.44	0	224216..224764	-	182	152989967	rnhB	NIS_0218	-	ribonuclease HII
215	 26.22	-2	224820..225044	+	74	152989968	-	NIS_0219	-	prevent-host-death protein
216	 27.99	-2	225044..225436	+	130	152989969	-	NIS_0220	-	hypothetical protein
217	 33.52	-1	225532..226590	-	352	152989970	-	NIS_0221	-	hypothetical protein
218	 42.63	0	226719..227030	+	103	152989971	rpsJ	NIS_0222	-	30S ribosomal protein S10
219	 40.24	0	227040..227618	+	192	152989972	rplC	NIS_0223	-	50S ribosomal protein L3
220	 41.30	0	227615..228229	+	204	152989973	rplD	NIS_0224	-	50S ribosomal protein L4
221	 35.82	0	228231..228512	+	93	152989974	rplW	NIS_0225	-	50S ribosomal protein L23
222	 44.69	+1	228523..229350	+	275	152989975	rplB	NIS_0226	-	50S ribosomal protein L2
223	 38.65	0	229362..229643	+	93	152989976	rpsS	NIS_0227	-	30S ribosomal protein S19
224	 45.87	+1	229653..229979	+	108	152989977	rplV	NIS_0228	-	50S ribosomal protein L22
225	 41.45	0	229979..230668	+	229	152989978	rpsC	NIS_0229	-	30S ribosomal protein S3
226	 41.31	0	230671..231096	+	141	152989979	rplP	NIS_0230	-	50S ribosomal protein L16
227	 41.03	0	231083..231277	+	64	152989980	rpmC	NIS_0231	-	50S ribosomal protein L29
228	 35.71	0	231277..231528	+	83	152989981	rpsQ	NIS_0232	-	30S ribosomal protein S17
229	 39.57	0	231528..231896	+	122	152989982	rplN	NIS_0233	-	50S ribosomal protein L14
230	 38.75	0	231896..232135	+	79	152989983	rplX	NIS_0234	-	50S ribosomal protein L24
231	 40.22	0	232132..232683	+	183	152989984	rplE	NIS_0235	-	50S ribosomal protein L5
232	 38.17	0	232683..232868	+	61	152989985	rpsN	NIS_0236	-	30S ribosomal protein S14
233	 33.33	-1	232927..233331	+	134	152989986	rpsH	NIS_0237	-	30S ribosomal protein S8
234	 39.48	0	233380..233916	+	178	152989987	rplF	NIS_0238	-	50S ribosomal protein L6
235	 38.38	0	233927..234283	+	118	152989988	rplR	NIS_0239	-	50S ribosomal protein L18
236	 38.29	0	234293..234736	+	147	152989989	rpsE	NIS_0240	-	30S ribosomal protein S5
237	 38.56	0	234740..235141	+	133	152989990	rplO	NIS_0241	-	50S ribosomal protein L15
238	 40.14	0	235141..236403	+	420	152989991	secY	NIS_0242	-	preprotein translocase subunit SecY
239	 40.68	0	236403..237164	+	253	152989992	map	NIS_0243	-	methionine aminopeptidase
240	 38.81	0	237165..237383	+	72	152989993	infA	NIS_0244	-	translation initiation factor IF-1
241	 34.21	-1	237542..237655	+	37	152989994	rpmJ	NIS_0245	-	50S ribosomal protein L36
242	 38.02	0	237659..238021	+	120	152989995	rpsM	NIS_0246	-	30S ribosomal protein S13
243	 40.20	0	238033..238425	+	130	152989996	rpsK	NIS_0247	-	30S ribosomal protein S11
244	 40.35	0	238481..239107	+	208	152989997	rpsD	NIS_0248	-	30S ribosomal protein S4
245	 36.47	0	239139..240125	+	328	152989998	rpoA	NIS_0249	-	DNA-directed RNA polymerase subunit alpha
246	 39.03	0	240136..240486	+	116	152989999	rplQ	NIS_0250	-	50S ribosomal protein L17
247	 41.25	0	240586..240888	+	100	152990000	-	NIS_0251	-	hypothetical protein
248	 33.16	-1	240889..241449	+	186	152990001	-	NIS_0252	-	hypothetical protein
249	 37.82	0	241446..242738	+	430	152990002	murE	NIS_0253	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
250	 40.57	0	242838..243224	+	128	152990003	-	NIS_0254	-	2Fe-2S ferredoxin
251	 40.16	0	243227..243592	+	121	152990004	panD	NIS_0255	-	aspartate alpha-decarboxylase
252	 36.22	0	243604..243915	+	103	152990005	-	NIS_0256	-	hypothetical protein
253	 38.95	0	243916..244788	+	290	152990006	ispA	NIS_0257	-	geranyltranstransferase
254	 42.71	0	244792..246732	+	646	152990007	-	NIS_0258	-	transketolase
255	 35.69	0	246831..247889	+	352	152990008	-	NIS_0259	-	hypothetical protein
256	 41.92	0	248459..249658	+	399	152990009	tufA	NIS_0260	-	elongation factor Tu
257	 30.07	-2	249695..249847	+	50	152990010	rpmG	NIS_0261	-	50S ribosomal protein L33
258	 31.67	-2	249970..250149	+	59	152990011	secE	NIS_0262	-	preprotein translocase subunit SecE
259	 36.53	0	250162..250692	+	176	152990012	nusG	NIS_0263	-	transcription antitermination protein NusG
260	 38.03	0	250713..251138	+	141	152990013	rplK	NIS_0264	-	50S ribosomal protein L11
261	 40.68	0	251194..251901	+	235	152990014	rplA	NIS_0265	-	50S ribosomal protein L1
262	 41.52	0	251977..252489	+	170	152990015	rplJ	NIS_0266	-	50S ribosomal protein L10
263	 37.50	0	252510..252893	+	127	152990016	rplL	NIS_0267	-	50S ribosomal protein L7/L12
264	 40.57	0	253012..257172	+	1386	152990017	rpoB	NIS_0268	-	DNA-directed RNA polymerase subunit beta
265	 42.00	0	257150..261673	+	1507	152990018	rpoC	NIS_0269	-	DNA-directed RNA polymerase, beta' subunit
266	 40.80	0	261763..262137	+	124	152990019	rpsL	NIS_0270	-	30S ribosomal protein S12
267	 39.49	0	262246..262716	+	156	152990020	rpsG	NIS_0271	-	30S ribosomal protein S7
268	 42.14	0	262818..264896	+	692	152990021	fusA	NIS_0272	-	elongation factor G
269	 38.77	0	265347..266432	+	361	152990022	cheB	NIS_0273	-	protein-glutamate methylesterase CheB
270	 29.90	-2	266407..266931	+	174	152990023	-	NIS_0274	-	hypothetical protein
271	 31.51	-2	266924..267745	+	273	152990024	-	NIS_0275	-	chemotaxis protein methyltransferase
272	 31.19	-2	267742..269046	-	434	152990025	-	NIS_0276	-	hypothetical protein
273	 35.97	0	269049..270941	-	630	152990026	-	NIS_0277	-	methyl-accepting chemotaxis protein
274	 43.70	+1	271181..271450	+	89	152990027	-	NIS_0278	-	RNA-binding protein RNP-1
275	 38.19	0	271480..272736	-	418	152990028	-	NIS_0279	-	DNA polymerase IV
276	 41.36	0	272853..273512	+	219	152990029	-	NIS_0280	-	phage repressor protein
277	 41.10	0	273509..274255	+	248	152990030	-	NIS_0281	-	hypothetical protein
278	 37.94	0	274234..274689	+	151	152990031	-	NIS_0282	-	hypothetical protein
279	 40.77	0	274686..275936	-	416	152990032	-	NIS_0283	-	UDP-glucose/GDP-mannose dehydrogenase
280	 38.83	0	275933..276241	-	102	152990033	-	NIS_0284	-	hypothetical protein
281	 35.43	-1	276287..276763	+	158	152990034	-	NIS_0285	-	hypothetical protein
282	 41.73	0	276756..277601	+	281	152990035	nfo	NIS_0286	-	endonuclease IV
283	 39.34	0	277604..279334	+	576	152990036	-	NIS_0287	-	AAA family ATPase
284	 40.46	0	279469..279861	+	130	152990037	nuoA	NIS_0288	-	NADH dehydrogenase subunit A
285	 44.90	+1	279843..280352	+	169	152990038	nuoB	NIS_0289	-	NADH dehydrogenase subunit B
286	 42.05	0	280352..281143	+	263	152990039	nuoC	NIS_0290	-	NADH dehydrogenase subunit C
287	 45.01	+1	281153..282385	+	410	152990040	nuoD	NIS_0291	-	NADH dehydrogenase subunit D
288	 38.68	0	282399..282641	+	80	152990041	-	NIS_0292	-	hypothetical protein
289	 44.98	+1	282654..284696	+	680	152990042	-	NIS_0293	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
290	 42.38	0	284706..286982	+	758	152990043	-	NIS_0294	-	NADH-quinone oxidoreductase, chain G
291	 42.27	0	286975..289458	+	827	152990044	nuoG	NIS_0295	-	NADH dehydrogenase subunit G
292	 43.81	+1	289460..290452	+	330	152990045	nuoH	NIS_0296	-	NADH dehydrogenase subunit H
293	 38.89	0	290462..291073	+	203	152990046	nuoI	NIS_0297	-	NADH dehydrogenase subunit I
294	 39.82	0	291085..291639	+	184	152990047	nuoJ	NIS_0298	-	NADH dehydrogenase subunit J
295	 37.62	0	291636..291938	+	100	152990048	nuoK	NIS_0299	-	NADH dehydrogenase subunit K
296	 40.45	0	291942..293837	+	631	152990049	nuoL	NIS_0300	-	NADH dehydrogenase subunit L
297	 38.18	0	293849..295375	+	508	152990050	nuoM	NIS_0301	-	NADH dehydrogenase subunit M
298	 39.80	0	295375..296859	+	494	152990051	nuoN	NIS_0302	-	NADH dehydrogenase subunit N
299	 35.67	0	296856..297755	-	299	152990052	miaA	NIS_0303	-	tRNA delta(2)-isopentenylpyrophosphate transferase
300	 39.61	0	297799..298659	+	286	152990053	ubiA	NIS_0304	-	prenyltransferase
39.50	MEAN

3.88	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.