IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.91   STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
48	 32.69	-1	52636..53415	+	259	46906272	-	LMOf2365_0050	-	phosphosugar-binding protein
49	 34.70	0	53519..54178	+	219	46906273	-	LMOf2365_0051	-	DedA family protein
50	 37.88	0	54257..55489	+	410	46906274	arcA	LMOf2365_0052	-	arginine deiminase
51	 35.71	0	55768..56061	+	97	46906275	rpsF	LMOf2365_0053	-	30S ribosomal protein S6
52	 40.97	0	56117..56653	+	178	46906276	ssb-1	LMOf2365_0054	-	single-strand binding protein
53	 39.58	0	56697..56936	+	79	46906277	rpsR	LMOf2365_0055	-	30S ribosomal protein S18
54	 32.52	-1	57089..57700	+	203	46906278	-	LMOf2365_0056	-	putative lipoprotein
55	 35.61	0	57957..58571	+	204	46906279	-	LMOf2365_0057	-	putative accessory gene regulator protein
56	 30.07	-2	58564..58716	+	50	46906280	-	LMOf2365_0058	-	accessory gene regulator protein D, putative
57	 31.79	-1	58812..60107	+	431	46906281	agrC	LMOf2365_0059	-	accessory gene regulator protein C
58	 34.84	0	60126..60854	+	242	46906282	agrA	LMOf2365_0060	-	accessory gene regulator protein A
59	 42.55	+1	61021..62994	+	657	46906283	-	LMOf2365_0061	-	DHH subfamily 1 protein
60	 35.12	0	62997..63443	+	148	46906284	rplI	LMOf2365_0062	-	50S ribosomal protein L9
61	 42.35	+1	63468..64820	+	450	46906285	dnaB	LMOf2365_0063	-	replicative DNA helicase
62	 30.00	-2	64876..65025	+	49	46906286	-	LMOf2365_0064	-	hypothetical protein
63	 39.98	0	65079..66371	+	430	46906287	purA	LMOf2365_0065	-	adenylosuccinate synthetase
64	 26.80	-2	66420..66572	+	50	46906288	-	LMOf2365_0066	-	hypothetical protein
65	 38.44	0	66674..66967	+	97	46906289	-	LMOf2365_0067	-	hypothetical protein
66	 36.51	0	67116..70322	+	1068	46906290	-	LMOf2365_0068	-	hypothetical protein
67	 38.57	0	70312..70827	+	171	46906291	-	LMOf2365_0069	-	hypothetical protein
68	 34.13	-1	70845..71096	+	83	46906292	-	LMOf2365_0070	-	hypothetical protein
69	 35.17	0	71118..72314	+	398	46906293	-	LMOf2365_0071	-	hypothetical protein
70	 40.16	0	72328..76821	+	1497	46906294	-	LMOf2365_0072	-	diarrheal toxin/FtsK/SpoIIIE family protein
71	 34.85	0	76841..77236	+	131	46906295	-	LMOf2365_0073	-	hypothetical protein
72	 35.67	0	77229..77528	+	99	46906296	-	LMOf2365_0074	-	hypothetical protein
73	 35.47	0	77525..78226	+	233	46906297	-	LMOf2365_0075	-	hypothetical protein
74	 36.64	0	78227..78559	+	110	46906298	-	LMOf2365_0076	-	hypothetical protein
75	 44.31	+1	78573..80249	+	558	46906299	-	LMOf2365_0077	-	hypothetical protein
76	 23.59	-2	80262..80651	+	129	46906300	-	LMOf2365_0078	-	hypothetical protein
77	 24.33	-2	80789..81199	+	136	46906301	-	LMOf2365_0079	-	hypothetical protein
78	 35.29	0	81384..81638	+	84	46906302	-	LMOf2365_0080	-	hypothetical protein
79	 30.56	-2	81770..82093	+	107	46906303	-	LMOf2365_0081	-	hypothetical protein
80	 43.17	+1	82350..84047	+	565	46906304	-	LMOf2365_0082	-	hypothetical protein
81	 25.75	-2	84049..84483	+	144	46906305	-	LMOf2365_0083	-	hypothetical protein
82	 39.24	0	84907..85617	+	236	46906306	-	LMOf2365_0084	-	hypothetical protein
83	 33.33	-1	85618..85941	+	107	46906307	-	LMOf2365_0085	-	hypothetical protein
84	 37.07	0	86108..86401	+	97	46906308	-	LMOf2365_0086	-	hypothetical protein
85	 27.52	-2	86538..87260	+	240	46906309	-	LMOf2365_0087	-	hypothetical protein
86	 36.61	0	87500..87682	+	60	46906310	-	LMOf2365_0088	-	hypothetical protein
87	 32.35	-1	88139..88240	+	33	46906311	-	LMOf2365_0089	-	hypothetical protein
88	 30.18	-2	88367..88651	+	94	46906312	-	LMOf2365_0090	-	hypothetical protein
89	 26.00	-2	88639..89088	+	149	46906313	-	LMOf2365_0091	-	hypothetical protein
90	 44.96	+1	89326..90099	+	257	46906314	-	LMOf2365_0092	-	transferase, putative
91	 41.60	+1	90096..91148	+	350	46906315	ada	LMOf2365_0093	-	Ada regulatory protein
92	 38.24	0	91170..91883	-	237	46906316	-	LMOf2365_0094	-	pentapeptide repeat-containing protein
93	 44.10	+1	91939..92895	+	318	46906317	-	LMOf2365_0095	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
94	 37.66	0	93236..94759	+	507	46906318	-	LMOf2365_0096	-	hypothetical protein
95	 30.42	-2	94741..95118	+	125	46906319	-	LMOf2365_0097	-	hypothetical protein
96	 27.83	-2	95591..95935	+	114	46906320	-	LMOf2365_0098	-	hypothetical protein
97	 34.80	0	96061..96402	+	113	46906321	-	LMOf2365_0099	-	hypothetical protein
98	 39.84	0	96469..96837	-	122	46906322	-	LMOf2365_0100	-	MerR family transcriptional regulator
99	 41.87	+1	96893..97876	-	327	46906323	-	LMOf2365_0101	-	aldo/keto reductase family oxidoreductase
100	 32.17	-1	98267..98956	+	229	46906324	-	LMOf2365_0102	-	hypothetical protein
101	 34.90	0	99033..104912	+	1959	46906325	-	LMOf2365_0103	-	hypothetical protein
102	 35.54	0	104909..107218	+	769	46906326	-	LMOf2365_0104	-	hypothetical protein
103	 42.80	+1	107275..107517	+	80	46906327	-	LMOf2365_0105	-	ATP synthase F0, C subunit family protein
104	 34.50	0	107529..108560	+	343	46906328	-	LMOf2365_0106	-	ATP synthase F1, delta subunit, putative
105	 39.21	0	108557..110053	+	498	46906329	atpA-1	LMOf2365_0107	-	F0F1 ATP synthase subunit alpha
106	 37.59	0	110050..110919	+	289	46906330	-	LMOf2365_0108	-	ATP synthase F1, gamma subunit, putative
107	 39.31	0	110920..112290	+	456	46906331	atpD-1	LMOf2365_0109	-	F0F1 ATP synthase subunit beta
108	 38.44	0	112303..112635	+	110	46906332	-	LMOf2365_0110	-	ATP synthase F1, epsilon subunit, putative
109	 34.05	-1	112616..113176	+	186	46906333	-	LMOf2365_0111	-	hypothetical protein
110	 34.91	0	113351..113983	+	210	46906334	-	LMOf2365_0112	-	hypothetical protein
111	 40.89	0	114281..115246	+	321	46906335	manL	LMOf2365_0113	-	PTS system, mannose-specific, IIAB component
112	 42.75	+1	115270..116076	+	268	46906336	-	LMOf2365_0114	-	PTS system mannose/fructose/sorbose family IIC subunit
113	 40.46	0	116098..117009	+	303	46906337	-	LMOf2365_0115	-	PTS system mannose/fructose/sorbose family IID subunit
114	 38.21	0	117136..117525	+	129	46906338	-	LMOf2365_0116	-	hypothetical protein
115	 36.75	0	117647..117997	+	116	46906339	-	LMOf2365_0117	-	hypothetical protein
116	 35.70	0	118038..119555	-	505	46906340	-	LMOf2365_0118	-	hypothetical protein
117	 32.31	-1	119670..119963	-	97	46906341	-	LMOf2365_0119	-	ArsR family transcriptional regulator
118	 37.80	0	120075..120365	+	96	46906342	-	LMOf2365_0120	-	YneC family protein
119	 40.44	0	120379..121011	+	210	46906343	-	LMOf2365_0121	-	nitroreductase family protein
120	 33.33	-1	121107..121478	+	123	46906344	-	LMOf2365_0122	-	hypothetical protein
121	 41.52	+1	121757..124039	+	760	46906345	chiB	LMOf2365_0123	-	chitinase B
122	 38.98	0	124142..125044	+	300	46906346	-	LMOf2365_0124	-	ROK family protein
123	 39.73	0	125069..126850	-	593	46906347	-	LMOf2365_0125	-	ABC transporter, ATP-binding/permease protein
124	 40.12	0	126843..128609	-	588	46906348	-	LMOf2365_0126	-	ABC transporter, ATP-binding/permease protein
125	 37.29	0	128728..129561	+	277	46906349	-	LMOf2365_0127	-	AraC family transcriptional regulator
126	 43.35	+1	129704..130711	+	335	46906350	-	LMOf2365_0128	-	lipase
127	 36.91	0	130827..131525	+	232	46906351	-	LMOf2365_0129	-	EAL domain-containing protein
128	 36.06	0	131495..132190	-	231	46906352	-	LMOf2365_0130	-	hypothetical protein
129	 32.03	-1	132409..132870	-	153	46906353	-	LMOf2365_0131	-	hypothetical protein
130	 35.12	0	132867..133202	-	111	46906354	-	LMOf2365_0132	-	repressor protein, putative
131	 35.90	0	133419..133847	+	142	46906355	lmaD	LMOf2365_0133	-	antigen D
132	 36.69	0	133859..134275	+	138	46906356	lmaC	LMOf2365_0134	-	antigen C
133	 37.18	0	134555..134944	+	129	46906357	lmaB	LMOf2365_0135	-	antigen B
134	 41.52	+1	134957..135469	+	170	46906358	lmaA	LMOf2365_0136	-	antigen A
135	 33.00	-1	135517..135819	+	100	46906359	-	LMOf2365_0137	-	hypothetical protein
136	 34.81	0	135861..136265	+	134	46906360	-	LMOf2365_0138	-	hypothetical protein
137	 40.82	0	136252..138120	+	622	46906361	-	LMOf2365_0139	-	hypothetical protein
138	 38.46	0	138117..138935	+	272	46906362	-	LMOf2365_0140	-	hypothetical protein
139	 35.18	0	138945..140081	+	378	46906363	-	LMOf2365_0141	-	minor structural protein, putative
140	 37.33	0	140071..140370	+	99	46906364	-	LMOf2365_0142	-	hypothetical protein
141	 36.46	0	140385..140960	+	191	46906365	-	LMOf2365_0143	-	hypothetical protein
142	 43.33	+1	140975..141454	+	159	46906366	-	LMOf2365_0144	-	hypothetical protein
143	 36.13	0	141451..141987	+	178	46906367	-	LMOf2365_0145	-	hypothetical protein
144	 38.30	0	142006..142428	+	140	46906368	-	LMOf2365_0146	-	holin, putative
145	 35.12	0	142409..143137	+	242	46906369	-	LMOf2365_0147	-	N-acetylmuramoyl-L-alanine amidase
146	 42.23	+1	143175..145523	-	782	46906370	-	LMOf2365_0148	-	Ser/Thr protein phosphatase family protein
147	 34.93	0	145717..146466	+	249	46906371	-	LMOf2365_0149	-	EAL domain-containing protein
37.91	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.