IslandPath Analysis: Mycobacterium tuberculosis F11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.47   STD DEV: 3.40
Mycobacterium tuberculosis F11, complete genome - 1..4424435
3941 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2560	 65.71	0	2887089..2889803	-	904	148823751	alaS	TBFG_12576	-	alanyl-tRNA synthetase
2561	 66.41	0	2889894..2890283	-	129	148823752	-	TBFG_12577	-	hypothetical protein
2562	 65.04	0	2890390..2891064	+	224	148823753	-	TBFG_12578	-	hypothetical protein
2563	 67.23	0	2891149..2891859	+	236	148823754	-	TBFG_12579	-	hypothetical protein
2564	 69.17	+1	2891889..2893247	-	452	148823755	-	TBFG_12580	-	recombination factor protein RarA
2565	 66.26	0	2893393..2894370	+	325	148823756	-	TBFG_12581	-	hypothetical protein
2566	 60.03	-1	2894727..2895464	+	245	148823757	-	TBFG_12582	-	hypothetical protein
2567	 64.67	0	2895607..2896656	+	349	148823758	-	TBFG_12583	-	glutamine ABC transporter membrane protein
2568	 65.76	0	2896659..2897651	+	330	148823759	-	TBFG_12584	-	glutamine-transport ATP-binding protein ABC transporter glnQ
2569	 64.61	0	2897928..2899679	+	583	148823760	-	TBFG_12585	-	hypothetical protein
2570	 69.24	+1	2899690..2903112	+	1140	148823761	-	TBFG_12586	-	hypothetical protein
2571	 66.18	0	2903112..2905766	+	884	148823762	-	TBFG_12587	-	hypothetical protein
2572	 63.06	0	2905763..2906788	-	341	148823763	-	TBFG_12588	-	hypothetical protein
2573	 65.19	0	2906781..2907725	-	314	148823764	-	TBFG_12589	-	hypothetical protein
2574	 67.18	0	2907829..2908218	+	129	148823765	-	TBFG_12590	-	hypothetical protein
2575	 66.85	0	2908210..2909277	-	355	148823766	-	TBFG_12591	-	hypothetical protein
2576	 67.50	0	2909330..2911120	-	596	148823767	aspS	TBFG_12592	-	aspartyl-tRNA synthetase
2577	 70.41	+1	2911273..2912100	+	275	148823768	-	TBFG_12593	-	2-dehydropantoate 2-reductase
2578	 65.48	0	2912123..2912626	+	167	148823769	-	TBFG_12594	-	hypothetical protein
2579	 65.76	0	2912656..2913537	+	293	148823770	-	TBFG_12595	-	glycine rich membrane protein
2580	 64.52	0	2913543..2914007	-	154	148823771	-	TBFG_12596	-	hypothetical protein
2581	 64.47	0	2914235..2915824	+	529	148823772	-	TBFG_12597	-	hypothetical protein
2582	 67.84	0	2915826..2916848	-	340	148823773	-	TBFG_12598	-	hypothetical protein
2583	 63.57	0	2916956..2917858	+	300	148823774	-	TBFG_12599	-	haloalkane dehalogenase
2584	 67.30	0	2918138..2919409	-	423	148823775	hisS	TBFG_12600	-	histidyl-tRNA synthetase
2585	 65.18	0	2919406..2920146	-	246	148823777	-	TBFG_12601	-	glyoxalase II (hydroxyacylglutathione hydrolase)
2586	 63.97	0	2920131..2921057	+	308	148823776	-	TBFG_12602	-	peptidyl-prolyl-cis-trans-isomerase B ppiB
2587	 65.19	0	2921143..2923515	-	790	148823778	-	TBFG_12603	-	GTP pyrophosphokinase relA
2588	 68.90	+1	2923546..2924217	-	223	148823779	-	TBFG_12604	-	adenine phosphoribosyltransferase
2589	 66.61	0	2924321..2925994	-	557	148823780	-	TBFG_12605	-	lipoprotein
2590	 65.84	0	2926000..2927328	-	442	148823781	secF	TBFG_12606	-	preprotein translocase subunit SecF
2591	 66.20	0	2927332..2929053	-	573	148823782	secD	TBFG_12607	-	preprotein translocase subunit SecD
2592	 60.92	-1	2929163..2929510	-	115	148823783	yajC	TBFG_12608	-	preprotein translocase subunit YajC
2593	 66.96	0	2929677..2931026	+	449	148823784	-	TBFG_12609	-	4-aminobutyrate aminotransferase
2594	 66.18	0	2931188..2934694	+	1168	148823785	-	TBFG_12610	-	fatty-acid-CoA ligase fadD9
2595	 73.04	+2	2934868..2936499	+	543	148823786	-	TBFG_12611	-	PE-PGRS family protein
2596	 69.86	+1	2936516..2937550	-	344	148823787	ruvB	TBFG_12612	-	Holliday junction DNA helicase B
2597	 69.20	+1	2937547..2938137	-	196	148823788	ruvA	TBFG_12613	-	Holliday junction DNA helicase motor protein
2598	 66.31	0	2938134..2938700	-	188	148823789	ruvC	TBFG_12614	-	Holliday junction resolvase
2599	 64.69	0	2939051..2939455	+	134	148823790	-	TBFG_12615	-	hypothetical protein
2600	 66.67	0	2939672..2940292	+	206	148823791	-	TBFG_12616	-	hypothetical protein
2601	 69.90	+1	2940303..2940797	+	164	148823792	-	TBFG_12617	-	hypothetical protein
2602	 63.89	0	2940794..2941225	+	143	148823793	-	TBFG_12618	-	hypothetical protein
2603	 65.67	0	2941307..2941708	+	133	148823794	-	TBFG_12619	-	integral membrane protein
2604	 69.02	+1	2941705..2943276	+	523	148823795	-	TBFG_12620	-	spermidine synthase
2605	 63.49	0	2943661..2944101	+	146	148823796	-	TBFG_12621	-	hypothetical protein
2606	 64.95	0	2944122..2944877	-	251	148823797	-	TBFG_12622	-	hypothetical protein
2607	 68.01	0	2945010..2945606	-	198	148823798	-	TBFG_12623	-	glutamine amidotransferase subunit PdxT
2608	 64.07	0	2945614..2946459	-	281	148823799	-	TBFG_12624	-	acyl-CoA thioesterase II tesB2
2609	 65.33	0	2946488..2947387	-	299	148823800	-	TBFG_12625	-	pyridoxine biosynthesis protein
2610	 63.41	0	2947515..2948189	+	224	148823801	-	TBFG_12626	-	pyridoxamine 5'-phosphate oxidase
2611	 65.23	0	2948363..2950105	+	580	148823802	-	TBFG_12627	-	PPE family protein
2612	 69.03	+1	2950127..2951182	-	351	148823803	-	TBFG_12628	-	hypothetical protein
2613	 66.23	0	2951182..2952318	-	378	148823804	-	TBFG_12629	-	alpha-mannosyltransferase pimA
2614	 68.03	0	2952329..2953279	-	316	148823805	-	TBFG_12630	-	lipid A biosynthesis lauroyl acyltransferase
2615	 67.58	0	2953276..2953929	-	217	148823806	-	TBFG_12631	-	phosphatidylinositol synthase pgsA1
2616	 63.78	0	2953926..2954513	-	195	148823807	-	TBFG_12632	-	hypothetical protein
2617	 66.04	0	2954506..2956584	-	692	148823808	thrS	TBFG_12633	-	threonyl-tRNA synthetase
2618	 73.38	+2	2956917..2958302	-	461	148823809	-	TBFG_12634	-	PE-PGRS family protein
2619	 68.66	0	2958647..2959147	+	166	148823810	-	TBFG_12635	-	hypothetical protein
2620	 62.81	0	2959164..2959604	-	146	148823811	-	TBFG_12636	-	hypothetical protein
2621	 69.55	+1	2959700..2960428	+	242	148823812	-	TBFG_12637	-	hypothetical protein
2622	 65.82	0	2960413..2960766	-	117	148823813	-	TBFG_12638	-	hypothetical protein
2623	 64.08	0	2960779..2961204	-	141	148823814	-	TBFG_12639	-	transmembrane protein
2624	 68.74	0	2961201..2961875	-	224	148823815	-	TBFG_12640	-	transcriptional regulator
2625	 67.76	0	2961953..2962774	+	273	148823816	-	TBFG_12641	-	methyltransferase
2626	 66.11	0	2962910..2963803	+	297	148823817	-	TBFG_12642	-	hypothetical protein
2627	 64.35	0	2963806..2964624	-	272	148823818	-	TBFG_12643	-	hypothetical protein
2628	 65.99	0	2964639..2965820	-	393	148823819	-	TBFG_12644	-	hypothetical protein
2629	 61.81	-1	2965879..2966310	-	143	148823820	-	TBFG_12645	-	hypothetical protein
2630	 62.08	0	2966824..2968065	-	413	148823821	-	TBFG_12646	-	hypothetical protein
2631	 63.64	0	2968375..2968737	+	120	148823822	-	TBFG_12647	-	hypothetical protein
2632	 64.09	0	2969084..2970208	+	374	148823823	-	TBFG_12648	-	hypothetical protein
2633	 65.00	0	2970210..2970749	+	179	148823824	-	TBFG_12649	-	hypothetical protein
2634	 65.67	0	2970889..2972187	+	432	148823825	-	TBFG_12650	-	hypothetical protein
2635	 60.64	-1	2972226..2972507	-	93	148823826	-	TBFG_12651	-	hypothetical protein
2636	 60.91	-1	2972652..2973137	-	161	148823827	-	TBFG_12652	-	hypothetical protein
2637	 74.31	+2	2973422..2975788	-	788	148823828	-	TBFG_12653	-	PE-PGRS family protein
2638	 63.42	0	2976030..2976707	+	225	148823829	-	TBFG_12654	-	hypothetical protein
2639	 67.43	0	2976903..2977559	+	218	148823830	-	TBFG_12655	-	transmembrane protein dedA
2640	 68.23	0	2977722..2978168	+	148	148823831	-	TBFG_12656	-	hypothetical protein
2641	 66.07	0	2978343..2978675	-	110	148823832	-	TBFG_12657	-	hypothetical protein
2642	 68.06	0	2978795..2979154	-	119	148823833	-	TBFG_12658	-	ArsR family transcriptional regulator
2643	 63.83	0	2979256..2979714	+	152	148823834	-	TBFG_12659	-	cadmium inducible protein cadI
2644	 67.72	0	2979850..2980230	+	126	148823835	-	TBFG_12660	-	ArsR family transcriptional regulator
2645	 65.93	0	2980227..2981723	+	498	148823836	-	TBFG_12661	-	arsenic-transport integral membrane protein arsC
2646	 62.65	0	2981727..2982149	+	140	148823837	-	TBFG_12662	-	hypothetical protein
2647	 71.99	+1	2983440..2983871	+	143	148823838	-	TBFG_12663	-	hypothetical protein
2648	 67.47	0	2983868..2984866	+	332	148823839	-	TBFG_12664	-	integrase
2649	 65.16	0	2984880..2985344	+	154	148823840	-	TBFG_12665	-	hypothetical protein
2650	 67.64	0	2985754..2987193	-	479	148823841	-	TBFG_12666	-	phiRv2 prophage protein
2651	 65.92	0	2987201..2987734	-	177	148823842	-	TBFG_12667	-	phiRv2 prophage protease
2652	 68.29	0	2987887..2988378	-	163	148823843	-	TBFG_12668	-	phiRv2 prophage protein
2653	 65.43	0	2988545..2988868	-	107	148823844	-	TBFG_12669	-	phiRv2 prophage protein
2654	 77.64	+2	2988948..2989193	-	81	148823845	-	TBFG_12670	-	phiRv2 prophage protein
2655	 66.74	0	2989190..2990617	-	475	148823846	-	TBFG_12671	-	phiRv2 prophage protein
2656	 71.76	+1	2990619..2991011	-	130	148823847	-	TBFG_12672	-	phiRv2 prophage protein
2657	 68.20	0	2991008..2991268	-	86	148823848	-	TBFG_12673	-	phiRv2 prophage protein
2658	 59.50	-1	2991285..2991647	-	120	148823849	-	TBFG_12674	-	phiRv2 prophage protein
2659	 64.89	0	2991650..2992777	-	375	148823850	-	TBFG_12675	-	phiRv2 prophage integrase
65.47	MEAN

3.40	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.