IslandPathversion 1.0

IslandPath Analysis: Listeria monocytogenes str. 4b F2365



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.91 STD DEV: 3.60
Listeria monocytogenes str. 4b F2365, complete genome - 1..2905187
2821 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1034	 35.92	0	1054941..1055906	-	321	46907258	-	LMOf2365_1047	-	transcriptional regulator, putative
1035	 38.43	0	1056015..1057682	-	555	46907259	-	LMOf2365_1048	-	metallo-beta-lactamase family protein
1036	 36.67	0	1057689..1057898	-	69	46907260	-	LMOf2365_1049	-	hypothetical protein
1037	 38.52	0	1058382..1059152	+	256	46907261	-	LMOf2365_1050	-	Cof-like hydrolase
1038	 36.35	0	1059200..1060228	-	342	46907262	-	LMOf2365_1051	-	LacI family transcription regulator
1039	 38.46	0	1060491..1061894	+	467	46907263	-	LMOf2365_1052	-	hypothetical protein
1040	 39.88	0	1061910..1062734	+	274	46907264	-	LMOf2365_1053	-	transketolase, N-terminal subunit
1041	 41.24	0	1062727..1063674	+	315	46907265	-	LMOf2365_1054	-	transketolase, C-terminal subunit, putative
1042	 37.98	0	1063671..1065134	+	487	46907266	glpK-1	LMOf2365_1055	-	glycerol kinase
1043	 37.10	0	1065131..1066987	+	618	46907267	-	LMOf2365_1056	-	PTS system, beta-glucoside-specific, IIABC component
1044	 36.26	0	1067007..1068272	+	421	46907268	-	LMOf2365_1057	-	hypothetical protein
1045	 34.95	0	1068333..1069136	-	267	46907269	-	LMOf2365_1058	-	hypothetical protein
1046	 40.21	0	1069204..1069785	-	193	46907270	mobA	LMOf2365_1059	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1047	 37.86	0	1069766..1070428	-	220	46907271	modC	LMOf2365_1060	-	molybdenum ABC transporter, ATP-binding protein
1048	 38.24	0	1070431..1071102	-	223	46907272	modB	LMOf2365_1061	-	molybdenum ABC transporter, permease protein
1049	 39.17	0	1071206..1071976	+	256	46907273	modA	LMOf2365_1062	-	molybdenum ABC transporter, molybdenum-binding protein
1050	 39.87	0	1072071..1073294	+	407	46907274	moeA	LMOf2365_1063	-	molybdopterin biosynthesis protein MoeA
1051	 37.65	0	1073273..1073758	+	161	46907275	mobB	LMOf2365_1064	-	molybdopterin-guanine dinucleotide biosynthesis protein B
1052	 39.72	0	1073755..1074177	+	140	46907276	moaE	LMOf2365_1065	-	molybdenum cofactor biosynthesis protein E
1053	 38.15	0	1074161..1074409	+	82	46907277	moaD	LMOf2365_1066	-	molybdenum cofactor biosynthesis protein D
1054	 42.03	+1	1074422..1074904	+	160	46907278	moaC	LMOf2365_1067	-	molybdenum cofactor biosynthesis protein C
1055	 38.02	0	1074933..1075934	+	333	46907279	moaA	LMOf2365_1068	-	molybdenum cofactor biosynthesis protein A
1056	 41.10	0	1075969..1076457	-	162	46907280	moaB	LMOf2365_1069	-	molybdenum cofactor biosynthesis protein B
1057	 37.74	0	1076469..1077467	-	332	46907281	moeB	LMOf2365_1070	-	molybdopterin biosynthesis protein MoeB
1058	 37.66	0	1077599..1078153	+	184	46907282	-	LMOf2365_1071	-	hypothetical protein
1059	 39.67	0	1078202..1078753	-	183	46907283	def	LMOf2365_1072	-	peptide deformylase
1060	 40.86	0	1079587..1080702	+	371	46907284	pdhA	LMOf2365_1073	-	pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit
1061	 41.31	0	1080705..1081682	+	325	46907285	pdhB	LMOf2365_1074	-	pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit
1062	 40.37	0	1081793..1083427	+	544	46907286	-	LMOf2365_1075	-	dihydrolipoamide acetyltransferase
1063	 41.88	+1	1083432..1084835	+	467	46907287	-	LMOf2365_1076	-	dihydrolipoamide dehydrogenase
1064	 35.26	0	1085022..1085333	+	103	46907288	-	LMOf2365_1077	-	hypothetical protein
1065	 36.79	0	1085462..1086415	+	317	46907289	-	LMOf2365_1078	-	lactate/malate dehydrogenase family protein
1066	 37.73	0	1086415..1086687	+	90	46907290	-	LMOf2365_1079	-	hypothetical protein
1067	 36.91	0	1086709..1087239	+	176	46907291	-	LMOf2365_1080	-	hypothetical protein
1068	 35.24	0	1087297..1088241	-	314	46907292	-	LMOf2365_1081	-	magnesium transporter CorA family protein
1069	 39.35	0	1088442..1089056	-	204	46907293	-	LMOf2365_1082	-	hypothetical protein
1070	 39.28	0	1089187..1089960	+	257	46907294	-	LMOf2365_1083	-	inositol monophosphatase family protein
1071	 39.10	0	1090152..1091990	+	612	46907295	typA	LMOf2365_1084	-	GTP-binding protein TypA
1072	 35.84	0	1092168..1093043	+	291	46907296	-	LMOf2365_1085	-	hypothetical protein
1073	 33.33	-1	1093075..1093305	-	76	46907297	-	LMOf2365_1086	-	hypothetical protein
1074	 35.82	0	1093511..1093792	+	93	46907298	-	LMOf2365_1087	-	hypothetical protein
1075	 36.89	0	1093968..1095176	+	402	46907299	-	LMOf2365_1088	-	cell cycle protein FtsW
1076	 39.47	0	1095454..1098894	+	1146	46907300	pyc	LMOf2365_1089	-	pyruvate carboxylase
1077	 35.23	0	1099048..1099941	+	297	46907301	-	LMOf2365_1090	-	ABC transporter, substrate-binding protein
1078	 33.46	-1	1100235..1101026	+	263	46907302	-	LMOf2365_1091	-	techoic acid ABC transporter, efflux permease
1079	 33.43	-1	1101039..1102046	+	335	46907303	-	LMOf2365_1092	-	techoic acid ABC transporter, ATP-binding protein, putative
1080	 36.22	0	1102270..1104594	+	774	46907304	-	LMOf2365_1093	-	N-acetylmuramoyl-L-alanine amidase
1081	 31.99	-1	1104657..1106663	-	668	46907305	-	LMOf2365_1094	-	hypothetical protein
1082	 33.74	-1	1106955..1107938	+	327	46907306	-	LMOf2365_1095	-	glycosyl transferase, group 2 family protein
1083	 32.05	-1	1107950..1110052	+	700	46907307	-	LMOf2365_1096	-	hypothetical protein
1084	 33.68	-1	1110083..1112407	+	774	46907308	-	LMOf2365_1097	-	glycosyl transferase, group 2 family protein
1085	 32.05	-1	1112404..1113414	+	336	46907309	-	LMOf2365_1098	-	hypothetical protein
1086	 35.25	0	1113463..1114350	-	295	46907310	galU	LMOf2365_1099	-	UTP-glucose-1-phosphate uridylyltransferase
1087	 34.59	0	1114574..1115287	+	237	46907311	ispD	LMOf2365_1100	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1088	 39.08	0	1115280..1116305	+	341	46907312	-	LMOf2365_1101	-	alcohol dehydrogenase, zinc-dependent
1089	 36.23	0	1116448..1117827	+	459	46907313	-	LMOf2365_1102	-	glycosyl transferase, group 2 family protein
1090	 34.29	-1	1117827..1118981	+	384	46907314	-	LMOf2365_1103	-	teichoic acid biosynthesis domain-containing protein
1091	 36.11	0	1118994..1120145	+	383	46907315	-	LMOf2365_1104	-	teichoic acid biosynthesis protein B, putative
1092	 33.33	-1	1120210..1120593	+	127	46907316	tagD	LMOf2365_1105	-	glycerol-3-phosphate cytidylyltransferase
1093	 38.83	0	1120711..1122201	+	496	46907317	-	LMOf2365_1106	-	nicotinate phosphoribosyltransferase
1094	 42.18	+1	1122213..1123037	+	274	46907318	nadE	LMOf2365_1107	-	NAD synthetase
1095	 37.54	0	1123050..1123358	+	102	46907319	-	LMOf2365_1108	-	hypothetical protein
1096	 43.21	+1	1123418..1123822	+	134	46907320	-	LMOf2365_1109	-	PTS system, IIB component, putative
1097	 43.37	+1	1123963..1125507	+	514	46907321	guaA	LMOf2365_1110	-	bifunctional GMP synthase/glutamine amidotransferase protein
1098	 34.73	0	1125798..1126154	+	118	46907322	-	LMOf2365_1111	-	hypothetical protein
1099	 38.10	0	1126762..1126887	-	41	46907323	-	LMOf2365_1112	-	hypothetical protein
1100	 30.07	-2	1126911..1127798	+	295	46907324	-	LMOf2365_1113	-	ABC transporter, ATP-binding protein
1101	 28.80	-2	1127798..1128547	+	249	46907325	-	LMOf2365_1114	-	ABC transporter, permease protein
1102	 30.50	-2	1128588..1128905	+	105	46907326	-	LMOf2365_1115	-	hypothetical protein
1103	 29.57	-2	1128902..1129777	+	291	46907327	-	LMOf2365_1116	-	hypothetical protein
1104	 28.98	-2	1129785..1130702	+	305	46907328	-	LMOf2365_1117	-	hypothetical protein
1105	 30.37	-2	1130695..1132008	+	437	46907329	-	LMOf2365_1118	-	hypothetical protein
1106	 24.49	-2	1132001..1132588	+	195	46907330	-	LMOf2365_1119	-	CAAX amino terminal protease family protein
1107	 31.65	-1	1132833..1133606	+	257	46907331	-	LMOf2365_1120	-	AraC family transcriptional regulator
1108	 33.05	-1	1133671..1134027	+	118	46907332	-	LMOf2365_1121	-	glyoxalase family protein
1109	 27.38	-2	1134444..1134779	-	111	46907333	-	LMOf2365_1122	-	hypothetical protein
1110	 27.06	-2	1134754..1135566	-	270	46907334	-	LMOf2365_1123	-	hypothetical protein
1111	 37.32	0	1136256..1136606	+	116	46907335	-	LMOf2365_1125	-	hypothetical protein
1112	 35.46	0	1136609..1136749	+	46	46907336	-	LMOf2365_1126	-	hypothetical protein
1113	 26.29	-2	1136761..1137129	+	122	46907337	-	LMOf2365_1127	-	hypothetical protein
1114	 29.76	-2	1137166..1137585	+	139	46907338	-	LMOf2365_1128	-	hypothetical protein
1115	 28.06	-2	1137671..1138144	+	157	46907339	-	LMOf2365_1129	-	hypothetical protein
1116	 32.19	-1	1138134..1138571	+	145	46907340	-	LMOf2365_1130	-	hypothetical protein
1117	 35.99	0	1138975..1139313	+	112	46907341	-	LMOf2365_1131	-	hypothetical protein
1118	 37.84	0	1139331..1139774	+	147	46907342	-	LMOf2365_1132	-	acetyltransferase
1119	 35.09	0	1139774..1140229	+	151	46907343	-	LMOf2365_1133	-	hypothetical protein
1120	 40.14	0	1140243..1141241	-	332	46907344	-	LMOf2365_1134	-	hypothetical protein
1121	 34.51	0	1141238..1141834	-	198	46907345	-	LMOf2365_1135	-	acetyltransferase
1122	 32.36	-1	1141831..1142550	-	239	46907346	-	LMOf2365_1136	-	hypothetical protein
1123	 36.83	0	1142801..1144516	+	571	46907347	-	LMOf2365_1137	-	ABC transporter, ATP-binding/permease protein
1124	 38.25	0	1144518..1146164	+	548	46907348	-	LMOf2365_1138	-	ABC transporter, ATP-binding/permease protein
1125	 36.89	0	1146203..1146511	-	102	46907349	-	LMOf2365_1139	-	hypothetical protein
1126	 31.90	-1	1146579..1146926	+	115	46907350	-	LMOf2365_1140	-	MerR family transcriptional regulator
1127	 33.07	-1	1146951..1148090	+	379	46907351	-	LMOf2365_1141	-	hypothetical protein
1128	 39.49	0	1148209..1148679	+	156	46907352	-	LMOf2365_1142	-	hypothetical protein
1129	 34.02	-1	1148676..1148966	+	96	46907353	-	LMOf2365_1143	-	hypothetical protein
1130	 37.17	0	1149246..1150781	+	511	46907354	-	LMOf2365_1144	-	cell wall surface anchor family protein
1131	 32.47	-1	1150816..1151163	-	115	46907355	-	LMOf2365_1145	-	hypothetical protein
1132	 39.62	0	1151228..1151800	-	190	46907356	clpP-1	LMOf2365_1146	-	ATP-dependent Clp protease proteolytic subunit
1133	 40.20	0	1151931..1152338	-	135	46907357	-	LMOf2365_1147	-	hypothetical protein
37.91	MEAN

3.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.