IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2632	 40.61	-1	2989284..2989613	+	109	88603954	-	Mhun_2718	-	DNA polymerase, beta-like region
2633	 48.38	0	2990360..2992120	-	586	88603955	-	Mhun_2719	-	periplasmic sensor signal transduction histidine kinase
2634	 37.57	-1	2992276..2992464	+	62	88603956	-	Mhun_2720	-	hypothetical protein
2635	 39.72	-1	2992561..2992842	+	93	88603957	-	Mhun_2721	-	DNA polymerase, beta-like region
2636	 43.49	0	2992839..2993291	+	150	88603958	-	Mhun_2722	-	hypothetical protein
2637	 43.82	0	2993326..2993802	-	158	88603959	-	Mhun_2723	-	hypothetical protein
2638	 49.14	0	2993842..2995587	+	581	88603960	-	Mhun_2724	-	5'-nucleotidase-like
2639	 50.56	0	2995624..2998989	-	1121	88603961	-	Mhun_2725	-	protein kinase/helix-hairpin-helix DNA-binding domain-containing proteins
2640	 55.34	+1	2998989..2999765	-	258	88603962	-	Mhun_2726	-	hypothetical protein
2641	 53.13	+1	2999771..3000472	-	233	88603963	-	Mhun_2727	-	von Willebrand factor, type A
2642	 50.37	0	3000472..3001017	+	181	88603964	-	Mhun_2728	-	hydrogenase maturation protease HycI
2643	 44.29	0	3001061..3001480	+	139	88603965	-	Mhun_2729	-	hypothetical protein
2644	 53.15	+1	3001489..3003744	-	751	88603966	-	Mhun_2730	-	DEAD/DEAH box helicase-like
2645	 52.85	+1	3003722..3004807	-	361	88603967	-	Mhun_2731	-	hypothetical protein
2646	 50.16	0	3004874..3005503	-	209	88603968	-	Mhun_2732	-	NADPH-dependent FMN reductase
2647	 49.11	0	3005500..3006114	-	204	88603969	-	Mhun_2733	-	NADPH-dependent FMN reductase
2648	 49.24	0	3006124..3006783	-	219	88603970	-	Mhun_2734	-	peroxidase
2649	 47.49	0	3006790..3007128	-	112	88603971	-	Mhun_2735	-	alkylhydroperoxidase AhpD core
2650	 46.03	0	3007134..3007259	-	41	88603972	-	Mhun_2736	-	desulfoferrodoxin FeS4 iron-binding domain-containing protein
2651	 47.81	0	3007329..3007556	-	75	88603973	-	Mhun_2737	-	hypothetical protein
2652	 46.33	0	3007713..3008312	+	199	88603974	-	Mhun_2738	-	NADPH-dependent FMN reductase
2653	 49.56	0	3008313..3008990	-	225	88603975	-	Mhun_2739	-	DNA repair protein RadC
2654	 47.70	0	3009064..3009585	+	173	88603976	-	Mhun_2740	-	rubrerythrin
2655	 46.84	0	3009698..3011170	+	490	88603977	-	Mhun_2741	-	putative PAS/PAC sensor protein
2656	 46.72	0	3011275..3011640	-	121	88603978	-	Mhun_2742	-	HEAT repeat-containing PBS lyase
2657	 47.06	0	3012018..3012425	+	135	88603979	-	Mhun_2743	-	hypothetical protein
2658	 44.26	0	3012674..3013039	-	121	88603980	-	Mhun_2744	-	HEAT repeat-containing PBS lyase
2659	 45.89	0	3013550..3013963	+	137	88603981	-	Mhun_2745	-	hypothetical protein
2660	 45.74	0	3014307..3014717	+	136	88603982	-	Mhun_2746	-	hypothetical protein
2661	 46.89	0	3014842..3015726	+	294	88603983	-	Mhun_2747	-	hypothetical protein
2662	 47.93	0	3015956..3016366	+	136	88603984	-	Mhun_2748	-	hypothetical protein
2663	 47.67	0	3016562..3017872	+	436	88603985	-	Mhun_2749	-	response regulator receiver domain-containing protein
2664	 47.21	0	3018151..3020802	+	883	88603986	-	Mhun_2750	-	putative PAS/PAC sensor protein
2665	 40.56	-1	3020855..3021103	-	82	88603987	-	Mhun_2751	-	hypothetical protein
2666	 42.89	0	3021178..3021585	-	135	88603988	-	Mhun_2752	-	hemerythrin-like, metal-binding
2667	 51.05	+1	3021654..3022178	-	174	88603989	-	Mhun_2753	-	GCN5-related N-acetyltransferase
2668	 48.12	0	3022406..3023338	+	310	88603990	-	Mhun_2754	-	hypothetical protein
2669	 48.65	0	3023348..3024052	-	234	88603991	-	Mhun_2755	-	TPR repeat-containing protein
2670	 45.78	0	3024123..3024572	-	149	88603992	-	Mhun_2756	-	GCN5-related N-acetyltransferase
2671	 41.50	0	3024674..3024967	+	97	88603993	-	Mhun_2757	-	hypothetical protein
2672	 51.07	+1	3025033..3026673	+	546	88603994	-	Mhun_2758	-	hypothetical protein
2673	 53.75	+1	3026791..3029469	+	892	88603995	-	Mhun_2759	-	hypothetical protein
2674	 48.56	0	3029739..3031439	+	566	88603996	-	Mhun_2760	-	tetratricopeptide TPR_2
2675	 51.41	+1	3031590..3033038	+	482	88603997	-	Mhun_2761	-	hypothetical protein
2676	 51.43	+1	3033126..3034628	+	500	88603998	-	Mhun_2762	-	PKD
2677	 48.79	0	3034686..3035636	+	316	88603999	-	Mhun_2763	-	hypothetical protein
2678	 51.00	+1	3035640..3036488	+	282	88604000	-	Mhun_2764	-	hypothetical protein
2679	 48.59	0	3036530..3037735	+	401	88604001	-	Mhun_2765	-	amino acid ABC transporter periplasmic protein
2680	 48.57	0	3037737..3038366	-	209	88604002	-	Mhun_2766	-	V-type ATPase, D subunit
2681	 49.91	0	3038368..3039483	-	371	88604003	-	Mhun_2767	-	V-type ATP synthase subunit C
2682	 51.49	+1	3039578..3040348	+	256	88604004	-	Mhun_2768	-	protein serine/threonine phosphatases
2683	 50.95	+1	3040354..3040881	-	175	88604005	-	Mhun_2769	-	hypothetical protein
2684	 41.38	0	3040946..3041206	-	86	88604006	-	Mhun_2770	-	hypothetical protein
2685	 40.61	-1	3041559..3042437	+	292	88604007	-	Mhun_2771	-	Ion transport protein
2686	 47.29	0	3042925..3043698	+	257	88604008	-	Mhun_2772	-	beta-lactamase-like
2687	 46.12	0	3043700..3043918	+	72	88604009	-	Mhun_2773	-	hypothetical protein
2688	 51.62	+1	3044139..3044816	+	225	88604010	-	Mhun_2774	-	extracellular solute-binding protein
2689	 44.05	0	3044895..3045827	+	310	88604011	-	Mhun_2775	-	ATP-binding region, ATPase-like
2690	 44.03	0	3046122..3046439	+	105	88604012	-	Mhun_2776	-	hypothetical protein
2691	 51.46	+1	3046447..3047577	-	376	88604013	-	Mhun_2777	-	hypothetical protein
2692	 41.55	0	3047859..3048077	+	72	88604014	-	Mhun_2778	-	hypothetical protein
2693	 40.26	-1	3048083..3048313	+	76	88604015	-	Mhun_2779	-	YcfA-like
2694	 39.20	-1	3048413..3050032	-	539	88604016	-	Mhun_2780	-	hypothetical protein
2695	 49.41	0	3050056..3053184	-	1042	88604017	-	Mhun_2781	-	HsdR family type I site-specific deoxyribonuclease
2696	 50.42	0	3053190..3054605	-	471	88604018	-	Mhun_2782	-	putative transcriptional regulator
2697	 43.25	0	3056143..3057615	+	490	88604019	-	Mhun_2784	-	RNA-directed DNA polymerase
2698	 34.15	-2	3057692..3058057	-	121	88604020	-	Mhun_2785	-	type I restriction enzyme EcoR124II specificity protein
2699	 31.23	-2	3058061..3058774	-	237	88604021	-	Mhun_2786	-	hypothetical protein
2700	 47.98	0	3058767..3059879	-	370	88604022	-	Mhun_2787	-	hypothetical protein
2701	 47.30	0	3059880..3060989	-	369	88604023	-	Mhun_2788	-	hypothetical protein
2702	 52.35	+1	3060986..3062584	-	532	88604024	-	Mhun_2789	-	N-6 DNA methylase
2703	 46.20	0	3062622..3063095	+	157	88604025	-	Mhun_2790	-	hypothetical protein
2704	 34.43	-2	3063432..3064163	-	243	88604026	-	Mhun_2791	-	TPR repeat-containing protein
2705	 37.24	-1	3064356..3065993	-	545	88604027	-	Mhun_2792	-	transposase
2706	 45.88	0	3066165..3066977	-	270	88604028	-	Mhun_2793	-	DNA polymerase, beta-like region
2707	 49.34	0	3067005..3067835	-	276	88604029	-	Mhun_2794	-	hypothetical protein
2708	 53.37	+1	3068473..3068991	+	172	88604030	-	Mhun_2795	-	hypothetical protein
2709	 51.70	+1	3068986..3069513	-	175	88604031	-	Mhun_2796	-	metal dependent phosphohydrolase
2710	 42.91	0	3069506..3070027	-	173	88604032	-	Mhun_2797	-	transcription factor TFIIE, alpha subunit
2711	 54.50	+1	3070027..3071127	-	366	88604033	-	Mhun_2798	-	hypothetical protein
2712	 53.68	+1	3071100..3071615	-	171	88604034	-	Mhun_2799	-	hypothetical protein
2713	 48.11	0	3071612..3071929	-	105	88604035	-	Mhun_2800	-	hypothetical protein
2714	 52.80	+1	3072008..3072757	+	249	88604036	-	Mhun_2801	-	hypothetical protein
2715	 50.37	0	3072819..3073223	+	134	88604037	-	Mhun_2802	-	hypothetical protein
2716	 51.75	+1	3073228..3075198	-	656	88604038	-	Mhun_2803	-	sodium/hydrogen exchanger
2717	 53.75	+1	3075267..3076187	+	306	88604039	-	Mhun_2804	-	ROK
2718	 49.19	0	3076236..3078158	+	640	88604040	-	Mhun_2805	-	clostripain
2719	 50.46	0	3078313..3079392	+	359	88604041	-	Mhun_2806	-	clostripain
2720	 49.45	0	3079376..3081106	-	576	88604042	-	Mhun_2807	-	tetratricopeptide TPR_2
2721	 50.47	0	3081152..3082534	-	460	88604043	-	Mhun_2808	-	tRNA adenylyltransferase
2722	 51.63	+1	3082531..3083082	-	183	88604044	-	Mhun_2809	-	2',5' RNA ligase
2723	 48.63	0	3083214..3083468	+	84	88604045	-	Mhun_2810	-	glutaredoxin-like protein
2724	 51.66	+1	3083477..3085675	+	732	88604046	-	Mhun_2811	-	ribonucleoside-triphosphate reductase, anaerobic
2725	 48.10	0	3085811..3086311	-	166	88604047	-	Mhun_2812	-	hypothetical protein
2726	 49.73	0	3086439..3087938	+	499	88604048	-	Mhun_2813	-	beta-lactamase
2727	 49.52	0	3088035..3088664	+	209	88604049	-	Mhun_2814	-	UbiE/COQ5 methyltransferase
2728	 41.28	0	3091255..3092097	+	280	88604050	-	Mhun_2816	-	hypothetical protein
2729	 43.05	0	3092091..3092759	+	222	88604051	-	Mhun_2817	-	hypothetical protein
2730	 39.71	-1	3093287..3094807	-	506	88604052	-	Mhun_2819	-	transposase IS66
2731	 35.76	-1	3094797..3094961	-	54	88604053	-	Mhun_2820	-	transposon-encoded protein
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.