IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1656	 62.28	+1	1787384..1788181	+	265	59802129	truA	NGO1811	-	tRNA pseudouridine synthase A
1657	 52.63	0	1788698..1789744	+	348	59802130	-	NGO1812	-	major outer membrane protein porin P.IB
1658	 53.20	0	1790265..1791185	-	306	59802131	-	NGO1813	-	LysR family transcriptional regulator
1659	 44.32	-1	1791189..1791452	-	87	59802132	-	NGO1814	-	hypothetical protein
1660	 44.82	-1	1792300..1793013	-	237	59802133	minC	NGO1816	-	septum formation inhibitor
1661	 46.34	0	1793160..1793528	-	122	59802134	rplQ	NGO1817	-	50S ribosomal protein L17
1662	 42.35	-1	1793552..1794538	-	328	59802135	-	NGO1818	-	DNA-directed RNA polymerase subunit alpha
1663	 43.80	-1	1794564..1795184	-	206	59802136	rpsD	NGO1819	-	30S ribosomal protein S4
1664	 45.20	-1	1795204..1795599	-	131	59802137	-	NGO1820	-	30S ribosomal protein S11
1665	 45.45	-1	1795619..1795981	-	120	59802138	rpsM	NGO1821	-	30S ribosomal protein S13
1666	 37.90	-2	1796181..1796399	-	72	59802139	infA	NGO18211	-	translation initiation factor IF-1
1667	 37.15	-2	1796404..1797714	-	436	59802140	secY	NGO1822	-	preprotein translocase subunit SecY
1668	 42.53	-1	1797726..1798160	-	144	59802141	rplO	NGO1823	-	50S ribosomal protein L15
1669	 40.86	-1	1798162..1798347	-	61	59802142	rpmD	NGO18231	-	50S ribosomal protein L30
1670	 43.74	-1	1798340..1798858	-	172	59802143	rpsE	NGO1824	-	30S ribosomal protein S5
1671	 43.50	-1	1798877..1799230	-	117	59802144	rplR	NGO18241	-	50S ribosomal protein L18
1672	 40.82	-1	1799244..1799777	-	177	59802145	rplF	NGO1825	-	50S ribosomal protein L6
1673	 39.44	-2	1799791..1800183	-	130	59802146	rpsH	NGO1826	-	30S ribosomal protein S8
1674	 46.08	-1	1800199..1800504	-	101	59802147	rpsN	NGO18261	-	30S ribosomal protein S14
1675	 38.89	-2	1800507..1801046	-	179	59802148	rplE	NGO1827	-	50S ribosomal protein L5
1676	 38.27	-2	1801056..1801379	-	107	59802149	rplX	NGO1828	-	50S ribosomal protein L24
1677	 44.44	-1	1801391..1801759	-	122	59802150	rplN	NGO1829	-	50S ribosomal protein L14
1678	 35.61	-2	1801981..1802244	-	87	59802151	rpsQ	NGO1830	-	30S ribosomal protein S17
1679	 38.54	-2	1802244..1802435	-	63	59802152	-	NGO1831	-	50S ribosomal protein L29
1680	 47.00	0	1802435..1802851	-	138	59802153	rplP	NGO18311	-	50S ribosomal protein L16
1681	 44.30	-1	1802835..1803527	-	230	59802154	rpsC	NGO1832	-	30S ribosomal protein S3
1682	 41.82	-1	1803537..1803866	-	109	59802155	rplV	NGO1833	-	50S ribosomal protein L22
1683	 45.16	-1	1803875..1804153	-	92	59802156	rpsS	NGO1834	-	30S ribosomal protein S19
1684	 51.08	0	1804159..1804992	-	277	59802157	rplB	NGO1835	-	50S ribosomal protein L2
1685	 42.99	-1	1804998..1805318	-	106	59802158	rplW	NGO1836	-	50S ribosomal protein L23
1686	 47.34	0	1805309..1805929	-	206	59802159	rplD	NGO1837	-	50S ribosomal protein L4
1687	 50.54	0	1805929..1806573	-	214	59802160	rplC	NGO1838	-	50S ribosomal protein L3
1688	 45.31	-1	1806791..1806982	-	63	59802161	-	NGO1839	-	hypothetical protein
1689	 46.47	0	1807359..1807670	-	103	59802162	rpsJ	NGO1841	-	30S ribosomal protein S10
1690	 53.08	0	1807688..1808872	-	394	59802163	-	NGO1842	-	elongation factor Tu
1691	 49.67	0	1808960..1811065	-	701	59802164	-	NGO1843	-	elongation factor G
1692	 49.68	0	1811084..1811554	-	156	59802165	-	NGO1844	-	30S ribosomal protein S7
1693	 50.54	0	1811672..1812043	-	123	59802166	rpsL	NGO1845	-	30S ribosomal protein S12
1694	 42.00	-1	1812222..1812371	-	49	59802167	-	NGO1846	-	hypothetical protein
1695	 48.92	0	1812378..1813307	-	309	59802168	-	NGO1847	-	hypothetical protein
1696	 55.56	0	1813279..1813521	-	80	59802169	-	NGO1848	-	hypothetical protein
1697	 41.24	-1	1813761..1814822	-	353	59802170	-	NGO1849	-	hypothetical protein
1698	 51.01	0	1815110..1819285	-	1391	59802171	-	NGO1850	-	DNA-directed RNA polymerase subunit beta'
1699	 50.25	0	1819438..1823616	-	1392	59802172	rpoB	NGO1851	-	DNA-directed RNA polymerase subunit beta
1700	 44.09	-1	1823807..1824178	-	123	59802173	rplL	NGO1852	-	50S ribosomal protein L7/L12
1701	 47.31	0	1824236..1824736	-	166	59802174	rplJ	NGO1853	-	50S ribosomal protein L10
1702	 44.54	-1	1824964..1825659	-	231	59802175	rplA	NGO1854	-	50S ribosomal protein L1
1703	 43.91	-1	1825659..1826093	-	144	59802176	rplK	NGO1855	-	50S ribosomal protein L11
1704	 43.58	-1	1826194..1826730	-	178	59802177	nusG	NGO1856	-	transcription antitermination protein NusG
1705	 36.92	-2	1826732..1827010	-	92	59802178	secE	NGO1857	-	preprotein translocase subunit SecE
1706	 53.16	0	1827207..1828391	-	394	59802179	-	NGO1858	-	elongation factor Tu
1707	 49.60	0	1828808..1829059	-	83	59802180	-	NGO1859	-	putative ferredoxin
1708	 53.33	0	1829182..1829751	-	189	59802181	-	NGO1860	-	putative DNA methylase
1709	 51.92	0	1829854..1830192	-	112	59802182	-	NGO1861	-	hypothetical protein
1710	 54.36	0	1832027..1834333	-	768	59802183	-	NGO1863	-	DNA topoisomerase I
1711	 53.68	0	1834411..1834872	-	153	59802184	-	NGO1864	-	hypothetical protein
1712	 61.28	+1	1834898..1836085	-	395	59802185	-	NGO1865	-	hypothetical protein
1713	 56.57	0	1836176..1837453	-	425	59802186	-	NGO1866	-	putative two-component system transcriptional response regulator
1714	 57.52	0	1837446..1839566	-	706	59802187	-	NGO1867	-	putative two-component system sensor kinase
1715	 54.83	0	1839566..1840165	-	199	59802188	-	NGO1868	-	hypothetical protein
1716	 58.73	0	1840131..1841390	-	419	59802189	-	NGO1869	-	putative 16S RNA methyltransferase
1717	 59.98	+1	1841469..1842395	-	308	59802190	-	NGO1870	-	hypothetical protein
1718	 54.96	0	1842483..1842986	-	167	59802191	def	NGO1871	-	peptide deformylase
1719	 44.44	-1	1843059..1843256	-	65	59802192	-	NGO1872	-	hypothetical protein
1720	 55.01	0	1843284..1844621	+	445	59802193	-	NGO1873	-	hypothetical protein
1721	 50.91	0	1844694..1844858	+	54	59802194	-	NGO1874	-	hypothetical protein
1722	 53.92	0	1845042..1845692	-	216	59802195	-	NGO1875	-	hypothetical protein
1723	 56.43	0	1845754..1846212	-	152	59802196	-	NGO1876	-	aspartate carbamoyltransferase regulatory subunit
1724	 58.41	0	1846222..1847142	-	306	59802197	pyrB	NGO1877	-	aspartate carbamoyltransferase catalytic subunit
1725	 58.24	0	1847378..1848220	+	280	59802198	-	NGO1878	-	hypothetical protein
1726	 22.36	-2	1848738..1848974	+	78	59802199	-	NGO18781	-	hypothetical protein
1727	 39.59	-1	1849022..1849612	+	196	59802200	-	NGO1879	-	hypothetical protein
1728	 58.88	0	1849888..1850439	-	183	59802201	-	NGO1880	-	hypothetical protein
1729	 60.08	+1	1851528..1853000	+	490	59802202	-	NGO1881	-	PykA
1730	 52.48	0	1854669..1855091	-	140	59802203	-	NGO1886	-	hypothetical protein
1731	 52.00	0	1855269..1855418	-	49	59802204	-	NGO1887	-	hypothetical protein
1732	 53.03	0	1855436..1855633	-	65	59802205	-	NGO1888	-	hypothetical protein
1733	 58.51	0	1855643..1856659	-	338	59802206	-	NGO1889	-	hypothetical protein
1734	 53.25	0	1856758..1857972	-	404	59802207	-	NGO1890	-	GltS
1735	 54.96	0	1858225..1858506	-	93	59802208	-	NGO1891	-	hypothetical protein
1736	 36.31	-2	1859711..1860718	-	335	59802209	-	NGO1893	-	DamH
1737	 40.12	-1	1860711..1861712	-	333	59802210	-	NGO1894	-	putative 5-methylcytosine methyltransferase
1738	 59.37	+1	1861743..1864016	-	757	59802211	-	NGO1895	-	hypothetical protein
1739	 55.95	0	1864135..1865151	+	338	59802212	-	NGO1896	-	hypothetical protein
1740	 55.72	0	1865152..1866192	+	346	59802213	-	NGO1897	-	hypothetical protein
1741	 54.21	0	1866297..1867163	+	288	59802214	-	NGO1898	-	glucose-1-phosphate thymidylyltransferase
1742	 54.04	0	1867902..1869920	-	672	59802215	-	NGO1900	-	hypothetical protein
1743	 53.03	0	1870115..1871236	-	373	59802216	-	NGO1901	-	putative heat shock protein/chaperone DnaJ
1744	 58.50	0	1872224..1872517	-	97	59802217	-	NGO1902	-	ComE4
1745	 50.36	0	1878578..1878994	-	138	59802218	-	NGO1904	-	DskA
1746	 54.29	0	1879145..1879936	-	263	59802219	-	NGO1905	-	putative pyrroline-5-carboxylate reductase
1747	 51.96	0	1879985..1880392	-	135	59802220	-	NGO1906	-	hypothetical protein
1748	 58.08	0	1880392..1881078	-	228	59802221	-	NGO1907	-	hypothetical protein
1749	 57.76	0	1881198..1882241	+	347	59802222	-	NGO1908	-	twitching motility/pilus retraction protein
1750	 55.58	0	1882405..1883631	+	408	59802223	-	NGO1909	-	putative twitching motility - like protein
1751	 60.99	+1	1883748..1885898	+	716	59802224	-	NGO1910	-	hypothetical protein
1752	 40.00	-1	1886380..1886664	-	94	59802225	-	NGO1911	-	hypothetical protein
1753	 38.93	-2	1891120..1891512	+	130	59802226	-	NGO1913	-	hypothetical protein
1754	 55.35	0	1891592..1893040	+	482	59802227	-	NGO1914	-	6-phosphogluconate dehydrogenase
1755	 60.38	+1	1893103..1894374	+	423	59802228	-	NGO1915	-	3-deoxy-D-manno-octulosonic-acid transferase
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.