IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2438	 47.51	0	2799726..2800649	-	307	88603760	-	Mhun_2519	-	hypothetical protein
2439	 45.40	0	2800694..2801008	+	104	88603761	-	Mhun_2520	-	hypothetical protein
2440	 49.10	0	2801016..2802017	+	333	88603762	-	Mhun_2521	-	flap endonuclease-1
2441	 47.42	0	2802076..2804673	+	865	88603763	-	Mhun_2522	-	PKD
2442	 49.66	0	2804668..2805261	-	197	88603764	-	Mhun_2523	-	CDP-alcohol phosphatidyltransferase
2443	 47.37	0	2805258..2805770	-	170	88603765	-	Mhun_2524	-	hypothetical protein
2444	 48.00	0	2805767..2806843	-	358	88603766	-	Mhun_2525	-	histidinol-phosphate aminotransferase
2445	 53.13	+1	2806818..2807888	-	356	88603767	-	Mhun_2526	-	acetylornithine and succinylornithine aminotransferases
2446	 51.96	+1	2807977..2808894	-	305	88603768	-	Mhun_2527	-	GMP synthase subunit B
2447	 50.69	0	2808894..2810477	-	527	88603769	-	Mhun_2528	-	CTP synthetase
2448	 49.78	0	2810524..2810973	-	149	88603770	-	Mhun_2529	-	phenylacetic acid degradation-related protein
2449	 45.69	0	2811056..2811751	+	231	88603771	-	Mhun_2530	-	glycosyl transferase family protein
2450	 52.60	+1	2811776..2813104	-	442	88603772	-	Mhun_2531	-	histidinol dehydrogenase
2451	 46.52	0	2813107..2813637	-	176	88603773	-	Mhun_2532	-	CheW protein
2452	 45.39	0	2813800..2814396	+	198	88603774	-	Mhun_2533	-	CheW protein
2453	 44.01	0	2814401..2815327	-	308	88603775	-	Mhun_2534	-	hypothetical protein
2454	 48.61	0	2815389..2815964	-	191	88603776	-	Mhun_2535	-	NADPH-dependent FMN reductase
2455	 48.33	0	2816026..2816652	-	208	88603777	-	Mhun_2536	-	peptidase M50
2456	 33.77	-2	2817703..2818155	+	150	88603778	-	Mhun_2538	-	hypothetical protein
2457	 36.51	-1	2818214..2819947	+	577	88603779	-	Mhun_2539	-	transposase, IS4
2458	 44.55	0	2819992..2820303	+	103	88603780	-	Mhun_2540	-	hypothetical protein
2459	 47.40	0	2820346..2820921	-	191	88603781	-	Mhun_2541	-	hypothetical protein
2460	 48.47	0	2820914..2822743	-	609	88603782	-	Mhun_2542	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2461	 47.26	0	2822833..2823744	-	303	88603783	-	Mhun_2543	-	hypothetical protein
2462	 49.04	0	2823741..2824103	-	120	88603784	-	Mhun_2544	-	oxygen-sensitive ribonucleoside-triphosphate reductase-like
2463	 52.21	+1	2824120..2824797	-	225	88603785	-	Mhun_2545	-	orotidine 5'-phosphate decarboxylase
2464	 48.75	0	2824798..2825718	-	306	88603786	-	Mhun_2546	-	putative deoxyhypusine synthase
2465	 50.70	0	2825788..2827065	-	425	88603787	-	Mhun_2547	-	nucleic acid binding, OB-fold, tRNA/helicase-type
2466	 48.75	0	2827193..2828113	+	306	88603788	-	Mhun_2548	-	XRE family transcriptional regulator
2467	 51.12	+1	2828167..2829825	+	552	88603789	-	Mhun_2549	-	thermosome
2468	 42.75	0	2829871..2830380	-	169	88603790	-	Mhun_2550	-	CheW protein
2469	 47.00	0	2830998..2833295	+	765	88603791	-	Mhun_2551	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
2470	 48.23	0	2833296..2834228	-	310	88603792	-	Mhun_2552	-	Allergen V5/Tpx-1 related
2471	 48.17	0	2834291..2834755	-	154	88603793	-	Mhun_2553	-	ribosomal-protein-alanine acetyltransferase
2472	 49.05	0	2834828..2836087	+	419	88603794	-	Mhun_2554	-	hypothetical protein
2473	 46.52	0	2836104..2837066	-	320	88603795	-	Mhun_2555	-	hypothetical protein
2474	 50.65	0	2837150..2838148	-	332	88603796	-	Mhun_2556	-	hypothetical protein
2475	 51.05	+1	2838284..2839237	-	317	88603797	-	Mhun_2557	-	hypothetical protein
2476	 53.92	+1	2839413..2840165	-	250	88603798	-	Mhun_2558	-	uroporphyrin-III C-methyltransferase
2477	 54.73	+1	2840158..2841045	-	295	88603799	-	Mhun_2559	-	porphobilinogen deaminase
2478	 53.35	+1	2841030..2842283	-	417	88603800	-	Mhun_2560	-	glutamate-1-semialdehyde-2,1-aminomutase
2479	 54.35	+1	2842276..2843241	-	321	88603801	-	Mhun_2561	-	delta-aminolevulinic acid dehydratase
2480	 54.12	+1	2843238..2844512	-	424	88603802	-	Mhun_2562	-	shikimate/quinate 5-dehydrogenase
2481	 51.85	+1	2844509..2845129	-	206	88603803	-	Mhun_2563	-	siroheme synthase
2482	 44.89	0	2846151..2846375	+	74	88603804	-	Mhun_2564	-	hypothetical protein
2483	 41.44	0	2847578..2847910	-	110	88603805	-	Mhun_2566	-	hypothetical protein
2484	 45.27	0	2847895..2848137	-	80	88603806	-	Mhun_2567	-	hypothetical protein
2485	 42.11	0	2848567..2849079	-	170	88603807	-	Mhun_2568	-	hypothetical protein
2486	 34.88	-2	2850240..2850497	+	85	88603808	-	Mhun_2569	-	plasmid stabilization system protein
2487	 40.74	-1	2851064..2851306	+	80	88603809	-	Mhun_2570	-	hypothetical protein
2488	 49.04	0	2851954..2852526	-	190	88603810	-	Mhun_2572	-	hypothetical protein
2489	 51.07	+1	2852655..2853122	+	155	88603811	-	Mhun_2573	-	hypothetical protein
2490	 47.99	0	2853110..2853382	+	90	88603812	-	Mhun_2574	-	hypothetical protein
2491	 51.62	+1	2853392..2854069	+	225	88603813	-	Mhun_2575	-	hypothetical protein
2492	 44.72	0	2854182..2854550	+	122	88603814	-	Mhun_2576	-	response regulator receiver domain-containing protein
2493	 47.36	0	2854554..2855159	-	201	88603815	-	Mhun_2577	-	imidazole glycerol phosphate synthase subunit HisH
2494	 50.25	0	2855156..2856556	-	466	88603816	-	Mhun_2578	-	hypothetical protein
2495	 44.89	0	2856774..2857301	+	175	88603817	-	Mhun_2579	-	cation antiporter
2496	 50.39	0	2857298..2857555	+	85	88603818	-	Mhun_2580	-	putative monovalent cation/H+ antiporter subunit F
2497	 49.58	0	2857555..2857911	+	118	88603819	-	Mhun_2581	-	putative monovalent cation/H+ antiporter subunit G
2498	 46.75	0	2857908..2858153	+	81	88603820	-	Mhun_2582	-	hypothetical protein
2499	 45.61	0	2858153..2858437	+	94	88603821	-	Mhun_2583	-	membrane bound hydrogenase, MbhE subunit
2500	 46.04	0	2858430..2858909	+	159	88603822	-	Mhun_2584	-	putative monovalent cation/H+ antiporter subunit B
2501	 48.99	0	2858906..2859250	+	114	88603823	-	Mhun_2585	-	NADH-ubiquinone oxidoreductase, chain 4L
2502	 51.43	+1	2859254..2860822	+	522	88603824	-	Mhun_2586	-	putative monovalent cation/H+ antiporter subunit D
2503	 47.99	0	2860823..2861170	+	115	88603825	-	Mhun_2587	-	membrane bound hydrogenase, MbhI subunit
2504	 51.14	+1	2861167..2861604	+	145	88603826	-	Mhun_2588	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2505	 52.61	+1	2861601..2862233	+	210	88603827	-	Mhun_2589	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
2506	 50.16	0	2862230..2863459	+	409	88603828	-	Mhun_2590	-	NADH dehydrogenase (ubiquinone)
2507	 53.97	+1	2863456..2864487	+	343	88603829	-	Mhun_2591	-	respiratory-chain NADH dehydrogenase, subunit 1
2508	 47.16	0	2864484..2864888	+	134	88603830	-	Mhun_2592	-	NADH-plastoquinone oxidoreductase subunit
2509	 49.09	0	2864906..2866282	-	458	88603831	-	Mhun_2593	-	nicotinate phosphoribosyltransferase related
2510	 49.00	0	2866437..2867087	+	216	88603832	-	Mhun_2594	-	transglutaminase-like
2511	 45.62	0	2867096..2867575	-	159	88603833	-	Mhun_2595	-	hypothetical protein
2512	 44.21	0	2867575..2869284	-	569	88603834	-	Mhun_2596	-	putative PAS/PAC sensor protein
2513	 46.18	0	2869372..2869869	+	165	88603835	-	Mhun_2597	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2514	 51.11	+1	2869866..2870810	-	314	88603836	-	Mhun_2598	-	hypothetical protein
2515	 49.93	0	2870873..2871619	+	248	88603837	-	Mhun_2599	-	hypothetical protein
2516	 47.94	0	2871673..2872377	+	234	88603838	-	Mhun_2600	-	putative glucose-6-phosphate isomerase
2517	 48.51	0	2872362..2873099	-	245	88603839	-	Mhun_2601	-	NAD+ synthetase
2518	 50.77	0	2873143..2873859	-	238	88603840	-	Mhun_2602	-	hypothetical protein
2519	 48.90	0	2874004..2874864	+	286	88603841	-	Mhun_2603	-	protein of unknown function RIO1
2520	 50.13	0	2874858..2876798	+	646	88603842	-	Mhun_2604	-	hypothetical protein
2521	 52.03	+1	2876801..2877661	+	286	88603843	-	Mhun_2605	-	thiamine-monophosphate kinase
2522	 43.79	0	2877649..2879580	-	643	88603844	-	Mhun_2606	-	tetratricopeptide TPR_2
2523	 47.32	0	2879600..2880307	-	235	88603845	-	Mhun_2607	-	PKD
2524	 45.01	0	2880304..2880714	-	136	88603846	-	Mhun_2608	-	hypothetical protein
2525	 47.58	0	2880772..2881599	-	275	88603847	-	Mhun_2609	-	hypothetical protein
2526	 51.07	+1	2882012..2884300	+	762	88603848	-	Mhun_2610	-	phosphoenolpyruvate synthase
2527	 50.90	+1	2884290..2885399	+	369	88603849	-	Mhun_2611	-	L-tyrosine decarboxylase
2528	 47.18	0	2885380..2885928	+	182	88603850	-	Mhun_2612	-	adenine phosphoribosyltransferase
2529	 53.04	+1	2885966..2886853	+	295	88603851	-	Mhun_2613	-	diphthamide biosynthesis protein
2530	 52.55	+1	2886850..2887458	+	202	88603852	-	Mhun_2614	-	methyltransferase small
2531	 52.83	+1	2887776..2888216	-	146	88603853	-	Mhun_2615	-	hypothetical protein
2532	 50.00	0	2888248..2888829	+	193	88603854	-	Mhun_2616	-	hypothetical protein
2533	 47.09	0	2888836..2889540	-	234	88603855	-	Mhun_2617	-	hypothetical protein
2534	 51.45	+1	2889664..2890491	+	275	88603856	-	Mhun_2618	-	CBS
2535	 51.03	+1	2890464..2891627	-	387	88603857	-	Mhun_2619	-	nucleotidyl transferase
2536	 49.22	0	2891711..2892031	-	106	88603858	-	Mhun_2620	-	hypothetical protein
2537	 51.37	+1	2892076..2893245	-	389	88603859	-	Mhun_2621	-	translation-associated GTPase
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.