IslandPathversion 1.0

IslandPath Analysis: Methanosarcina mazei Go1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.57 STD DEV: 4.98
Methanosarcina mazei Go1, complete genome - 1..4096345
3370 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
80	 43.94	0	106128..107258	-	376	21226182	-	MM_0080	-	hypothetical protein
81	 48.68	+1	107742..109103	-	453	21226183	-	MM_0081	-	hypothetical protein
82	 47.31	0	109130..109408	-	92	21226184	-	MM_0082	-	hypothetical protein
83	 15.96	-2	109586..109798	-	70	21226185	-	MM_0083	-	hypothetical protein
84	 42.75	0	109844..110374	-	176	21226186	aroK	MM_0084	-	shikimate kinase
85	 39.62	0	110609..110974	-	121	21226187	-	MM_0085	-	hypothetical protein
86	 49.25	+1	111384..111917	-	177	21226188	-	MM_0086	-	tRNA 2'-O-methylase
87	 47.44	0	112009..113532	-	507	21226189	-	MM_0087	-	thymidine phosphorylase
88	 45.21	0	113888..114763	-	291	21226190	-	MM_0088	-	transporter
89	 38.16	-1	115136..115342	-	68	21226191	-	MM_0089	-	hypothetical protein
90	 39.92	0	115984..116226	-	80	21226192	-	MM_0090	-	hypothetical protein
91	 46.56	0	117271..118449	-	392	21226193	-	MM_0091	-	ABC transporter permease protein
92	 46.13	0	118499..119647	-	382	21226194	-	MM_0092	-	hypothetical protein
93	 46.80	0	120209..121708	+	499	21226195	-	MM_0093	-	cobyric acid synthase
94	 52.79	+1	122045..122599	-	184	21226196	-	MM_0094	-	hypothetical protein
95	 39.39	0	123133..123825	+	230	21226197	-	MM_0095	-	hypothetical protein
96	 35.62	-1	124395..125663	+	422	21226198	-	MM_0096	-	transposase
97	 49.15	+1	125736..126740	-	334	21226199	-	MM_0097	-	alanine dehydrogenase
98	 45.01	0	126929..127639	+	236	21226200	-	MM_0098	-	hypothetical protein
99	 49.51	+1	127683..128300	-	205	21226201	-	MM_0099	-	O-linked N-acetylglucosamine transferase
100	 44.36	0	128355..128735	-	126	21226202	-	MM_0100	-	hypothetical protein
101	 43.50	0	129028..129381	-	117	21226203	-	MM_0101	-	hypothetical protein
102	 42.94	0	129795..130616	+	273	21226204	-	MM_0102	-	Serine/threonine protein phosphatase
103	 47.22	0	130954..132141	-	395	21226205	-	MM_0103	-	O-linked N-acetylglucosamine transferase
104	 27.78	-2	132185..132454	-	89	21226206	-	MM_0104	-	hypothetical protein
105	 51.46	+1	133004..133174	-	56	21226207	-	MM_0105	-	hypothetical protein
106	 45.68	0	133816..134220	+	134	21226208	fxsA	MM_0106	-	FxsA
107	 46.72	0	134330..135046	-	238	21226209	-	MM_0107	-	hypothetical protein
108	 43.78	0	135048..135449	-	133	21226210	-	MM_0108	-	hypothetical protein
109	 46.54	0	135605..136876	+	423	21226211	-	MM_0109	-	cysteine desulfhydrase
110	 45.92	0	136866..137294	+	142	21226212	-	MM_0110	-	NifU protein
111	 44.72	0	137429..138403	+	324	21226213	-	MM_0111	-	ribosomal protein S6 modification protein
112	 45.60	0	138650..139024	+	124	21226214	-	MM_0112	-	peptidyl-tRNA hydrolase
113	 46.44	0	139146..140381	+	411	21226215	-	MM_0113	-	hypothetical protein
114	 46.47	0	140925..142241	+	438	21226216	truD	MM_0114	-	tRNA pseudouridine synthase D
115	 47.83	0	142500..143927	-	475	21226217	-	MM_0115	-	putative transmembrane efflux protein
116	 43.22	0	143890..144324	-	144	21226218	-	MM_0116	-	MarR family transcriptional regulator
117	 37.30	-1	144677..145180	-	167	21226219	-	MM_0117	-	hypothetical protein
118	 48.04	0	146550..148154	-	534	21226220	-	MM_0118	-	CTP synthetase
119	 44.31	0	148702..149466	-	254	21226221	-	MM_0119	-	hypothetical protein
120	 48.21	0	149475..149642	-	55	21226222	-	MM_0120	-	hypothetical protein
121	 50.34	+1	150337..152223	+	628	21226223	-	MM_0121	-	carbon monoxide dehydrogenase
122	 47.51	0	152239..152781	+	180	21226224	-	MM_0122	-	Iron-sulfur protein
123	 45.02	0	153174..153635	+	153	21226225	-	MM_0123	-	universal stress protein
124	 46.01	0	153778..154716	+	312	21226226	-	MM_0124	-	hypothetical protein
125	 47.87	0	155445..155891	+	148	21226227	-	MM_0125	-	universal stress protein
126	 47.06	0	156028..157338	-	436	21226228	-	MM_0126	-	PmbA protein
127	 46.90	0	157341..158696	-	451	21226229	-	MM_0127	-	Zinc metalloprotease
128	 49.18	+1	158684..160753	-	689	21226230	-	MM_0128	-	ATP-dependent protease Lon
129	 43.14	0	161203..161967	+	254	21226231	-	MM_0129	-	hypothetical protein
130	 46.84	0	161975..162211	-	78	21226232	-	MM_0130	-	hypothetical protein
131	 42.02	0	162643..163413	+	256	21226233	-	MM_0131	-	hypothetical protein
132	 42.65	0	164185..164592	+	135	21226234	-	MM_0132	-	hypothetical protein
133	 48.68	+1	164917..166167	+	416	21226235	-	MM_0133	-	threonine synthase
134	 46.89	0	166296..167453	+	385	21226236	-	MM_0134	-	sulfopyruvate decarboxylase alpha chain
135	 49.20	+1	167522..168838	-	438	21226237	-	MM_0135	-	ferredoxin oxidoreductase
136	 40.23	0	169165..169773	-	202	21226238	-	MM_0136	-	Zn-dependent hydrolase
137	 41.31	0	171646..171858	+	70	21226239	-	MM_0137	-	hypothetical protein
138	 40.79	0	172681..173136	-	151	21226240	-	MM_0138	-	hypothetical protein
139	 46.52	0	174138..175199	-	353	21226241	cycK	MM_0139	-	cytochrome c-type biogenesis protein
140	 46.87	0	175260..176249	-	329	21226242	-	MM_0140	-	putative cytochrome c biogenesis factors
141	 47.73	0	176529..177056	+	175	21226243	-	MM_0141	-	hypothetical protein
142	 47.52	0	177146..177709	+	187	21226244	-	MM_0142	-	orotate phosphoribosyltransferase
143	 44.23	0	177870..178181	-	103	21226245	-	MM_0143	-	4-carboxymuconolactone decarboxylase
144	 46.94	0	178642..179949	+	435	21226246	-	MM_0144	-	phosphoribosylamine--glycine ligase
145	 49.39	+1	180118..181026	+	302	161485684	-	MM_0145	-	ornithine carbamoyltransferase
146	 33.84	-1	182613..183398	+	261	21226248	-	MM_0146	-	transcriptional regulator
147	 38.96	0	183717..184427	+	236	21226249	-	MM_0147	-	iron-sulfur flavoprotein
148	 46.87	0	184446..185243	+	265	21226250	-	MM_0148	-	hypothetical protein
149	 37.09	-1	185332..185544	+	70	21226251	-	MM_0149	-	hypothetical protein
150	 44.14	0	185898..186767	+	289	21226252	-	MM_0150	-	putative nucleoside-diphosphate-sugar epimerase
151	 40.38	0	189183..191069	-	628	21226253	-	MM_0151	-	hypothetical protein
152	 39.14	0	191930..193066	-	378	21226254	-	MM_0152	-	DNA integration/recombination/invertion protein
153	 37.70	-1	193892..194464	+	190	21226255	-	MM_0153	-	hypothetical protein
154	 43.12	0	194588..198226	+	1212	21226256	-	MM_0154	-	hypothetical protein
155	 43.58	0	198317..200122	-	601	21226257	-	MM_0155	-	hypothetical protein
156	 40.94	0	200894..204391	+	1165	21226258	-	MM_0156	-	type IIS restriction enzyme
157	 48.57	+1	204707..205369	+	220	21226259	-	MM_0157	-	ATP-dependent DNA helicase
158	 44.00	0	205604..205978	+	124	21226260	-	MM_0158	-	ATP-dependent DNA helicase
159	 37.48	-1	206782..207456	+	224	21226261	-	MM_0159	-	hypothetical protein
160	 46.05	0	207711..207938	-	75	21226262	-	MM_0160	-	hypothetical protein
161	 45.56	0	208063..208152	-	29	21226263	-	MM_0161	-	hypothetical protein
162	 42.50	0	208431..209816	+	461	21226264	-	MM_0162	-	hypothetical protein
163	 39.66	0	210040..212742	+	900	21226265	rad2	MM_0163	-	DNA repair protein
164	 44.56	0	212816..214864	+	682	21226266	-	MM_0164	-	ATP-dependent protease La
165	 38.32	-1	215010..215330	-	106	21226267	-	MM_0165	-	hypothetical protein
166	 46.24	0	215609..217057	+	482	21226268	-	MM_0166	-	homospermidine synthase
167	 47.44	0	217859..218950	+	363	21226269	czcD	MM_0167	-	cobalt-zinc-cadmium resistance protein
168	 45.36	0	219154..223908	-	1584	21226270	-	MM_0168	-	sensory transduction histidine kinase
169	 44.78	0	223959..226247	-	762	21226271	-	MM_0169	-	sensory transduction histidine kinase
170	 37.73	-1	226258..226917	-	219	21226272	-	MM_0170	-	transposase
171	 38.19	-1	226923..227354	-	143	21226273	-	MM_0171	-	transposase
172	 44.92	0	227390..229150	-	586	21226274	-	MM_0172	-	sensory transduction histidine kinase
173	 42.79	0	230669..231271	+	200	21226275	-	MM_0173	-	transporter
174	 43.30	0	238003..238785	+	260	21226276	mtaC	MM_0174	-	methanol corrinoid protein
175	 48.88	+1	238799..240187	+	462	21226277	mtaB	MM_0175	-	methanol:corrinoid methyltransferase
176	 48.33	0	240526..241545	-	339	21226278	mtaA	MM_0176	-	methylcobalamin:coenzyme M methyltransferase
177	 43.44	0	242044..242607	+	187	21226279	-	MM_0177	-	hypothetical protein
178	 45.44	0	243509..248644	+	1711	21226280	-	MM_0178	-	hypothetical protein
179	 45.43	0	249399..249803	+	134	21226281	-	MM_0179	-	hypothetical protein
43.57	MEAN

4.98	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.