IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes EGD-e



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 38.00 STD DEV: 3.37
Listeria monocytogenes EGD-e, complete genome - 1..2944528
2846 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1050	 38.10	0	1085806..1086078	+	90	16803098	-	lmo1058	-	hypothetical protein
1051	 36.35	0	1086100..1086630	+	176	16803099	-	lmo1059	-	hypothetical protein
1052	 35.14	0	1086772..1087434	+	220	16803100	-	lmo1060	-	hypothetical protein
1053	 31.40	-1	1087409..1088854	+	481	16803101	-	lmo1061	-	hypothetical protein
1054	 34.46	-1	1088941..1090362	+	473	16803102	-	lmo1062	-	hypothetical protein
1055	 33.33	-1	1090375..1091043	+	222	16803103	-	lmo1063	-	hypothetical protein
1056	 35.03	0	1091110..1092054	-	314	16803104	-	lmo1064	-	hypothetical protein
1057	 37.72	0	1092255..1092869	-	204	16803105	-	lmo1065	-	hypothetical protein
1058	 39.79	0	1093000..1093773	+	257	16803106	-	lmo1066	-	hypothetical protein
1059	 39.48	0	1093965..1095803	+	612	16803107	-	lmo1067	-	hypothetical protein
1060	 32.98	-1	1095975..1096835	+	286	16803108	-	lmo1068	-	hypothetical protein
1061	 31.28	-1	1096874..1097116	-	80	16803109	-	lmo1069	-	hypothetical protein
1062	 35.82	0	1097322..1097603	+	93	16803110	-	lmo1070	-	hypothetical protein
1063	 36.16	0	1097786..1098988	+	400	16803111	-	lmo1071	-	hypothetical protein
1064	 39.15	0	1099266..1102706	+	1146	16803112	pycA	lmo1072	-	pyruvate carboxylase
1065	 35.22	0	1102858..1103757	+	299	16803113	-	lmo1073	-	hypothetical protein
1066	 31.97	-1	1104048..1104851	+	267	16803114	-	lmo1074	-	hypothetical protein
1067	 32.44	-1	1104863..1105864	+	333	16803115	-	lmo1075	-	hypothetical protein
1068	 36.59	0	1106041..1107759	+	572	16803116	-	lmo1076	-	hypothetical protein
1069	 31.97	-1	1107975..1109663	+	562	16803117	-	lmo1077	-	hypothetical protein
1070	 35.17	0	1109705..1110577	-	290	16803118	-	lmo1078	-	hypothetical protein
1071	 33.23	-1	1110769..1113627	+	952	16803119	-	lmo1079	-	hypothetical protein
1072	 32.37	-1	1113759..1115630	+	623	16803120	-	lmo1080	-	hypothetical protein
1073	 35.29	0	1115647..1116513	+	288	16803121	-	lmo1081	-	hypothetical protein
1074	 36.19	0	1116532..1117092	+	186	16803122	-	lmo1082	-	hypothetical protein
1075	 33.23	-1	1117093..1118079	+	328	16803123	-	lmo1083	-	hypothetical protein
1076	 33.33	-1	1118082..1118912	+	276	16803124	-	lmo1084	-	hypothetical protein
1077	 32.33	-1	1118932..1121022	+	696	16803125	-	lmo1085	-	hypothetical protein
1078	 32.35	-1	1121098..1121808	+	236	16803126	ispD	lmo1086	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1079	 36.55	0	1121805..1122830	+	341	16803127	-	lmo1087	-	hypothetical protein
1080	 32.21	-1	1122918..1124078	+	386	16803128	tagB	lmo1088	-	hypothetical protein
1081	 33.33	-1	1124079..1124462	+	127	16803129	tagD	lmo1089	-	hypothetical protein
1082	 33.13	-1	1124484..1125467	+	327	16803130	-	lmo1090	-	hypothetical protein
1083	 33.43	-1	1125482..1126495	+	337	16803131	-	lmo1091	-	hypothetical protein
1084	 39.30	0	1126704..1128194	+	496	16803132	-	lmo1092	-	nicotinate phosphoribosyltransferase
1085	 42.67	+1	1128206..1129030	+	274	16803133	nadE	lmo1093	-	NAD synthetase
1086	 40.13	0	1129043..1129351	+	102	16803134	-	lmo1094	-	hypothetical protein
1087	 42.96	+1	1129412..1129816	+	134	16803135	-	lmo1095	-	hypothetical protein
1088	 42.97	+1	1129945..1131501	+	518	16803136	guaA	lmo1096	-	bifunctional GMP synthase/glutamine amidotransferase protein
1089	 33.83	-1	1131558..1132760	-	400	16803137	-	lmo1097	-	hypothetical protein
1090	 29.87	-2	1133466..1133696	-	76	16803138	-	lmo1098	-	hypothetical protein
1091	 31.90	-1	1133698..1134117	-	139	16803139	-	lmo1099	-	hypothetical protein
1092	 34.23	-1	1134472..1136595	-	707	16803140	cadA	lmo1100	-	cadmium resistance protein
1093	 29.14	-2	1136900..1137400	+	166	16803141	-	lmo1101	-	hypothetical protein
1094	 27.98	-2	1137533..1137868	-	111	16803142	-	lmo1102	-	hypothetical protein
1095	 34.10	-1	1137997..1138914	-	305	16803143	-	lmo1103	-	hypothetical protein
1096	 40.45	0	1138930..1139940	-	336	16803144	-	lmo1104	-	hypothetical protein
1097	 38.89	0	1139940..1142099	-	719	16803145	-	lmo1105	-	hypothetical protein
1098	 38.43	0	1142099..1144549	-	816	16803146	-	lmo1106	-	hypothetical protein
1099	 37.63	0	1144533..1144928	-	131	16803147	-	lmo1107	-	hypothetical protein
1100	 39.52	0	1145211..1145711	-	166	16803148	-	lmo1108	-	hypothetical protein
1101	 40.54	0	1145723..1145944	-	73	16803149	-	lmo1109	-	hypothetical protein
1102	 37.80	0	1145941..1146231	-	96	16803150	-	lmo1110	-	hypothetical protein
1103	 39.49	0	1146228..1147412	-	394	16803151	-	lmo1111	-	hypothetical protein
1104	 38.54	0	1147603..1149003	-	466	16803152	-	lmo1112	-	hypothetical protein
1105	 39.47	0	1149011..1149385	-	124	16803153	-	lmo1113	-	hypothetical protein
1106	 36.51	0	1149406..1149720	-	104	16803154	-	lmo1114	-	hypothetical protein
1107	 35.23	0	1149887..1152475	-	862	16803155	-	lmo1115	-	hypothetical protein
1108	 31.27	-1	1153010..1153783	+	257	16803156	-	lmo1116	-	hypothetical protein
1109	 33.05	-1	1153848..1154204	+	118	16803157	-	lmo1117	-	hypothetical protein
1110	 27.27	-2	1154864..1156381	-	505	16803158	-	lmo1118	-	hypothetical protein
1111	 28.67	-2	1156384..1157241	-	285	16803159	-	lmo1119	-	hypothetical protein
1112	 34.05	-1	1157592..1158008	+	138	16803160	-	lmo1120	-	hypothetical protein
1113	 26.02	-2	1158020..1158388	+	122	16803161	-	lmo1121	-	hypothetical protein
1114	 31.19	-2	1158425..1158844	+	139	16803162	-	lmo1122	-	hypothetical protein
1115	 28.27	-2	1158930..1159403	+	157	16803163	-	lmo1123	-	hypothetical protein
1116	 31.51	-1	1159393..1159830	+	145	16803164	-	lmo1124	-	hypothetical protein
1117	 31.46	-1	1160220..1160753	+	177	16803165	-	lmo1125	-	hypothetical protein
1118	 36.42	0	1160778..1161230	+	150	16803166	-	lmo1126	-	hypothetical protein
1119	 33.55	-1	1161220..1161675	+	151	16803167	-	lmo1127	-	hypothetical protein
1120	 40.57	0	1161689..1162711	-	340	16803168	-	lmo1128	-	hypothetical protein
1121	 33.98	-1	1162666..1163280	-	204	16803169	-	lmo1129	-	hypothetical protein
1122	 33.47	-1	1163277..1163996	-	239	16803170	-	lmo1130	-	hypothetical protein
1123	 37.18	0	1164245..1165960	+	571	16803171	-	lmo1131	-	hypothetical protein
1124	 38.25	0	1165962..1167608	+	548	16803172	-	lmo1132	-	hypothetical protein
1125	 36.57	0	1167645..1167953	-	102	16803173	-	lmo1133	-	hypothetical protein
1126	 31.03	-2	1168021..1168368	+	115	16803174	-	lmo1134	-	hypothetical protein
1127	 32.90	-1	1168390..1169541	+	383	16803175	-	lmo1135	-	hypothetical protein
1128	 38.70	0	1170002..1171621	+	539	16803176	-	lmo1136	-	hypothetical protein
1129	 31.03	-2	1171662..1172009	-	115	16803177	-	lmo1137	-	hypothetical protein
1130	 39.27	0	1172076..1172648	-	190	16803178	-	lmo1138	-	ATP-dependent Clp protease proteolytic subunit
1131	 34.17	-1	1172797..1173036	-	79	16803179	-	lmo1139	-	hypothetical protein
1132	 41.91	+1	1173144..1173551	-	135	16803180	-	lmo1140	-	hypothetical protein
1133	 40.83	0	1173643..1174122	+	159	16803181	-	lmo1141	-	hypothetical protein
1134	 40.44	0	1174241..1175605	+	454	16803182	-	lmo1142	-	hypothetical protein
1135	 40.90	0	1175602..1176156	+	184	16803183	-	lmo1143	-	hypothetical protein
1136	 36.47	0	1176304..1176654	+	116	16803184	-	lmo1144	-	hypothetical protein
1137	 39.12	0	1176660..1177091	+	143	16803185	-	lmo1145	-	hypothetical protein
1138	 43.07	+1	1177116..1177865	+	249	16803186	-	lmo1146	-	hypothetical protein
1139	 42.65	+1	1177862..1178419	+	185	16803187	-	lmo1147	-	hypothetical protein
1140	 41.63	+1	1178421..1179167	+	248	16803188	-	lmo1148	-	hypothetical protein
1141	 38.72	0	1179168..1179743	+	191	16803189	-	lmo1149	-	hypothetical protein
1142	 38.19	0	1180152..1181036	-	294	16803190	-	lmo1150	-	transcriptional regulator PocR
1143	 47.22	+2	1181338..1181625	+	95	16803191	-	lmo1151	-	hypothetical protein
1144	 42.17	+1	1181720..1182421	+	233	16803192	-	lmo1152	-	hypothetical protein
1145	 41.14	0	1182440..1184104	+	554	16803193	-	lmo1153	-	hypothetical protein
1146	 39.70	0	1184142..1184801	+	219	16803194	-	lmo1154	-	hypothetical protein
1147	 38.60	0	1184818..1185330	+	170	16803195	-	lmo1155	-	hypothetical protein
1148	 42.83	+1	1185375..1187195	+	606	16803196	-	lmo1156	-	hypothetical protein
1149	 39.08	0	1187192..1187539	+	115	16803197	-	lmo1157	-	hypothetical protein
38.00	MEAN

3.37	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.