IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
590	 48.79	0	710456..711076	-	206	88601912	-	Mhun_0615	-	hypothetical protein
591	 48.43	0	711066..712529	-	487	88601913	-	Mhun_0616	-	TrkA-N
592	 48.72	0	713000..716125	+	1041	88601914	-	Mhun_0617	-	HEAT repeat-containing PBS lyase
593	 51.17	+1	716189..717085	+	298	88601915	-	Mhun_0618	-	aspartate carbamoyltransferase
594	 45.94	0	717082..717549	+	155	88601916	-	Mhun_0619	-	aspartate carbamoyltransferase regulatory subunit
595	 50.39	0	717520..718029	-	169	88601917	-	Mhun_0620	-	phosphopantetheine adenylyltransferase
596	 47.76	0	718254..718745	+	163	88601918	-	Mhun_0621	-	carbonic anhydrase
597	 48.28	0	718738..720015	+	425	88601919	-	Mhun_0622	-	4Fe-4S ferredoxin, iron-sulfur binding
598	 49.86	0	720012..721076	+	354	88601920	-	Mhun_0623	-	putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase
599	 44.73	0	721087..721779	+	230	88601921	-	Mhun_0624	-	hypothetical protein
600	 46.26	0	721782..722624	-	280	88601922	ubiA	Mhun_0625	-	prenyltransferase
601	 50.13	0	722783..723895	+	370	88601923	-	Mhun_0626	-	tRNA (guanine-N(2)-)-methyltransferase
602	 46.63	0	724494..725606	-	370	88601924	-	Mhun_0627	-	small GTP-binding protein domain-containing protein
603	 34.82	-2	725882..727492	+	536	88601925	-	Mhun_0628	-	transposase, IS4
604	 46.99	0	728875..729555	+	226	88601926	-	Mhun_0629	-	multimeric flavodoxin WrbA-like
605	 48.20	0	729645..731420	+	591	88601927	-	Mhun_0630	-	thiamine pyrophosphate enzyme-like TPP-binding
606	 39.37	-1	731519..731899	+	126	88601928	-	Mhun_0631	-	hypothetical protein
607	 43.50	0	731903..732148	+	81	88601929	-	Mhun_0632	-	hypothetical protein
608	 48.74	0	732260..734044	-	594	88601930	-	Mhun_0633	-	TrkA-C
609	 46.90	0	734133..734729	-	198	88601931	-	Mhun_0634	-	GPR1/FUN34/yaaH
610	 43.72	0	734895..735125	+	76	88601932	-	Mhun_0635	-	hypothetical protein
611	 48.61	0	735757..738552	+	931	88601933	-	Mhun_0636	-	ATPase, E1-E2 type
612	 47.12	0	738549..739208	+	219	88601934	-	Mhun_0637	-	TrkA-N
613	 48.67	0	739208..739885	+	225	88601935	-	Mhun_0638	-	TrkA-N
614	 42.90	0	739932..740579	+	215	88601936	-	Mhun_0639	-	exonuclease
615	 40.40	-1	740616..743288	-	890	88601937	-	Mhun_0640	-	multi-sensor signal transduction histidine kinase
616	 41.37	0	743285..744541	-	418	88601938	-	Mhun_0641	-	extracellular ligand-binding receptor
617	 40.22	-1	744787..745992	+	401	88601939	-	Mhun_0642	-	putative PAS/PAC sensor protein
618	 40.03	-1	746040..746786	-	248	88601940	-	Mhun_0643	-	hypothetical protein
619	 47.30	0	746842..750120	-	1092	88601941	-	Mhun_0644	-	periplasmic copper-binding
620	 46.91	0	750188..751336	-	382	88601942	-	Mhun_0645	-	major facilitator transporter
621	 44.44	0	751333..751818	-	161	88601943	-	Mhun_0646	-	MarR family transcriptional regulator
622	 50.70	0	751960..753249	-	429	88601944	-	Mhun_0647	-	bifunctional hexulose-6-phosphate synthase/ribonuclease regulator
623	 47.87	0	753411..755054	+	547	88601945	-	Mhun_0648	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
624	 44.44	0	755096..755617	-	173	88601946	-	Mhun_0649	-	nitroreductase
625	 43.91	0	755691..757241	-	516	88601947	-	Mhun_0650	-	hypothetical protein
626	 50.67	0	757319..758362	-	347	88601948	-	Mhun_0651	-	hypothetical protein
627	 47.17	0	758438..758914	+	158	88601949	-	Mhun_0652	-	peptide methionine sulfoxide reductase
628	 45.72	0	758916..759827	+	303	88601950	-	Mhun_0653	-	type I phosphodiesterase/nucleotide pyrophosphatase
629	 54.17	+1	759916..760227	-	103	88601951	rpl12p	Mhun_0654	-	50S ribosomal protein L12P
630	 48.41	0	760278..761126	-	282	88601952	rplP0	Mhun_0655	-	acidic ribosomal protein P0
631	 48.61	0	761126..761773	-	215	88601953	-	Mhun_0656	-	ribosomal protein L1
632	 50.52	0	761838..762314	-	158	88601954	-	Mhun_0657	-	ribosomal protein L11
633	 51.76	+1	762413..762895	-	160	88601955	-	Mhun_0658	-	NusG antitermination factor
634	 45.83	0	762901..763092	-	63	88601956	-	Mhun_0659	-	protein translocase SEC61 complex gamma subunit
635	 51.42	+1	763098..764186	-	362	88601957	-	Mhun_0660	-	cell division protein FtsZ
636	 48.31	0	764183..765511	-	442	88601958	-	Mhun_0661	-	hypothetical protein
637	 36.51	-1	765524..767257	-	577	88601959	-	Mhun_0662	-	transposase, IS4
638	 48.51	0	767558..768769	+	403	88601960	-	Mhun_0663	-	MoeA-likedomain-containing protein
639	 47.43	0	768766..770631	+	621	88601961	-	Mhun_0664	-	molybdopterin binding domain-containing protein
640	 44.33	0	770634..771242	-	202	88601962	-	Mhun_0665	-	hypothetical protein
641	 46.28	0	771224..772042	-	272	88601963	-	Mhun_0666	-	triphosphoribosyl-dephospho-CoA protein
642	 46.11	0	772039..773142	-	367	88601964	-	Mhun_0667	-	hypothetical protein
643	 45.27	0	773321..773722	+	133	88601965	-	Mhun_0668	-	sirohydrochlorin cobaltochelatase
644	 46.58	0	773722..774936	+	404	88601966	-	Mhun_0669	-	hypothetical protein
645	 49.30	0	774936..776000	+	354	88601967	-	Mhun_0670	-	hypothetical protein
646	 48.20	0	775997..777388	+	463	88601968	-	Mhun_0671	-	cobyrinic acid a,c-diamide synthase
647	 45.86	0	777444..778337	+	297	88601969	-	Mhun_0672	-	branched-chain amino acid aminotransferase
648	 43.49	0	778630..779328	+	232	88601970	-	Mhun_0673	-	beta-lactamase-like
649	 39.71	-1	779527..779871	+	114	88601971	-	Mhun_0674	-	hypothetical protein
650	 38.58	-1	779858..780391	+	177	88601972	-	Mhun_0675	-	hypothetical protein
651	 42.26	0	780391..780726	+	111	88601973	-	Mhun_0676	-	transcriptional modulator of MazE/toxin, MazF
652	 42.55	0	782235..782831	-	198	88601974	-	Mhun_0679	-	hypothetical protein
653	 44.57	0	782961..785078	+	705	88601975	-	Mhun_0680	-	sodium/hydrogen exchanger
654	 39.79	-1	785309..787414	-	701	88601976	-	Mhun_0681	-	methyl-accepting chemotaxis sensory transducer
655	 47.10	0	789194..790471	+	425	88601977	-	Mhun_0683	-	amino acid permease-associated region
656	 47.02	0	790707..791546	+	279	88601978	-	Mhun_0684	-	MerR family transcriptional regulator
657	 49.52	0	791480..793363	-	627	88601979	-	Mhun_0685	-	ferredoxin
658	 48.29	0	793399..794829	-	476	88601980	-	Mhun_0686	-	acetyl-CoA decarbonylase/synthase complex subunit gamma
659	 51.08	+1	794840..796090	-	416	88601981	-	Mhun_0687	-	acetyl-CoA decarbonylase/synthase complex subunit delta
660	 47.29	0	796083..797486	-	467	88601982	-	Mhun_0688	-	acetyl-CoA decarbonylase/synthase complex subunit beta
661	 47.40	0	797479..798054	-	191	88601983	-	Mhun_0689	-	CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit
662	 50.08	0	798051..800414	-	787	88601984	-	Mhun_0690	-	acetyl-CoA decarbonylase/synthase complex subunit alpha
663	 48.66	0	800485..801267	-	260	88601985	-	Mhun_0691	-	CODH nickel-insertion accessory protein
664	 48.97	0	801264..802043	-	259	88601986	-	Mhun_0692	-	cobyrinic acid a,c-diamide synthase
665	 39.96	-1	802358..802810	-	150	88601987	-	Mhun_0693	-	hypothetical protein
666	 41.85	0	803149..804264	-	371	88601988	-	Mhun_0694	-	ABC-type branched-chain amino acid transport systems periplasmic component-like
667	 41.47	0	804720..806120	-	466	88601989	-	Mhun_0695	-	glycoside hydrolase family protein
668	 41.33	0	806117..807004	-	295	88601990	-	Mhun_0696	-	hypothetical protein
669	 34.70	-2	807043..808653	-	536	88601991	-	Mhun_0697	-	transposase, IS4
670	 35.19	-2	808691..809068	-	125	88601992	-	Mhun_0698	-	hypothetical protein
671	 43.85	0	809187..809690	+	167	88601993	-	Mhun_0699	-	hypothetical protein
672	 34.97	-2	809787..811496	-	569	88601994	-	Mhun_0700	-	multi-sensor signal transduction histidine kinase
673	 46.52	0	811719..812825	+	368	88601995	-	Mhun_0701	-	aldo/keto reductase
674	 47.21	0	812878..813576	-	232	88601996	-	Mhun_0702	-	hypothetical protein
675	 52.24	+1	813786..814097	-	103	88601997	-	Mhun_0703	-	hypothetical protein
676	 50.05	0	814094..816031	-	645	88601998	-	Mhun_0704	-	hypothetical protein
677	 32.84	-2	816326..816931	-	201	88601999	-	Mhun_0705	-	hypothetical protein
678	 36.45	-1	816895..817311	-	138	88602000	-	Mhun_0706	-	hypothetical protein
679	 51.71	+1	817404..818279	-	291	88602001	-	Mhun_0707	-	hypothetical protein
680	 52.58	+1	818276..818566	-	96	88602002	-	Mhun_0708	-	hypothetical protein
681	 52.85	+1	818563..818895	-	110	88602003	-	Mhun_0709	-	hypothetical protein
682	 45.63	0	818885..819250	-	121	88602004	-	Mhun_0710	-	hypothetical protein
683	 45.30	0	819647..819880	-	77	88602005	-	Mhun_0711	-	YcfA-like
684	 39.27	-1	819873..820226	-	117	88602006	-	Mhun_0712	-	hypothetical protein
685	 44.02	0	820351..820584	+	77	88602007	-	Mhun_0713	-	hypothetical protein
686	 37.67	-1	820581..820880	+	99	88602008	-	Mhun_0714	-	hypothetical protein
687	 35.74	-1	821424..821672	-	82	88602009	-	Mhun_0715	-	hypothetical protein
688	 42.02	0	822066..822629	+	187	88602010	-	Mhun_0716	-	hypothetical protein
689	 42.53	0	823062..823235	-	57	88602011	-	Mhun_0717	-	hypothetical protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.