IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3038	 36.51	-1	3419191..3420924	-	577	88604360	-	Mhun_3134	-	transposase, IS4
3039	 37.74	-1	3422033..3422668	+	211	88604361	-	Mhun_3135	-	hypothetical protein
3040	 46.48	0	3423278..3424258	+	326	88604362	-	Mhun_3136	-	hypothetical protein
3041	 46.36	0	3424282..3425394	+	370	88604363	-	Mhun_3137	-	HEAT repeat-containing PBS lyase
3042	 35.89	-1	3425391..3427697	+	768	88604364	-	Mhun_3138	-	hypothetical protein
3043	 42.04	0	3427947..3428486	+	179	88604365	-	Mhun_3139	-	flagellin
3044	 42.30	0	3428590..3429102	+	170	88604366	-	Mhun_3140	-	flagellin
3045	 35.22	-2	3429461..3430414	-	317	88604367	-	Mhun_3141	-	tetratricopeptide TPR_2
3046	 35.65	-2	3430501..3432312	+	603	88604368	-	Mhun_3142	-	hypothetical protein
3047	 31.34	-2	3432427..3433077	-	216	88604369	-	Mhun_3143	-	hypothetical protein
3048	 31.62	-2	3433084..3433842	-	252	88604370	-	Mhun_3144	-	hypothetical protein
3049	 31.93	-2	3433839..3435122	-	427	88604371	-	Mhun_3145	-	glycosyl transferase, group 1
3050	 30.74	-2	3437099..3438526	+	475	88604372	-	Mhun_3147	-	polysaccharide biosynthesis protein
3051	 42.89	0	3440410..3442836	+	808	88604373	-	Mhun_3149	-	hypothetical protein
3052	 42.55	0	3443494..3445044	-	516	88604374	-	Mhun_3150	-	hypothetical protein
3053	 35.44	-2	3446545..3447207	+	220	88604375	-	Mhun_3152	-	hexapaptide repeat-containing transferase
3054	 37.02	-1	3447214..3448080	+	288	88604376	-	Mhun_3153	-	hexapaptide repeat-containing transferase
3055	 38.47	-1	3448073..3448831	-	252	88604377	-	Mhun_3154	-	hypothetical protein
3056	 39.73	-1	3448854..3449603	-	249	88604378	-	Mhun_3155	-	short-chain dehydrogenase/reductase SDR
3057	 43.44	0	3449600..3450895	-	431	88604379	-	Mhun_3156	-	acyl protein synthase/acyl-CoA reductase RfbN
3058	 43.88	0	3450885..3452003	-	372	88604380	-	Mhun_3157	-	acyl-protein synthetase, LuxE
3059	 40.33	-1	3451984..3453456	-	490	88604381	-	Mhun_3158	-	AMP-dependent synthetase and ligase
3060	 30.74	-2	3453460..3453690	-	76	88604382	-	Mhun_3159	-	acyl carrier protein
3061	 33.58	-2	3453690..3454100	-	136	88604383	-	Mhun_3160	-	phosphopantethiene-protein transferase domain-contain protein
3062	 42.38	0	3454133..3455083	-	316	88604384	-	Mhun_3161	-	glycosyl transferase family protein
3063	 39.62	-1	3455323..3455688	+	121	88604385	-	Mhun_3162	-	hypothetical protein
3064	 42.89	0	3455744..3457438	-	564	88604386	-	Mhun_3163	-	hypothetical protein
3065	 40.37	-1	3457644..3458297	+	217	88604387	-	Mhun_3164	-	acylphosphatase-like protein
3066	 46.40	0	3458324..3459877	-	517	88604388	-	Mhun_3165	-	hypothetical protein
3067	 49.86	0	3459975..3461426	+	483	88604389	-	Mhun_3166	-	putative PAS/PAC sensor protein
3068	 50.02	0	3461617..3463653	+	678	88604390	-	Mhun_3167	-	multi-sensor signal transduction histidine kinase
3069	 51.72	+1	3463682..3464671	-	329	88604391	-	Mhun_3168	-	type II secretion system protein
3070	 51.29	+1	3464674..3465564	-	296	88604392	-	Mhun_3169	-	type II secretion system protein
3071	 50.16	0	3465596..3467425	-	609	88604393	-	Mhun_3170	-	type II secretion system protein E
3072	 50.80	+1	3467602..3468225	+	207	88604394	-	Mhun_3171	-	hypothetical protein
3073	 48.39	0	3468227..3468598	-	123	88604395	-	Mhun_3172	-	hypothetical protein
3074	 53.26	+1	3468603..3469139	-	178	88604396	-	Mhun_3173	-	L-fuculose phosphate aldolase
3075	 49.62	0	3469143..3469793	-	216	88604397	-	Mhun_3174	-	NADPH-dependent F420 reductase
3076	 47.99	0	3469795..3470067	-	90	88604398	-	Mhun_3175	-	thioredoxin-related
3077	 50.10	0	3470120..3471574	-	484	88604399	secD	Mhun_3176	-	preprotein translocase subunit SecD
3078	 47.21	0	3471575..3472453	-	292	88604400	-	Mhun_3177	-	preprotein translocase subunit SecF
3079	 50.16	0	3472681..3472989	+	102	88604401	-	Mhun_3178	-	hypothetical protein
3080	 46.79	0	3473038..3473349	+	103	88604402	-	Mhun_3179	-	hypothetical protein
3081	 50.25	0	3473349..3473756	+	135	88604403	-	Mhun_3180	-	hypothetical protein
3082	 53.21	+1	3473766..3475199	+	477	88604404	-	Mhun_3181	-	hypothetical protein
3083	 54.70	+1	3475200..3475784	+	194	88604405	-	Mhun_3182	-	hypothetical protein
3084	 51.06	+1	3475816..3476238	+	140	88604406	-	Mhun_3183	-	hypothetical protein
3085	 50.97	+1	3476246..3477226	+	326	88604407	-	Mhun_3184	-	biotin--acetyl-CoA-carboxylase ligase
3086	 52.33	+1	3477228..3477764	+	178	88604408	-	Mhun_3185	-	BioY protein
3087	 52.36	+1	3477761..3478459	+	232	88604409	-	Mhun_3186	-	ABC transporter related
3088	 54.47	+1	3478456..3479160	+	234	88604410	-	Mhun_3187	-	ABC transporter related
3089	 52.10	+1	3479142..3479807	+	221	88604411	-	Mhun_3188	-	hypothetical protein
3090	 51.67	+1	3479839..3481572	+	577	88604412	-	Mhun_3189	-	pyruvate carboxylase subunit B
3091	 53.08	+1	3481569..3483047	+	492	88604413	-	Mhun_3190	-	pyruvate carboxylase subunit A
3092	 49.15	0	3483047..3483280	+	77	88604414	-	Mhun_3191	-	5-nitroimidazole antibiotic resistance protein
3093	 52.74	+1	3483277..3483513	+	78	88604415	-	Mhun_3192	-	hypothetical protein
3094	 48.38	0	3483493..3486402	-	969	88604416	-	Mhun_3193	-	putative PAS/PAC sensor protein
3095	 50.60	0	3486825..3487160	-	111	88604417	-	Mhun_3194	-	CutA1 divalent ion tolerance protein
3096	 50.96	+1	3487684..3488154	+	156	88604418	-	Mhun_3195	-	hypothetical protein
3097	 45.74	0	3488401..3489198	+	265	88604419	-	Mhun_3196	-	protein of unknown function Met10
3098	 39.51	-1	3489356..3490051	+	231	88604420	-	Mhun_3197	-	hypothetical protein
3099	 43.21	0	3490186..3490671	+	161	88604421	-	Mhun_3198	-	hypothetical protein
3100	 46.76	0	3490732..3492429	+	565	88604422	-	Mhun_3199	-	TPR repeat-containing protein
3101	 47.00	0	3492438..3494984	-	848	88604423	-	Mhun_3200	-	glycosyl transferase family protein
3102	 42.36	0	3494994..3495425	-	143	88604424	-	Mhun_3201	-	response regulator receiver domain-containing protein
3103	 44.81	0	3495446..3496621	-	391	88604425	-	Mhun_3202	-	response regulator receiver sensor signal transduction histidine kinase
3104	 41.21	0	3496682..3497785	+	367	88604426	-	Mhun_3203	-	hypothetical protein
3105	 49.59	0	3503423..3504037	-	204	88604427	-	Mhun_3204	-	chromosome segregation and condensation protein ScpA
3106	 48.12	0	3509623..3510312	+	229	88604428	-	Mhun_3205	-	cobalt transport protein CbiM
3107	 45.21	0	3510316..3510618	+	100	88604429	-	Mhun_3206	-	cobalt transport protein CbiN
3108	 43.33	0	3510632..3511411	+	259	88604430	-	Mhun_3207	-	cobalt ABC transporter CbiQ, permease subunit
3109	 49.71	0	3511424..3512620	+	398	88604431	-	Mhun_3208	-	cobalt transport protein ATP-binding subunit
3110	 45.63	0	3512668..3513228	+	186	88604432	-	Mhun_3209	-	precorrin-8W decarboxylase
3111	 49.02	0	3513229..3513840	+	203	88604433	-	Mhun_3210	-	cobalt-precorrin-2 C(20)-methyltransferase
3112	 50.77	0	3513837..3514553	+	238	88604434	-	Mhun_3211	-	precorrin-4 C11-methyltransferase
3113	 51.89	+1	3514550..3515422	+	290	88604435	-	Mhun_3212	-	cobalamin biosynthesis protein CbiG
3114	 51.81	+1	3515397..3516197	+	266	88604436	-	Mhun_3213	-	precorrin-3B C17-methyltransferase
3115	 52.99	+1	3516187..3516822	+	211	88604437	-	Mhun_3214	-	precorrin-8X methylmutase CbiC/CobH
3116	 52.28	+1	3516824..3517831	+	335	88604438	cbiD	Mhun_3215	-	cobalt-precorrin-6A synthase
3117	 48.63	0	3517828..3518409	+	193	88604439	-	Mhun_3216	-	cobalt-precorrin-6Y C(5)-methyltransferase
3118	 45.03	0	3518835..3520364	+	509	88604440	-	Mhun_3217	-	hypothetical protein
3119	 49.60	0	3520458..3521324	-	288	88604441	-	Mhun_3218	-	HhH-GPD
3120	 42.35	0	3522112..3522366	+	84	88604442	-	Mhun_3219	-	hypothetical protein
3121	 50.27	0	3522778..3523716	+	312	88604443	-	Mhun_3220	-	radical SAM family protein
3122	 50.41	0	3523711..3525057	-	448	88604444	-	Mhun_3221	-	deoxyribodipyrimidine photolyase
3123	 40.14	-1	3525150..3525443	+	97	88604445	-	Mhun_3222	-	hypothetical protein
3124	 32.34	-2	3525732..3525932	-	66	88604446	-	Mhun_3223	-	hypothetical protein
3125	 37.86	-1	3525929..3526171	-	80	88604447	-	Mhun_3224	-	hypothetical protein
3126	 52.94	+1	3526239..3528038	-	599	88604448	-	Mhun_3225	-	DNA mismatch repair protein MutL
3127	 53.27	+1	3528035..3530713	-	892	88604449	-	Mhun_3226	-	DNA mismatch repair protein
3128	 53.19	+1	3530843..3531844	+	333	88604450	argC	Mhun_3227	-	N-acetyl-gamma-glutamyl-phosphate reductase
3129	 48.85	0	3531855..3532331	+	158	88604451	-	Mhun_3228	-	XRE family transcriptional regulator
3130	 54.78	+1	3532324..3533484	+	386	88604452	-	Mhun_3229	-	arginine biosynthesis bifunctional protein ArgJ
3131	 53.56	+1	3533481..3534365	+	294	88604453	-	Mhun_3230	-	acetylglutamate kinase
3132	 48.25	0	3534416..3535555	+	379	88604454	-	Mhun_3231	-	cytochrome c biogenesis protein, transmembrane region
3133	 47.16	0	3535557..3535838	-	93	88604455	-	Mhun_3232	-	chorismate mutase
3134	 45.13	0	3536103..3536492	+	129	88604456	-	Mhun_3233	-	putative lipoprotein
3135	 47.42	0	3536893..3538788	-	631	88604457	-	Mhun_3234	-	serine phosphatase
3136	 49.32	0	3538798..3540111	-	437	88604458	-	Mhun_3235	-	anti-sigma-factor antagonist domain-containing protein
3137	 48.51	0	3540205..3541443	+	412	88604459	-	Mhun_3236	-	putative transcriptional regulator
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.