IslandPathversion 1.0

IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.77 STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2267	 48.84	0	2598888..2599145	-	85	88603589	-	Mhun_2344	-	translation elongation factor aEF-1 beta
2268	 54.23	+1	2599150..2599350	-	66	88603590	-	Mhun_2345	-	hypothetical protein
2269	 50.17	0	2599358..2599933	-	191	88603591	-	Mhun_2346	-	1-pyrroline-5-carboxylate synthetase
2270	 52.98	+1	2600003..2601682	+	559	88603592	-	Mhun_2347	-	phospholipase D/transphosphatidylase
2271	 52.00	+1	2601683..2602357	-	224	88603593	-	Mhun_2348	-	cytochrome c biogenesis protein, transmembrane region
2272	 48.84	0	2602359..2602919	-	186	88603594	-	Mhun_2349	-	hypothetical protein
2273	 51.19	+1	2602971..2604230	-	419	88603595	-	Mhun_2350	-	gluconate transporter
2274	 48.51	0	2604319..2604687	+	122	88603596	-	Mhun_2351	-	hypothetical protein
2275	 50.47	0	2604671..2605522	-	283	88603597	-	Mhun_2352	-	nicotinate-nucleotide pyrophosphorylase
2276	 49.83	0	2605519..2606421	-	300	88603598	-	Mhun_2353	-	quinolinate synthetase
2277	 48.62	0	2606418..2607176	-	252	88603599	-	Mhun_2354	-	aspartate dehydrogenase
2278	 51.44	+1	2607240..2608526	+	428	88603600	-	Mhun_2355	-	MiaB-like tRNA modifying enzyme
2279	 43.77	0	2608551..2609096	+	181	88603601	-	Mhun_2356	-	hypothetical protein
2280	 47.15	0	2609103..2609594	-	163	88603602	-	Mhun_2357	-	hypothetical protein
2281	 52.71	+1	2609811..2611580	+	589	88603603	-	Mhun_2358	-	thiamine pyrophosphate enzyme-like TPP-binding
2282	 52.08	+1	2611577..2612152	+	191	88603604	-	Mhun_2359	-	pyruvate ferredoxin/flavodoxin oxidoreductase
2283	 52.57	+1	2612459..2613898	+	479	88603605	-	Mhun_2360	-	pyruvate carboxyltransferase
2284	 53.19	+1	2613879..2615132	+	417	88603606	-	Mhun_2361	-	homoaconitate hydratase family protein
2285	 51.94	+1	2615132..2615620	+	162	88603607	-	Mhun_2362	-	3-isopropylmalate dehydratase, small subunit
2286	 51.34	+1	2615608..2616723	+	371	88603608	-	Mhun_2363	-	3-isopropylmalate dehydrogenase
2287	 55.73	+1	2617129..2617914	-	261	88603609	-	Mhun_2364	-	aminoglycoside phosphotransferase
2288	 57.43	+2	2618100..2619323	-	407	88603610	-	Mhun_2365	-	hypothetical protein
2289	 55.89	+2	2619691..2620497	+	268	88603611	-	Mhun_2366	-	hypothetical protein
2290	 55.68	+1	2620510..2621328	+	272	88603612	-	Mhun_2367	-	short-chain dehydrogenase/reductase SDR
2291	 55.27	+1	2621391..2622215	+	274	88603613	-	Mhun_2368	-	short-chain dehydrogenase/reductase SDR
2292	 34.95	-2	2624473..2625522	-	349	88603614	-	Mhun_2371	-	hypothetical protein
2293	 37.25	-1	2625519..2625671	-	50	88603615	-	Mhun_2372	-	transposon-encoded protein
2294	 41.67	0	2626036..2626251	-	71	88603616	-	Mhun_2373	-	transposase
2295	 35.84	-1	2626477..2627115	-	212	88603617	-	Mhun_2374	-	methyltransferase type 11
2296	 26.61	-2	2627177..2627920	+	247	88603618	-	Mhun_2375	-	hypothetical protein
2297	 30.15	-2	2627929..2629185	+	418	88603619	-	Mhun_2376	-	glycosyl transferase, group 1
2298	 42.12	0	2629190..2630668	-	492	88603620	-	Mhun_2377	-	polysaccharide biosynthesis protein
2299	 51.79	+1	2631143..2631505	-	120	88603621	-	Mhun_2378	-	hypothetical protein
2300	 43.07	0	2631570..2631980	-	136	88603622	-	Mhun_2379	-	hypothetical protein
2301	 50.14	0	2632216..2633292	+	358	88603623	-	Mhun_2380	-	hypothetical protein
2302	 48.35	0	2633357..2633842	+	161	88603624	-	Mhun_2381	-	hypothetical protein
2303	 51.83	+1	2633853..2634317	+	154	88603625	-	Mhun_2382	-	hypothetical protein
2304	 51.61	+1	2634356..2634634	+	92	88603626	-	Mhun_2383	-	4Fe-4S ferredoxin, iron-sulfur binding
2305	 46.29	0	2634631..2635587	-	318	88603627	-	Mhun_2384	-	N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase
2306	 44.52	0	2635702..2637864	-	720	88603628	-	Mhun_2385	-	multi-sensor signal transduction histidine kinase
2307	 48.99	0	2638028..2638225	-	65	88603629	-	Mhun_2386	-	rubredoxin-type Fe(Cys)4 protein
2308	 47.62	0	2638296..2638631	+	111	88603630	-	Mhun_2387	-	hypothetical protein
2309	 46.09	0	2638638..2639546	-	302	88603631	-	Mhun_2388	-	Ion transport protein
2310	 47.68	0	2639564..2640037	-	157	88603632	-	Mhun_2389	-	hypothetical protein
2311	 50.79	+1	2640119..2640811	-	230	88603633	-	Mhun_2390	-	tetratricopeptide TPR_2
2312	 50.00	0	2640873..2641508	-	211	88603634	-	Mhun_2391	-	tetratricopeptide TPR_2
2313	 49.54	0	2641568..2643418	-	616	88603635	-	Mhun_2392	-	AMP-dependent synthetase and ligase
2314	 52.27	+1	2643533..2643796	-	87	88603636	-	Mhun_2393	-	2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate
2315	 50.38	0	2643797..2644324	-	175	88603637	-	Mhun_2394	-	2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate
2316	 51.58	+1	2644324..2645430	-	368	88603638	-	Mhun_2395	-	pyruvate flavodoxin/ferredoxin oxidoreductase-like
2317	 51.49	+1	2645424..2646365	-	313	88603639	-	Mhun_2396	-	thiamine pyrophosphate enzyme-like TPP-binding
2318	 49.31	0	2646389..2646676	-	95	88603640	-	Mhun_2397	-	hypothetical protein
2319	 51.78	+1	2646669..2648489	-	606	88603641	-	Mhun_2398	-	ATP-dependent DNA helicase RecQ
2320	 45.90	0	2648664..2649236	+	190	88603642	-	Mhun_2399	-	CheW protein
2321	 51.02	+1	2649233..2650063	-	276	88603643	-	Mhun_2400	-	tRNA pseudouridine synthase A
2322	 52.40	+1	2650030..2650695	-	221	88603644	-	Mhun_2401	-	PHP-like
2323	 52.61	+1	2650743..2652158	+	471	88603645	-	Mhun_2402	-	dihydropteroate synthase
2324	 50.22	0	2652223..2652672	+	149	88603646	-	Mhun_2403	-	hypothetical protein
2325	 48.62	0	2652669..2653139	+	156	88603647	-	Mhun_2404	-	cytidyltransferase-related
2326	 51.72	+1	2653136..2653630	+	164	88603648	-	Mhun_2405	-	hypothetical protein
2327	 51.72	+1	2653674..2654984	+	436	88603649	-	Mhun_2406	-	tetratricopeptide TPR_2
2328	 50.52	0	2654986..2655567	-	193	88603650	-	Mhun_2407	-	ThiJ/PfpI
2329	 47.42	0	2655579..2656721	-	380	88603651	-	Mhun_2408	-	hypothetical protein
2330	 52.69	+1	2656836..2657207	+	123	88603652	-	Mhun_2409	-	pentapeptide repeat-containing protein
2331	 52.67	+1	2657208..2658293	-	361	88603653	-	Mhun_2410	-	hypothetical protein
2332	 52.12	+1	2658297..2659004	-	235	88603654	-	Mhun_2411	-	peptidase S26B, signal peptidase
2333	 51.86	+1	2659127..2660551	+	474	88603655	-	Mhun_2412	-	DNA polymerase II small subunit
2334	 52.27	+1	2660517..2661440	-	307	88603656	-	Mhun_2413	-	tetratricopeptide TPR_2
2335	 52.15	+1	2661612..2663630	+	672	88603657	hppA	Mhun_2414	-	membrane-bound proton-translocating pyrophosphatase
2336	 49.64	0	2663675..2665348	-	557	88603658	-	Mhun_2415	-	peptidase S1 and S6, chymotrypsin/Hap
2337	 48.95	0	2665720..2666577	-	285	88603659	-	Mhun_2416	-	PKD
2338	 45.83	0	2666630..2666965	-	111	88603660	-	Mhun_2417	-	hypothetical protein
2339	 46.15	0	2667688..2668686	-	332	88603661	-	Mhun_2418	-	TPR repeat-containing protein
2340	 43.77	0	2668953..2669690	+	245	88603662	-	Mhun_2419	-	hypothetical protein
2341	 34.83	-2	2669833..2670099	+	88	88603663	-	Mhun_2420	-	hypothetical protein
2342	 38.18	-1	2671018..2671347	+	109	88603664	-	Mhun_2422	-	DNA polymerase, beta-like region
2343	 36.55	-1	2671344..2671685	+	113	88603665	-	Mhun_2423	-	hypothetical protein
2344	 44.32	0	2671832..2672095	-	87	88603666	-	Mhun_2424	-	TPR repeat-containing protein
2345	 45.01	0	2672362..2673192	+	276	88603667	-	Mhun_2425	-	hypothetical protein
2346	 44.65	0	2674416..2679860	-	1814	88603668	-	Mhun_2426	-	PKD
2347	 44.30	0	2679884..2686414	-	2176	88603669	-	Mhun_2427	-	PKD
2348	 39.00	-1	2686419..2687936	-	505	88603670	-	Mhun_2428	-	hypothetical protein
2349	 42.24	0	2688341..2689261	-	306	88603671	-	Mhun_2429	-	hypothetical protein
2350	 39.61	-1	2689826..2690701	-	291	88603672	-	Mhun_2430	-	hypothetical protein
2351	 44.31	0	2690748..2691002	-	84	88603673	-	Mhun_2431	-	hypothetical protein
2352	 42.56	0	2691201..2691980	-	259	88603674	-	Mhun_2432	-	hypothetical protein
2353	 51.55	+1	2692142..2694298	+	718	88603675	-	Mhun_2433	-	catalase/peroxidase HPI
2354	 47.25	0	2694928..2697456	+	842	88603676	-	Mhun_2434	-	multi-sensor signal transduction histidine kinase
2355	 51.83	+1	2697449..2701309	-	1286	88603677	-	Mhun_2435	-	DNA polymerase II large subunit
2356	 51.30	+1	2701387..2702271	-	294	88603678	-	Mhun_2436	-	heat shock protein DnaJ-like
2357	 54.62	+1	2702333..2703502	-	389	88603679	-	Mhun_2437	-	hypothetical protein
2358	 52.01	+1	2703507..2704748	-	413	88603680	-	Mhun_2438	-	carboxylyase-like protein
2359	 49.46	0	2704745..2705296	-	183	88603681	-	Mhun_2439	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2360	 50.21	0	2705685..2708813	+	1042	88603682	-	Mhun_2440	-	PKD
2361	 49.35	0	2708858..2711848	+	996	88603683	-	Mhun_2441	-	PKD
2362	 52.90	+1	2711998..2714823	+	941	88603684	-	Mhun_2442	-	PKD
2363	 50.67	0	2714831..2716030	-	399	88603685	-	Mhun_2443	-	metal dependent phosphohydrolase
2364	 52.57	+1	2716076..2716969	+	297	88603686	-	Mhun_2444	-	LPPG:FO 2-phospho-L-lactate transferase
2365	 51.56	+1	2717244..2718593	-	449	88603687	-	Mhun_2445	-	amidohydrolase
2366	 51.04	+1	2718695..2719987	+	430	88603688	aspC	Mhun_2446	-	aspartyl-tRNA synthetase
45.77	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.