IslandPath Analysis: Methanospirillum hungatei JF-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.77   STD DEV: 5.02
Methanospirillum hungatei JF-1, complete genome - 1..3544738
3139 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1946	 41.13	0	2272077..2272910	+	277	88603268	-	Mhun_2018	-	ABC transporter related
1947	 45.85	0	2272933..2273715	-	260	88603269	-	Mhun_2019	-	formate dehydrogenase family accessory protein FdhD
1948	 46.43	0	2273802..2275046	-	414	88603270	-	Mhun_2020	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
1949	 47.02	0	2275048..2277108	-	686	88603271	-	Mhun_2021	-	formate dehydrogenase, alpha subunit
1950	 46.09	0	2277402..2278553	-	383	88603272	-	Mhun_2022	-	coenzyme F420 hydrogenase/dehydrogenase beta subunit-like
1951	 46.26	0	2278555..2280612	-	685	88603273	-	Mhun_2023	-	formate dehydrogenase, alpha subunit
1952	 39.78	-1	2281613..2283148	-	511	88603274	-	Mhun_2024	-	PAS/PAC sensor signal transduction histidine kinase
1953	 34.82	-2	2283328..2284938	+	536	88603275	-	Mhun_2025	-	transposase, IS4
1954	 40.17	-1	2284961..2286496	-	511	88603276	-	Mhun_2026	-	putative PAS/PAC sensor protein
1955	 45.15	0	2288220..2289116	-	298	88603277	-	Mhun_2028	-	modD protein
1956	 44.81	0	2289246..2290613	-	455	88603278	-	Mhun_2029	-	MATE efflux family protein
1957	 46.53	0	2290661..2292085	-	474	88603279	-	Mhun_2030	-	major facilitator transporter
1958	 32.53	-2	2292226..2292723	-	165	88603280	-	Mhun_2031	-	response regulator receiver domain-containing protein
1959	 38.21	-1	2292729..2296586	-	1285	88603281	-	Mhun_2032	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1960	 32.84	-2	2296850..2297455	-	201	88603282	-	Mhun_2033	-	hypothetical protein
1961	 36.45	-1	2297419..2297835	-	138	88603283	-	Mhun_2034	-	hypothetical protein
1962	 32.20	-2	2297914..2299320	+	468	88603284	-	Mhun_2035	-	putative PAS/PAC sensor protein
1963	 42.62	0	2299651..2300016	-	121	88603285	-	Mhun_2036	-	hypothetical protein
1964	 34.57	-2	2300013..2300498	-	161	88603286	-	Mhun_2037	-	response regulator receiver domain-containing protein
1965	 36.13	-1	2300593..2302167	+	524	88603287	-	Mhun_2038	-	signal transduction histidine kinase regulating citrate/malate metabolism
1966	 36.84	-1	2302196..2302537	+	113	88603288	-	Mhun_2039	-	hypothetical protein
1967	 34.22	-2	2302534..2302872	+	112	88603289	-	Mhun_2040	-	hypothetical protein
1968	 35.53	-2	2302865..2303092	+	75	88603290	-	Mhun_2041	-	hypothetical protein
1969	 45.90	0	2303141..2304310	-	389	88603291	-	Mhun_2042	-	molybdopterin binding domain-containing protein
1970	 45.59	0	2304771..2306018	+	415	88603292	-	Mhun_2043	-	extracellular ligand-binding receptor
1971	 43.64	0	2306130..2306585	+	151	88603293	-	Mhun_2044	-	hypothetical protein
1972	 47.83	0	2306616..2307215	+	199	88603294	-	Mhun_2045	-	tetratricopeptide TPR_2
1973	 49.10	0	2307255..2308034	+	259	88603295	-	Mhun_2046	-	hypothetical protein
1974	 49.78	0	2308049..2312608	+	1519	88603296	-	Mhun_2047	-	hypothetical protein
1975	 50.38	0	2312618..2313415	+	265	88603297	-	Mhun_2048	-	hypothetical protein
1976	 50.68	0	2313445..2314101	+	218	88603298	-	Mhun_2049	-	hypothetical protein
1977	 45.36	0	2314358..2315230	-	290	88603299	-	Mhun_2050	-	ATP phosphoribosyltransferase
1978	 45.96	0	2315902..2316297	+	131	88603300	-	Mhun_2051	-	phosphoribosyl-AMP cyclohydrolase
1979	 45.72	0	2316650..2317093	+	147	88603301	-	Mhun_2052	-	hypothetical protein
1980	 46.44	0	2317136..2319469	-	777	88603302	-	Mhun_2053	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
1981	 45.95	0	2319628..2320404	+	258	88603303	-	Mhun_2054	-	extracellular solute-binding protein
1982	 41.15	0	2320360..2320602	-	80	88603304	-	Mhun_2055	-	hypothetical protein
1983	 40.64	-1	2320750..2321310	+	186	88603305	-	Mhun_2056	-	hypothetical protein
1984	 47.32	0	2321745..2323331	+	528	88603306	-	Mhun_2057	-	hypothetical protein
1985	 45.83	0	2323460..2325163	+	567	88603307	-	Mhun_2058	-	hypothetical protein
1986	 43.71	0	2326519..2326836	+	105	88603308	-	Mhun_2059	-	excisionase/Xis, DNA-binding
1987	 50.86	+1	2326973..2329927	-	984	88603309	-	Mhun_2060	-	tetratricopeptide TPR_2
1988	 50.56	0	2330191..2336232	-	2013	88603310	-	Mhun_2061	-	putative DNA helicase
1989	 46.57	0	2336567..2337397	+	276	88603311	-	Mhun_2062	-	hypothetical protein
1990	 42.10	0	2337460..2338098	+	212	88603312	-	Mhun_2063	-	hypothetical protein
1991	 42.67	0	2338079..2338378	-	99	88603313	-	Mhun_2064	-	hypothetical protein
1992	 50.72	0	2338407..2339861	-	484	88603314	-	Mhun_2065	-	FAD dependent oxidoreductase
1993	 49.46	0	2340319..2341062	-	247	88603315	-	Mhun_2067	-	4Fe-4S ferredoxin, iron-sulfur binding
1994	 49.90	0	2341099..2341593	-	164	88603316	-	Mhun_2068	-	hypothetical protein
1995	 48.55	0	2341772..2343874	+	700	88603317	-	Mhun_2069	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1996	 47.03	0	2343895..2345106	-	403	88603318	-	Mhun_2070	-	hypothetical protein
1997	 43.09	0	2345145..2346005	-	286	88603319	-	Mhun_2071	-	hypothetical protein
1998	 48.10	0	2346034..2347740	-	568	88603320	-	Mhun_2072	-	TrkA-N
1999	 44.78	0	2347818..2348612	+	264	88603321	-	Mhun_2073	-	hypothetical protein
2000	 45.27	0	2348624..2350516	-	630	88603322	-	Mhun_2074	-	clostripain
2001	 47.58	0	2350578..2351918	+	446	88603323	-	Mhun_2075	-	ThiJ/PfpI
2002	 46.37	0	2351919..2353790	-	623	88603324	-	Mhun_2076	-	hypothetical protein
2003	 49.74	0	2353847..2354791	-	314	88603325	-	Mhun_2077	-	tetratricopeptide TPR_2
2004	 47.67	0	2354849..2356264	-	471	88603326	-	Mhun_2078	-	TPR repeat-containing protein
2005	 52.07	+1	2356488..2357720	+	410	88603327	-	Mhun_2079	-	nuclease SbcCD, D subunit
2006	 46.91	0	2357725..2361384	+	1219	88603328	-	Mhun_2080	-	exonuclease SbcC
2007	 49.58	0	2361426..2361782	+	118	88603329	-	Mhun_2081	-	hypothetical protein
2008	 48.00	0	2362051..2362500	+	149	88603330	-	Mhun_2082	-	formylmethanofuran dehydrogenase subunit E-like
2009	 51.75	+1	2362497..2363240	+	247	88603331	-	Mhun_2083	-	ABC transporter related
2010	 50.18	0	2363240..2364070	+	276	88603332	-	Mhun_2084	-	hypothetical protein
2011	 49.32	0	2364096..2364977	+	293	88603333	-	Mhun_2085	-	periplasmic solute binding protein
2012	 50.24	0	2365202..2366035	-	277	88603334	-	Mhun_2086	-	hypothetical protein
2013	 50.06	0	2366032..2366808	-	258	88603335	-	Mhun_2087	-	ABC transporter related
2014	 49.07	0	2366805..2367776	-	323	88603336	-	Mhun_2088	-	periplasmic solute binding protein
2015	 47.18	0	2367779..2368204	-	141	88603337	-	Mhun_2089	-	iron dependent repressor
2016	 48.23	0	2368286..2369218	-	310	88603338	-	Mhun_2090	-	hypothetical protein
2017	 44.54	0	2369215..2369910	-	231	88603339	-	Mhun_2091	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2018	 44.73	0	2370008..2371894	+	628	88603340	-	Mhun_2092	-	putative PAS/PAC sensor protein
2019	 49.75	0	2372049..2372834	+	261	88603341	-	Mhun_2093	-	hypothetical protein
2020	 51.23	+1	2372974..2373459	+	161	88603342	-	Mhun_2094	-	hypothetical protein
2021	 50.46	0	2373456..2373782	+	108	88603343	-	Mhun_2095	-	membrane protein-like
2022	 48.25	0	2373779..2374006	+	75	88603344	-	Mhun_2096	-	hypothetical protein
2023	 45.99	0	2374003..2374239	+	78	88603345	-	Mhun_2097	-	hypothetical protein
2024	 46.37	0	2374236..2374703	+	155	88603346	-	Mhun_2098	-	hypothetical protein
2025	 47.33	0	2374700..2375299	+	199	88603347	-	Mhun_2099	-	uncharacterized membrane protein
2026	 50.53	0	2375292..2375948	+	218	88603348	-	Mhun_2100	-	NADH dehydrogenase I, subunit N related protein
2027	 50.30	0	2376156..2376998	+	280	88603349	-	Mhun_2101	-	respiratory-chain NADH dehydrogenase, subunit 1
2028	 49.19	0	2376995..2377240	+	81	88603350	-	Mhun_2102	-	hypothetical protein
2029	 45.24	0	2377237..2377614	+	125	88603351	-	Mhun_2103	-	hypothetical protein
2030	 53.20	+1	2377611..2378063	+	150	88603352	-	Mhun_2104	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
2031	 51.84	+1	2378060..2379145	+	361	88603353	-	Mhun_2105	-	NADH-ubiquinone oxidoreductase, chain 49kDa
2032	 53.59	+1	2379149..2379760	+	203	88603354	-	Mhun_2106	-	4Fe-4S ferredoxin, iron-sulfur binding
2033	 52.56	+1	2379757..2380146	+	129	88603355	-	Mhun_2107	-	molydopterin dinucleotide-binding region
2034	 49.96	0	2380136..2381440	+	434	88603356	-	Mhun_2108	-	formylmethanofuran dehydrogenase, subunit B
2035	 52.83	+1	2381433..2383130	+	565	88603357	-	Mhun_2109	-	amidohydrolase 3
2036	 33.33	-2	2383182..2383493	+	103	88603358	-	Mhun_2110	-	hypothetical protein
2037	 37.92	-1	2383483..2383896	+	137	88603359	-	Mhun_2111	-	hypothetical protein
2038	 51.63	+1	2383899..2384663	+	254	88603360	-	Mhun_2112	-	formylmethanofuran dehydrogenase
2039	 44.37	0	2384738..2386024	+	428	88603361	-	Mhun_2113	-	UDP-glucose 6-dehydrogenase
2040	 43.53	0	2386026..2386898	+	290	88603362	-	Mhun_2114	-	UTP-glucose-1-phosphate uridylyltransferase
2041	 39.81	-1	2387002..2389086	+	694	88603363	-	Mhun_2115	-	hypothetical protein
2042	 39.78	-1	2389100..2389456	-	118	88603364	-	Mhun_2116	-	putative small multidrug resistance transmembrane protein
2043	 42.19	0	2389465..2390379	-	304	88603365	-	Mhun_2117	-	glycosyl transferase family protein
2044	 43.42	0	2390609..2391619	+	336	88603366	-	Mhun_2118	-	NAD-dependent epimerase/dehydratase
2045	 41.05	0	2391801..2392124	-	107	88603367	-	Mhun_2119	-	hypothetical protein
45.77	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.