IslandPathversion 1.0

IslandPath Analysis: Methanococcoides burtonii DSM 6242



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.89 STD DEV: 4.51
Methanococcoides burtonii DSM 6242, complete genome - 1..2575032
2273 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
142	 33.33	-1	129478..130065	+	195	91772224	-	Mbur_0149	-	hypothetical protein
143	 35.61	-1	134240..135031	-	263	91772225	-	Mbur_0155	-	hypothetical protein
144	 39.96	0	135080..135532	-	150	91772226	-	Mbur_0156	-	hypothetical protein
145	 49.00	+1	135938..137086	-	382	91772227	-	Mbur_0157	-	AAA ATPase
146	 40.91	0	137348..137941	-	197	91772228	-	Mbur_0158	-	phosphoesterase, PA-phosphatase related
147	 40.65	0	138540..138785	-	81	91772229	-	Mbur_0159	-	hypothetical protein
148	 39.94	0	138861..139223	-	120	91772230	-	Mbur_0160	-	hypothetical protein
149	 32.73	-2	139878..140873	+	331	91772231	-	Mbur_0161	-	hypothetical protein
150	 36.59	-1	141168..142334	-	388	91772232	-	Mbur_0162	-	transposase
151	 40.64	0	143381..143722	+	113	91772233	-	Mbur_0164	-	hypothetical protein
152	 47.30	+1	143844..144695	+	283	91772234	-	Mbur_0165	-	UbiE/COQ5 methyltransferase
153	 28.83	-2	145426..145980	+	184	91772235	-	Mbur_0166	-	ArsR family transcriptional regulator
154	 34.31	-1	145977..146894	-	305	91772236	-	Mbur_0167	-	hypothetical protein
155	 31.76	-2	146910..147608	-	232	91772237	-	Mbur_0168	-	hypothetical protein
156	 36.60	-1	147931..148665	+	244	91772238	-	Mbur_0169	-	hypothetical protein
157	 37.27	-1	148695..149963	+	422	91772239	-	Mbur_0170	-	radical SAM family Fe-S protein
158	 29.59	-2	149941..150714	+	257	91772240	-	Mbur_0171	-	alpha/beta hydrolase
159	 31.76	-2	151491..153074	+	527	91772241	-	Mbur_0172	-	hypothetical protein
160	 32.54	-2	153079..153963	+	294	91772242	-	Mbur_0173	-	hypothetical protein
161	 49.36	+1	154400..156034	-	544	91772243	-	Mbur_0174	-	acetolactate synthase, large subunit
162	 49.49	+1	156036..157403	-	455	91772244	-	Mbur_0175	-	succinate-semialdehyde dehydrogenase (NAD(P)+)
163	 46.44	+1	157947..158297	-	116	91772245	-	Mbur_0176	-	hypothetical protein
164	 42.93	0	158321..158518	-	65	91772246	-	Mbur_0177	-	small ribonucleoprotein
165	 44.09	0	158685..159056	-	123	91772247	-	Mbur_0178	-	hypothetical protein
166	 44.55	0	159147..161624	-	825	91772248	-	Mbur_0179	-	DEAD/DEAH box helicase-like protein
167	 38.98	0	161797..162699	+	300	91772249	-	Mbur_0180	-	hypothetical protein
168	 42.22	0	163649..164413	-	254	91772250	-	Mbur_0182	-	methylthioadenosine phosphorylase
169	 40.81	0	164432..165568	-	378	91772251	-	Mbur_0183	-	hypothetical protein
170	 48.24	+1	165839..166462	-	207	91772252	-	Mbur_0184	-	hypothetical protein
171	 47.34	+1	166478..169654	-	1058	91772253	ileS	Mbur_0185	-	isoleucyl-tRNA synthetase
172	 46.00	0	169809..171134	-	441	91772254	-	Mbur_0186	-	L-lysine 2,3-aminomutase
173	 41.53	0	171407..171955	+	182	91772255	-	Mbur_0187	-	RNA-binding protein
174	 41.21	0	172131..172511	+	126	91772256	-	Mbur_0188	-	hypothetical protein
175	 45.65	0	172508..173173	+	221	91772257	-	Mbur_0189	-	ZPR1-like zinc finger protein
176	 45.09	0	173231..174667	+	478	91772258	-	Mbur_0190	-	prolyl-tRNA synthetase
177	 45.50	0	174690..175733	+	347	91772259	-	Mbur_0191	-	hypothetical protein
178	 47.81	+1	176578..177171	+	197	91772260	-	Mbur_0192	-	50S ribosomal protein L15e
179	 45.18	0	177168..177623	+	151	91772261	-	Mbur_0193	-	hypothetical protein
180	 44.49	0	177616..178341	+	241	91772262	-	Mbur_0194	-	ribonuclease P protein component 3
181	 44.44	0	178338..178706	+	122	91772263	-	Mbur_0195	-	ribonuclease P-related protein
182	 46.72	+1	178818..179609	+	263	91772264	-	Mbur_0196	-	proteasome subunit alpha
183	 44.30	0	179653..180345	+	230	91772265	-	Mbur_0197	-	putative RNA-associated protein
184	 42.17	0	180357..181148	+	263	91772266	-	Mbur_0198	-	exosome complex RNA-binding protein Rrp4
185	 46.51	+1	181199..182230	+	343	91772267	-	Mbur_0199	-	exosome complex exonuclease Rrp41
186	 45.38	0	182223..183002	+	259	91772268	-	Mbur_0200	-	exosome complex RNA-binding protein Rrp42
187	 43.40	0	183096..183383	+	95	91772269	rpl37ae	Mbur_0201	-	50S ribosomal protein L37Ae
188	 47.52	+1	183389..183529	+	46	91772270	-	Mbur_0202	-	DNA-directed RNA polymerase subunit P
189	 39.53	0	183536..184003	+	155	91772271	-	Mbur_0203	-	Imp4 family protein
190	 43.14	0	184000..184254	+	84	91772272	-	Mbur_0204	-	hypothetical protein
191	 47.18	+1	184339..184692	+	117	91772273	-	Mbur_0205	-	prefoldin, beta subunit
192	 44.51	0	184754..185719	+	321	91772274	-	Mbur_0206	-	phosphoesterase, RecJ-like protein
193	 44.60	0	185770..187074	+	434	91772275	-	Mbur_0207	-	phenylacetate-CoA ligase
194	 43.84	0	187118..187555	+	145	91772276	-	Mbur_0208	-	amino acid-binding (ACT) protein
195	 46.15	0	187655..188005	+	116	91772277	-	Mbur_0209	-	hypothetical protein
196	 44.07	0	188022..188999	+	325	91772278	-	Mbur_0210	-	hypothetical protein
197	 39.36	0	189047..189859	-	270	91772279	-	Mbur_0211	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
198	 42.17	0	189863..191152	+	429	91772280	-	Mbur_0212	-	hypothetical protein
199	 43.78	0	191160..192107	+	315	91772281	-	Mbur_0213	-	triphosphoribosyl-dephospho-CoA protein
200	 41.21	0	192107..192703	+	198	91772282	-	Mbur_0214	-	hypothetical protein
201	 42.92	0	192707..193186	+	159	91772283	-	Mbur_0215	-	CMP/dCMP deaminase, zinc-binding
202	 40.29	0	193202..194092	-	296	91772284	-	Mbur_0216	-	TPR repeat-containing protein
203	 42.16	0	194363..196921	+	852	91772285	-	Mbur_0217	-	multi-sensor protein
204	 43.50	0	197068..197913	+	281	91772286	-	Mbur_0218	-	hypothetical protein
205	 43.79	0	198129..198482	+	117	91772287	rpl7ae	Mbur_0219	-	50S ribosomal protein L7Ae
206	 46.76	+1	198505..198720	+	71	91772288	rps28e	Mbur_0220	-	30S ribosomal protein S28e
207	 43.39	0	198726..198914	+	62	91772289	-	Mbur_0221	-	50S ribosomal protein L24e
208	 47.78	+1	198929..199378	+	149	91772290	-	Mbur_0222	-	nucleoside diphosphate kinase
209	 44.37	0	199534..201309	+	591	91772291	-	Mbur_0223	-	translation initiation factor IF-2
210	 45.83	0	201400..201807	+	135	91772292	-	Mbur_0224	-	30S ribosomal protein S6e
211	 41.77	0	202102..203346	+	414	91772293	-	Mbur_0225	-	TPR repeat-containing protein
212	 31.37	-2	203379..203735	+	118	91772294	-	Mbur_0226	-	hypothetical protein
213	 39.95	0	203797..204189	+	130	91772295	-	Mbur_0227	-	thioredoxin-related
214	 34.33	-1	204212..205420	-	402	91772296	-	Mbur_0228	-	transposase, IS204/IS1001/IS1096/IS1165
215	 40.89	0	205728..206336	-	202	91772297	-	Mbur_0229	-	hypothetical protein
216	 47.86	+1	206429..206779	-	116	91772298	-	Mbur_0230	-	hypothetical protein
217	 41.73	0	206805..207638	-	277	91772299	-	Mbur_0231	-	ArsR family transcriptional regulator
218	 35.95	-1	207722..207874	-	50	91772300	-	Mbur_0232	-	hypothetical protein
219	 37.33	-1	208509..208808	-	99	91772301	-	Mbur_0233	-	hypothetical protein
220	 42.70	0	209263..210009	-	248	91772302	-	Mbur_0234	-	ArsR family transcriptional regulator
221	 44.14	0	210212..211294	+	360	91772303	-	Mbur_0235	-	hypothetical protein
222	 36.40	-1	211391..211651	+	86	91772304	-	Mbur_0236	-	hypothetical protein
223	 38.01	0	211740..212423	+	227	91772305	-	Mbur_0237	-	hypothetical protein
224	 39.39	0	213078..213539	+	153	91772306	-	Mbur_0239	-	cell surface protein
225	 37.32	-1	213548..214576	+	342	91772307	-	Mbur_0240	-	hypothetical protein
226	 38.23	0	214677..215003	+	108	91772308	-	Mbur_0241	-	hypothetical protein
227	 44.44	0	217249..217545	+	98	91772309	-	Mbur_0243	-	hypothetical protein
228	 34.59	-1	217893..218210	-	105	91772310	-	Mbur_0244	-	hypothetical protein
229	 46.70	+1	218268..219659	+	463	91772311	-	Mbur_0245	-	DEAD/DEAH box helicase-like protein
230	 42.89	0	219967..220740	-	257	91772312	-	Mbur_0246	-	hypothetical protein
231	 43.65	0	222529..224283	-	584	91772313	-	Mbur_0248	-	peptidase M50
232	 43.05	0	224408..224860	-	150	91772314	-	Mbur_0249	-	hypothetical protein
233	 45.25	0	225226..226056	+	276	91772315	-	Mbur_0250	-	fumarate hydratase
234	 43.11	0	226056..226628	+	190	91772316	-	Mbur_0251	-	fumarate hydratase
235	 42.25	0	226742..227728	-	328	91772317	-	Mbur_0252	-	type II secretion system protein
236	 40.39	0	227731..228651	-	306	91772318	-	Mbur_0253	-	type II secretion system protein
237	 39.85	0	228644..230608	-	654	91772319	-	Mbur_0254	-	type II secretion system protein E
238	 46.42	+1	230876..232396	+	506	91772320	-	Mbur_0255	-	thymidine phosphorylase
239	 47.49	+1	232402..232938	+	178	91772321	-	Mbur_0256	-	tRNA 2'-O-methylase
240	 32.32	-2	233028..234116	+	362	91772322	-	Mbur_0257	-	hypothetical protein
241	 43.86	0	234341..235081	-	246	91772323	-	Mbur_0258	-	hypothetical protein
41.89	MEAN

4.51	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.