IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1415	 36.40	0	1421032..1421259	+	75	46907639	-	LMOf2365_1430	-	DNA-binding protein
1416	 30.90	-1	1421299..1421832	+	177	46907640	flaR	LMOf2365_1431	-	DNA topology modulation protein FlaR
1417	 35.68	0	1422067..1423389	-	440	46907641	-	LMOf2365_1432	-	cell wall surface anchor family protein
1418	 40.26	0	1423576..1424745	-	389	46907642	-	LMOf2365_1433	-	acetyl-CoA acetyltransferase
1419	 37.53	0	1424895..1426061	+	388	46907643	mvaS	LMOf2365_1434	-	hydroxymethylglutaryl-CoA synthase
1420	 35.33	0	1426084..1426683	-	199	46907644	-	LMOf2365_1435	-	transporter, putative
1421	 36.31	0	1426753..1427997	-	414	46907645	-	LMOf2365_1436	-	transporter, putative
1422	 37.83	0	1428016..1429284	-	422	46907646	-	LMOf2365_1437	-	type I phosphodiesterase/nucleotide pyrophosphatase family protein
1423	 32.76	-1	1429348..1430385	-	345	46907647	-	LMOf2365_1438	-	hypothetical protein
1424	 38.57	0	1430402..1431298	-	298	46907648	murB	LMOf2365_1439	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1425	 39.31	0	1431514..1432500	+	328	46907649	-	LMOf2365_1440	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
1426	 35.51	0	1432497..1434011	+	504	46907650	-	LMOf2365_1441	-	glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein
1427	 32.49	-1	1434047..1434877	-	276	46907651	-	LMOf2365_1442	-	hypothetical protein
1428	 37.12	0	1435016..1436362	-	448	46907652	-	LMOf2365_1443	-	manganese transport protein MntH
1429	 40.62	0	1436475..1437146	-	223	46907653	opuCD	LMOf2365_1444	-	glycine betaine/L-proline ABC transporter, permease protein
1430	 35.28	0	1437161..1438087	-	308	46907654	opuCC	LMOf2365_1445	-	glycine betaine/L-proline ABC transporter, glycine betaine/L-proline-binding protein
1431	 39.57	0	1438089..1438745	-	218	46907655	opuCB	LMOf2365_1446	-	glycine betaine/L-proline ABC transporter, permease protein
1432	 38.27	0	1438749..1439942	-	397	46907656	opuCA	LMOf2365_1447	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
1433	 39.57	0	1440235..1440795	-	186	46907657	-	LMOf2365_1448	-	hypothetical protein
1434	 32.03	-1	1441043..1441426	-	127	46907658	-	LMOf2365_1449	-	hypothetical protein
1435	 37.20	0	1441566..1443167	+	533	46907659	-	LMOf2365_1450	-	ABC transporter, ATP-binding protein
1436	 34.41	0	1443206..1443856	-	216	46907660	-	LMOf2365_1451	-	hypothetical protein
1437	 38.85	0	1443909..1445249	-	446	46907661	-	LMOf2365_1452	-	pyridine nucleotide-disulfide oxidoreductase family protein
1438	 35.49	0	1445338..1447005	-	555	46907662	-	LMOf2365_1453	-	metallo-beta-lactamase family protein
1439	 37.98	0	1447025..1447906	-	293	46907663	dapA	LMOf2365_1454	-	dihydrodipicolinate synthase
1440	 38.37	0	1447921..1449132	-	403	46907664	-	LMOf2365_1455	-	aspartate kinase I
1441	 38.89	0	1449144..1450187	-	347	46907665	asd	LMOf2365_1456	-	aspartate-semialdehyde dehydrogenase
1442	 37.81	0	1450385..1452550	-	721	46907666	-	LMOf2365_1457	-	penicillin-binding protein
1443	 39.90	0	1452680..1453288	-	202	46907667	sod	LMOf2365_1458	-	superoxide dismutase, Mn
1444	 34.33	0	1453590..1454390	+	266	46907668	-	LMOf2365_1459	-	hypothetical protein
1445	 40.11	0	1454502..1455608	+	368	46907669	ispG	LMOf2365_1460	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1446	 38.14	0	1455644..1456351	+	235	46907670	-	LMOf2365_1461	-	AzlC family protein
1447	 34.86	0	1456342..1456668	+	108	46907671	-	LMOf2365_1462	-	hypothetical protein
1448	 33.22	-1	1456750..1457634	-	294	46907672	prsA-1	LMOf2365_1463	-	protein export protein
1449	 34.74	0	1457769..1458194	-	141	46907673	zurR	LMOf2365_1464	-	transcriptional regulator ZurR
1450	 34.12	-1	1458175..1459062	-	295	46907674	zurM-2	LMOf2365_1465	-	zinc ABC transporter, permease protein
1451	 38.24	0	1459028..1459801	-	257	46907675	zurA-2	LMOf2365_1466	-	zinc ABC transporter, ATP-binding protein
1452	 38.19	0	1459946..1460872	-	308	46907676	ppaC	LMOf2365_1467	-	putative manganese-dependent inorganic pyrophosphatase
1453	 39.26	0	1460889..1461782	-	297	46907677	nfo	LMOf2365_1468	-	endonuclease IV
1454	 37.46	0	1461798..1463105	-	435	46907678	-	LMOf2365_1469	-	ATP-dependent RNA helicase, putative
1455	 39.76	0	1463251..1464246	+	331	46907679	ispH	LMOf2365_1470	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1456	 34.67	0	1464292..1465413	-	373	46907680	-	LMOf2365_1471	-	hypothetical protein
1457	 37.76	0	1465410..1466132	-	240	46907681	-	LMOf2365_1472	-	hypothetical protein
1458	 40.44	0	1466182..1467306	-	374	46907682	rpoD	LMOf2365_1473	-	RNA polymerase sigma factor RpoD
1459	 37.69	0	1467401..1469281	-	626	46907683	dnaG	LMOf2365_1474	-	DNA primase
1460	 37.19	0	1469301..1469741	-	146	46907684	-	LMOf2365_1475	-	hypothetical protein
1461	 36.73	0	1469929..1470753	-	274	46907685	-	LMOf2365_1476	-	hypothetical protein
1462	 36.09	0	1470788..1472854	-	688	46907686	glyS	LMOf2365_1477	-	glycyl-tRNA synthetase, beta subunit
1463	 39.62	0	1472847..1473737	-	296	46907687	glyQ	LMOf2365_1478	-	glycyl-tRNA synthetase subunit alpha
1464	 36.59	0	1474020..1474787	-	255	46907688	recO	LMOf2365_1479	-	DNA repair protein RecO
1465	 33.06	-1	1474833..1475552	+	239	46907689	-	LMOf2365_1480	-	hypothetical protein
1466	 34.22	-1	1475599..1476504	-	301	46907690	era	LMOf2365_1481	-	GTP-binding protein Era
1467	 41.16	0	1476501..1476896	-	131	46907691	cdd	LMOf2365_1482	-	cytidine deaminase
1468	 36.36	0	1476921..1477316	-	131	46907692	dgkA	LMOf2365_1483	-	diacylglycerol kinase
1469	 39.30	0	1477294..1477779	-	161	46907693	-	LMOf2365_1484	-	putative metalloprotease
1470	 35.42	0	1477796..1479952	-	718	46907694	-	LMOf2365_1485	-	HDIG domain-containing protein
1471	 37.08	0	1479968..1480927	-	319	46907695	-	LMOf2365_1486	-	PhoH family protein
1472	 39.91	0	1481115..1481570	-	151	46907696	-	LMOf2365_1487	-	GatB/Yqey domain-containing protein
1473	 36.78	0	1481581..1481754	-	57	46907697	rpsU	LMOf2365_1488	-	30S ribosomal protein S21
1474	 38.15	0	1481952..1482719	-	255	46907698	-	LMOf2365_1489	-	hypothetical protein
1475	 38.73	0	1482720..1483664	-	314	46907699	prmA	LMOf2365_1490	-	ribosomal protein L11 methyltransferase
1476	 41.73	+1	1483736..1484866	-	376	46907700	dnaJ	LMOf2365_1491	-	chaperone protein DnaJ
1477	 39.20	0	1485008..1486849	-	613	46907701	dnaK	LMOf2365_1492	-	chaperone protein DnaK
1478	 38.19	0	1486883..1487458	-	191	46907702	grpE	LMOf2365_1493	-	co-chaperone GrpE
1479	 37.38	0	1487500..1488537	-	345	46907703	hrcA	LMOf2365_1494	-	heat-inducible transcription repressor
1480	 36.44	0	1488684..1489841	-	385	46907704	-	LMOf2365_1495	-	coproporphyrinogen III oxidase
1481	 36.54	0	1489930..1490958	-	342	46907705	-	LMOf2365_1496	-	hypothetical protein
1482	 34.02	-1	1491071..1491508	+	145	46907706	-	LMOf2365_1497	-	MerR family transcriptional regulator
1483	 37.06	0	1491554..1493380	-	608	46907707	lepA	LMOf2365_1498	-	GTP-binding protein LepA
1484	 39.22	0	1493625..1493879	+	84	46907708	rpsT	LMOf2365_1499	-	30S ribosomal protein S20
1485	 34.40	0	1493965..1494996	-	343	46907709	holA	LMOf2365_1500	-	DNA polymerase III subunit delta
1486	 33.84	-1	1495064..1497223	-	719	46907710	-	LMOf2365_1501	-	comEC/Rec2 family protein
1487	 38.32	0	1497321..1497881	-	186	46907711	-	LMOf2365_1502	-	zinc-binding, ComEB family protein
1488	 36.64	0	1497953..1498588	-	211	46907712	-	LMOf2365_1503	-	ComEA family DNA-binding protein
1489	 35.38	0	1498658..1499389	-	243	46907713	-	LMOf2365_1504	-	hypothetical protein
1490	 38.38	0	1499445..1499801	-	118	46907714	-	LMOf2365_1505	-	iojap-related protein
1491	 38.19	0	1499806..1500381	-	191	46907715	-	LMOf2365_1506	-	hypothetical protein
1492	 38.98	0	1500368..1500934	-	188	46907716	nadD	LMOf2365_1507	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
1493	 35.05	0	1500952..1501242	-	96	46907717	-	LMOf2365_1508	-	hypothetical protein
1494	 37.47	0	1501242..1502063	-	273	46907718	aroE-2	LMOf2365_1509	-	shikimate 5-dehydrogenase
1495	 38.78	0	1502083..1503183	-	366	46907719	-	LMOf2365_1510	-	GTP-binding protein YqeH
1496	 36.78	0	1503180..1503701	-	173	46907720	-	LMOf2365_1511	-	hypothetical protein
1497	 38.92	0	1503863..1505671	+	602	46907721	-	LMOf2365_1512	-	M3 family peptidase
1498	 38.60	0	1505707..1506408	-	233	46907722	-	LMOf2365_1513	-	MTA/SAH nucleosidase
1499	 37.66	0	1506458..1507081	-	207	46907723	-	LMOf2365_1514	-	hypothetical protein
1500	 37.68	0	1507132..1507614	-	160	46907724	-	LMOf2365_1515	-	transcription elongation factor GreA
1501	 34.76	0	1507808..1508437	-	209	46907725	udk	LMOf2365_1516	-	uridine kinase
1502	 37.61	0	1508434..1509087	-	217	46907726	-	LMOf2365_1517	-	O-methyltransferase family protein
1503	 32.68	-1	1509163..1510233	-	356	46907727	-	LMOf2365_1518	-	hypothetical protein
1504	 38.76	0	1510436..1511062	+	208	46907728	-	LMOf2365_1519	-	DedA family protein
1505	 34.98	0	1511108..1511410	-	100	46907729	-	LMOf2365_1520	-	hypothetical protein
1506	 41.25	0	1511426..1511842	-	138	46907730	-	LMOf2365_1521	-	hypothetical protein
1507	 34.80	0	1511839..1512111	-	90	46907731	-	LMOf2365_1522	-	hypothetical protein
1508	 39.62	0	1512203..1514842	-	879	46907732	alaS	LMOf2365_1523	-	alanyl-tRNA synthetase
1509	 36.93	0	1515149..1515844	-	231	46907733	-	LMOf2365_1524	-	ABC transporter, ATP-binding protein
1510	 39.13	0	1515853..1517352	-	499	46907734	-	LMOf2365_1525	-	ABC transporter, permease protein
1511	 36.97	0	1517519..1518205	+	228	46907735	-	LMOf2365_1526	-	DNA-binding response regulator
1512	 34.45	0	1518211..1519641	+	476	46907736	-	LMOf2365_1527	-	sensor histidine kinase
1513	 40.30	0	1519683..1522079	-	798	46907737	-	LMOf2365_1528	-	RecD/TraA family helicase
1514	 36.02	0	1522107..1522775	-	222	46907738	-	LMOf2365_1529	-	TPR domain-containing protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.