IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis Z2491



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.77 STD DEV: 7.09
Neisseria meningitidis Z2491, complete genome - 1..2184406
2049 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
875	 57.71	0	930083..930283	+	66	15793922	-	NMA0965	-	ferredoxin
876	 43.59	-1	930449..930682	+	77	15793923	-	NMA0966	-	thioredoxin
877	 55.44	0	931156..932019	-	287	15793924	rfbD	NMA0967	-	dTDP-4-dehydrorhamnose reductase
878	 48.84	0	932217..933080	+	287	15793925	hemH	NMA0968	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
879	 54.50	0	933317..935437	+	706	15793926	pnp	NMA0969	-	polynucleotide phosphorylase/polyadenylase
880	 52.02	0	935510..936178	-	222	15793927	-	NMA0970	-	hypothetical protein
881	 50.17	0	936192..936488	-	98	15793928	-	NMA0971	-	lipoprotein
882	 55.52	0	936625..937476	+	283	15793929	dapF	NMA0972	-	diaminopimelate epimerase
883	 51.98	0	937473..938078	+	201	15793930	-	NMA0973	-	integral membrane protein
884	 53.27	0	938272..939204	+	310	15793931	cysK	NMA0974	-	cysteine synthase
885	 54.84	0	939791..940669	+	292	15793932	-	NMA0975	-	integral membrane protein
886	 50.06	0	940934..941812	-	292	15793933	lepB	NMA0976	-	signal peptidase I
887	 52.01	0	942096..943889	-	597	15793934	lepA	NMA0977	-	GTP-binding protein LepA
888	 54.42	0	944034..944735	-	233	15793935	pfs	NMA0978	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
889	 53.55	0	944921..946033	+	370	15793936	pilT2	NMA0979	-	pilus retraction protein
890	 53.07	0	946067..947044	+	325	15793937	holB	NMA0980	-	DNA polymerase III subunit delta'
891	 50.43	0	947048..947398	+	116	15793938	-	NMA0981	-	pilus biogenesis protein
892	 53.33	0	947403..948182	+	259	15793939	-	NMA0982	-	hypothetical protein
893	 54.59	0	948231..948437	+	68	15793940	-	NMA0983	-	haemolysin
894	 52.24	0	948538..948849	+	103	15793941	-	NMA0984	-	hypothetical protein
895	 56.30	0	948955..949581	+	208	15793942	upp	NMA0985	-	uracil phosphoribosyltransferase
896	 51.40	0	949604..949924	+	106	15793943	-	NMA0986	-	hypothetical protein
897	 49.88	0	950175..950597	+	140	15793944	-	NMA0987	-	secreted protein
898	 54.93	0	950636..951376	+	246	15793945	hemD	NMA0988	-	uroporphyrinogen-III synthase
899	 54.59	0	951451..952725	+	424	15793946	-	NMA0989	-	hypothetical protein
900	 54.84	0	952722..953939	+	405	15793947	-	NMA0990	-	hypothetical protein
901	 57.00	0	954014..955078	+	354	15793948	hemE	NMA0991	-	uroporphyrinogen decarboxylase
902	 58.62	0	955264..956643	+	459	15793949	radA	NMA0992	-	DNA repair protein RadA
903	 55.62	0	956919..957398	-	159	15793950	-	NMA0993	-	periplasmic protein
904	 56.11	0	957530..957889	-	119	15793951	-	NMA0994	-	periplasmic protein
905	 58.01	0	957928..961542	-	1204	15793952	recB	NMA0995	-	exodeoxyribonuclease V beta chain
906	 58.75	0	961775..962683	-	302	15793953	-	NMA0996	-	hypothetical protein
907	 53.14	0	962968..963795	+	275	15793954	-	NMA0997	-	amino acid permease substrate-binding protein
908	 52.44	0	963785..964501	+	238	15793955	-	NMA0999	-	amino acid permease integral membrane protein
909	 52.91	0	964511..965266	+	251	15793956	-	NMA1000	-	amino acid permease ATP-binding protein
910	 55.31	0	965286..966668	-	460	15793957	pgm	NMA1001	-	phosphoglucomutase
911	 51.18	0	966831..967340	-	169	15793958	ppiB	NMA1002	-	peptidyl-prolyl cis-trans isomerase B
912	 55.58	0	967459..968874	-	471	15793959	-	NMA1003	-	transmembrane transport protein
913	 55.09	0	969731..970309	-	192	15793960	pth	NMA1004	-	peptidyl-tRNA hydrolase
914	 55.20	0	970362..970640	-	92	15793961	-	NMA1005	-	hypothetical protein
915	 49.77	0	970633..971076	-	147	15793962	-	NMA1006	-	hypothetical protein
916	 55.89	0	971286..973253	-	655	15793963	ftsH	NMA1007	-	ATP-dependent zinc metallopeptidase
917	 53.62	0	973317..973937	-	206	15793964	ftsJ	NMA1008	-	cell division protein
918	 51.93	0	974047..974331	+	94	15793965	-	NMA1009	-	hypothetical protein
919	 56.48	0	974353..974460	-	35	15793966	-	NMA1010	-	hypothetical protein
920	 56.05	0	974499..975515	+	338	15793967	hemB	NMA1011	-	delta-aminolevulinic acid dehydratase
921	 52.68	0	975578..976735	-	385	15793968	-	NMA1012	-	carbon-sulphur lyase
922	 52.20	0	976927..977700	+	257	15793969	-	NMA1013	-	putative GTP cyclohydrolase
923	 50.57	0	977712..977885	+	57	15793970	-	NMA1014	-	hypothetical protein
924	 52.85	0	977900..978565	+	221	15793971	-	NMA1015	-	NAD(P)H-flavin oxidoreductase
925	 56.39	0	978620..979378	-	252	15793972	-	NMA1016	-	RNA-binding protein
926	 57.24	0	979403..980293	-	296	15793973	ppnK	NMA1017	-	inorganic polyphosphate/ATP-NAD kinase
927	 61.02	+1	980313..980879	-	188	15793974	-	NMA1018	-	hypothetical protein
928	 59.59	+1	980930..981706	-	258	15793975	-	NMA1019	-	hypothetical protein
929	 54.53	0	981761..982411	-	216	15793976	-	NMA1020	-	TetR family transcriptional regulator
930	 55.04	0	982423..983463	-	346	15793977	murB	NMA1021	-	UDP-N-acetylenolpyruvoylglucosamine reductase
931	 57.03	0	983641..985020	-	459	15793978	-	NMA1022	-	multidrug efflux protein
932	 59.11	+1	985355..986506	+	383	15793979	hisZ	NMA1023	-	ATP phosphoribosyltransferase regulatory subunit
933	 56.81	0	986609..987907	+	432	15793980	purA	NMA1024	-	adenylosuccinate synthetase
934	 43.68	-1	988026..988286	+	86	15793981	-	NMA1025	-	hypothetical protein
935	 41.55	-1	988319..988756	+	145	15793982	-	NMA1026	-	hypothetical protein
936	 40.88	-1	988770..989180	+	136	15793983	-	NMA1027	-	DNA-binding protein
937	 45.29	0	989297..989689	+	130	15793984	-	NMA1028	-	DNA-binding protein
938	 48.68	0	989750..989977	+	75	15793985	-	NMA1029	-	hypothetical protein
939	 50.79	0	989952..990455	+	167	15793986	-	NMA1030	-	hypothetical protein
940	 55.48	0	990756..991595	-	279	15793987	htpX	NMA1031	-	heat shock protein HtpX
941	 54.17	0	991810..992457	+	215	15793988	adk	NMA1032	-	adenylate kinase
942	 54.66	0	992983..993723	+	246	15793989	pyrF	NMA1033	-	orotidine 5'-phosphate decarboxylase
943	 56.58	0	993778..994749	+	323	15793990	rfaE	NMA1034	-	DP-heptose synthetase
944	 33.82	-2	994786..996021	+	411	15793991	nmgII	NMA1035	-	modification methylase
945	 31.55	-2	996023..997141	+	372	15793992	nmgI	NMA1036	-	type II restriction endonuclease
946	 50.45	0	997182..998186	+	334	15793993	rfaD	NMA1037	-	ADP-L-glycero-D-mannoheptose epimerase
947	 52.17	0	998259..999803	+	514	15793994	-	NMA1038	-	type I restriction-modification system protein
948	 52.23	0	999800..1000810	+	336	15793995	-	NMA1039	-	DNA-binding protein
949	 54.47	0	1005418..1007697	-	759	15793996	clpA	NMA1045	-	ATP-dependent protease ATP-binding protein
950	 50.96	0	1007701..1008012	-	103	15793997	-	NMA1046	-	hypothetical protein
951	 46.57	0	1008270..1008473	+	67	15793998	cspA	NMA1047	-	transcriptional regulator
952	 60.44	+1	1008771..1010102	-	443	15793999	-	NMA1048	-	hypothetical protein
953	 51.56	0	1010193..1010768	+	191	15794000	-	NMA1049	-	hypothetical protein
954	 52.94	0	1010815..1011528	+	237	15794001	-	NMA1051	-	hypothetical protein
955	 57.26	0	1011597..1013297	+	566	15794002	recJ	NMA1052	-	single-stranded-DNA-specific exonuclease
956	 55.65	0	1013598..1014959	+	453	15794003	pcnB	NMA1053	-	poly(A) polymerase
957	 50.46	0	1015129..1015455	+	108	15794004	-	NMA1054	-	periplasmic protein
958	 54.72	0	1015560..1016513	-	317	15794005	-	NMA1056	-	hypothetical protein
959	 51.95	0	1016652..1017344	-	230	15794006	-	NMA1057	-	glycosyl transferase
960	 54.11	0	1017161..1017853	-	230	15794007	-	NMA1058	-	hypothetical protein
961	 51.21	0	1018045..1018749	+	234	15794008	-	NMA1059	-	periplasmic protein
962	 53.97	0	1018813..1019379	-	188	15794009	dcd	NMA1060	-	deoxycytidine triphosphate deaminase
963	 50.84	0	1019445..1019861	-	138	15794010	-	NMA1061	-	periplasmic protein
964	 52.44	0	1019913..1020812	-	299	15794011	rdgC	NMA1062	-	recombination associated protein
965	 53.09	0	1020843..1022300	-	485	15794012	engA	NMA1063	-	GTP-binding protein EngA
966	 51.43	0	1022454..1023083	-	209	15794013	-	NMA1064	-	membrane protein
967	 52.24	0	1023084..1024379	-	431	15794014	hisS	NMA1065	-	histidyl-tRNA synthetase
968	 46.42	0	1024473..1025129	-	218	15794015	-	NMA1066	-	periplasmic protein
969	 41.67	-1	1025187..1025378	-	63	15794016	-	NMA1067	-	hypothetical protein
970	 27.93	-2	1025411..1025947	-	178	15794017	-	NMA1068	-	hypothetical protein
971	 42.79	-1	1026115..1026315	-	66	15794018	-	NMA1070	-	hypothetical protein
972	 31.19	-2	1026430..1026849	-	139	15794019	-	NMA1071	-	hypothetical protein
973	 35.52	-2	1026907..1027272	-	121	15794020	-	NMA1072	-	hypothetical protein
974	 47.99	0	1027254..1027799	-	181	15794021	-	NMA1073	-	hypothetical protein
51.77	MEAN

7.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.