IslandPathversion 1.0

IslandPath Analysis: Lactococcus lactis subsp. cremoris MG1363



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.99 STD DEV: 3.62
Lactococcus lactis subsp. cremoris MG1363, complete genome - 1..2529478
2434 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
680	 30.50	-1	694246..694527	+	93	125623562	-	llmg_0706	-	hypothetical protein
681	 28.93	-1	694698..695015	-	105	125623563	-	llmg_0707	-	hypothetical protein
682	 30.07	-1	694993..695268	-	91	125623564	-	llmg_0708	-	hypothetical protein
683	 32.46	0	695498..695842	+	114	125623565	-	llmg_0709	-	PadR-like family transcriptional regulator
684	 30.31	-1	695839..696666	+	275	125623566	-	llmg_0710	-	hypothetical protein
685	 36.58	0	696901..697455	+	184	125623567	tnpR	llmg_0711	-	DNA-invertase/resolvase
686	 31.68	-1	697799..698404	-	201	125623568	-	llmg_0712	-	hypothetical protein
687	 30.00	-1	698417..698596	-	59	125623569	-	llmg_0713	-	hypothetical protein
688	 35.95	0	698693..699532	-	279	125623570	tnp981	llmg_0714	-	transposase for insertion sequence element IS981F
689	 32.37	0	699794..700417	+	207	125623571	-	llmg_0715	-	hypothetical protein
690	 30.21	-1	700636..700923	+	95	125623572	-	llmg_0716	-	hypothetical protein
691	 38.03	0	701028..701708	-	226	125623573	tnp946	llmg_0717	-	transposase for insertion sequence element IS946
692	 29.51	-1	702975..703628	+	217	125623574	-	llmg_0718	-	putative nucleotide binding protein
693	 29.29	-1	703621..704781	+	386	125623575	-	llmg_0719	-	ABC transporter substrate-binding protein
694	 37.16	0	704818..705078	+	86	125623576	-	llmg_0720	-	hypothetical protein
695	 36.55	0	705090..705929	+	279	125623577	tnp981	llmg_0721	-	transposase for insertion sequence element IS981G
696	 38.84	0	706170..707441	-	423	125623578	serS	llmg_0722	-	seryl-tRNA synthetase
697	 36.11	0	707840..708199	-	119	125623579	-	llmg_0724	-	hypothetical protein
698	 36.35	0	708350..709045	+	231	125623580	-	llmg_0725	-	hypothetical protein
699	 33.33	0	709070..709453	-	127	125623581	-	llmg_0726	-	hypothetical protein
700	 41.88	+1	709596..710519	-	307	125623582	ptnD	llmg_0727	-	mannose-specific PTS system component IID
701	 46.62	+2	710538..711350	-	270	125623583	ptnC	llmg_0728	-	mannose-specific PTS system component IIC
702	 43.03	+1	711429..712418	-	329	125623584	ptnAB	llmg_0729	-	PTS system, mannose-specific IIAB components
703	 36.27	0	712688..712891	-	67	125623585	fer	llmg_0730	-	ferredoxin
704	 39.38	0	712938..713450	+	170	125623586	-	llmg_0731	-	putative secreted protein
705	 35.75	0	713570..714232	+	220	125623587	cmk	llmg_0732	-	cytidylate kinase
706	 36.14	0	714312..715703	+	463	125623588	-	llmg_0733	-	cell envelope-related transcriptional attenuator
707	 36.71	0	715942..716562	+	206	125623589	-	llmg_0734	-	putative amidase
708	 32.81	0	717923..718498	+	191	125623590	-	llmg_0736	-	hypothetical protein
709	 38.18	0	718629..719495	-	288	125623591	malG	llmg_0737	-	maltose ABC transporter permease protein malG
710	 36.88	0	719501..720883	-	460	125623592	malF	llmg_0738	-	maltose transport system permease protein malF
711	 37.48	0	720962..722191	-	409	125623593	malE	llmg_0739	-	maltose ABC transporter substrate binding protein
712	 36.41	0	722564..724318	+	584	125623594	dexC	llmg_0740	-	neopullulanase
713	 36.53	0	724633..726228	+	531	125623595	dexA	llmg_0741	-	oligo-1,6-alpha-glucosidase
714	 39.93	+1	726255..726860	+	201	125623596	maa	llmg_0742	-	maltose O-acetyltransferase
715	 39.68	+1	726850..728424	+	524	125623597	amyY	llmg_0743	-	alpha-amylase
716	 37.39	0	728467..730092	+	541	125623598	agl	llmg_0744	-	alpha-glucosidase
717	 36.61	0	730115..732370	+	751	125623599	mapA	llmg_0745	-	maltose phosphorylase
718	 36.72	0	732522..733496	+	324	125623600	malR	llmg_0746	-	maltose operon transcriptional repressor
719	 31.69	-1	733674..734342	+	222	125623601	llrF	llmg_0747	-	two-component system regulator llrF
720	 35.59	0	734558..735928	+	456	125623602	kinF	llmg_0748	-	sensor protein kinase kinF
721	 37.41	0	736077..737819	+	580	125623603	dxsB	llmg_0749	-	1-deoxy-D-xylulose-5-phosphate synthase
722	 41.76	+1	737939..738211	+	90	125623604	-	llmg_0750	-	hypothetical protein
723	 37.87	0	738330..739763	+	477	125623605	arb	llmg_0751	-	6-phospho-beta-glucosidase
724	 34.85	0	740024..742729	+	901	125623606	pip	llmg_0752	-	phage infection protein
725	 34.14	0	742828..743568	+	246	125623607	ubiE	llmg_0753	-	ubiquinone/menaquinone biosynthesis methyltransferase
726	 32.85	0	743605..744438	+	277	125623608	-	llmg_0754	-	Rgg family transcriptional regulator
727	 33.59	0	744506..744895	+	129	125623609	-	llmg_0755	-	hypothetical protein
728	 34.30	0	744892..745509	+	205	125623610	-	llmg_0756	-	putative secreted protein
729	 30.65	-1	745499..745759	+	86	125623611	-	llmg_0757	-	hypothetical protein
730	 37.17	0	745928..747466	+	512	125623612	eriC	llmg_0758	-	putative chloride channel protein
731	 33.96	0	747491..748450	-	319	125623613	ubiA	llmg_0759	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
732	 40.17	+1	749121..749720	+	199	125623614	-	llmg_0760	-	putative transglycosylase
733	 36.39	0	749986..750966	-	326	125623615	-	llmg_0761	-	putative oxidoreductase
734	 36.88	0	751263..751883	+	206	125623616	udk	llmg_0762	-	uridine kinase
735	 38.94	0	752099..753079	+	326	125623617	eutD	llmg_0763	-	phosphotransacetylase
736	 33.84	0	753217..753609	+	130	125623618	-	llmg_0764	-	hypothetical protein
737	 38.80	0	753649..754434	-	261	125623619	-	llmg_0765	-	putative hydrolase
738	 37.87	0	754626..756893	+	755	125623620	ftsK	llmg_0766	-	DNA translocase ftsK
739	 34.72	0	756890..757468	+	192	125623621	-	llmg_0767	-	hypothetical protein
740	 33.23	0	757470..758474	+	334	125623622	holA	llmg_0768	-	DNA polymerase III subunit delta
741	 35.40	0	758531..758917	+	128	125623623	-	llmg_0769	-	putative DivIVA cell division initiation protein
742	 37.92	0	759553..760707	+	384	125623624	-	llmg_0771	-	putative N6-adenine-specific DNA methylase
743	 36.37	0	760889..762898	+	669	125623625	-	llmg_0772	-	hypothetical protein
744	 38.02	0	763002..764090	-	362	125623626	pepQ	llmg_0774	-	proline dipeptidase
745	 36.34	0	764304..765302	+	332	125623627	ccpA	llmg_0775	-	catabolite control protein A
746	 36.34	0	765436..766401	+	321	125623628	trxB2	llmg_0776	-	TrxB2 protein
747	 35.29	0	766699..767259	+	186	125623629	-	llmg_0777	-	hypothetical protein
748	 35.99	0	767303..769633	+	776	125623630	mutS	llmg_0778	-	DNA mismatch repair protein mutS
749	 35.56	0	769730..770044	+	104	125623631	trxA	llmg_0779	-	thioredoxin
750	 32.35	-1	770287..770490	+	67	125623632	-	llmg_0781	-	hypothetical protein
751	 34.78	0	770763..771452	+	229	125623633	aroD	llmg_0782	-	3-dehydroquinate dehydratase
752	 38.04	0	771667..772962	+	431	125623634	purB	llmg_0783	-	adenylosuccinate lyase
753	 35.57	0	773097..774080	+	327	125623635	rbsR	llmg_0784	-	ribose operon repressor
754	 36.92	0	774091..775011	+	306	125623636	rbsK	llmg_0785	-	ribokinase
755	 32.83	0	775016..775414	+	132	125623637	rbsD	llmg_0786	-	D-ribose pyranase
756	 36.47	0	775445..776911	+	488	125623638	rbsD	llmg_0787	-	ribose ABC transporter permease protein RbsD
757	 38.19	0	776908..777855	+	315	125623639	rbsC	llmg_0788	-	ribose transport system permease protein RbsC
758	 36.31	0	777867..778841	+	324	125623640	rbsB	llmg_0789	-	ribose ABC transporter substrate binding protein RbsB
759	 27.69	-2	779032..780165	-	377	125623641	ps301	llmg_0790	-	putative integrase
760	 33.33	0	780291..780917	-	208	125623642	ps302	llmg_0791	-	hypothetical protein
761	 32.88	0	780974..781411	-	145	125623643	ps303	llmg_0792	-	hypothetical protein
762	 33.53	0	781408..781905	-	165	125623644	ps304	llmg_0793	-	hypothetical protein
763	 32.10	-1	782307..783116	-	269	125623645	ps305	llmg_0794	-	hypothetical protein
764	 32.14	-1	783270..783521	+	83	125623646	ps306	llmg_0795	-	hypothetical protein
765	 31.51	-1	783536..783754	+	72	125623647	ps307	llmg_0796	-	hypothetical protein
766	 34.45	0	783764..784477	+	237	125623648	ps308	llmg_0797	-	hypothetical protein
767	 34.60	0	784490..784726	+	78	125623649	ps309	llmg_0798	-	hypothetical protein
768	 29.91	-1	784880..785113	+	77	125623650	ps310	llmg_0800	-	hypothetical protein
769	 35.13	0	785068..785346	-	92	125623651	ps311	llmg_0801	-	hypothetical protein
770	 34.94	0	785452..785700	+	82	125623652	ps312	llmg_0802	-	hypothetical protein
771	 29.94	-1	785697..785873	+	58	125623653	ps313	llmg_0803	-	putative transcription regulator
772	 35.07	0	785978..786496	+	172	125623654	ps314	llmg_0804	-	hypothetical protein
773	 35.56	0	786505..787224	+	239	125623655	ps315	llmg_0805	-	hypothetical protein
774	 36.31	0	787224..787727	+	167	125623656	ps316	llmg_0806	-	hypothetical protein
775	 29.40	-1	787863..788702	+	279	125623657	ps317	llmg_0807	-	putative replisome organiser protein
776	 34.92	0	788712..789596	+	294	125623658	ps318	llmg_0808	-	hypothetical protein
777	 37.58	0	789593..789757	+	54	125623659	ps319	llmg_0810	-	hypothetical protein
778	 35.80	0	789681..790166	+	161	125623660	ps320	llmg_0811	-	hypothetical protein
779	 32.50	0	790167..790406	+	79	125623661	ps321	llmg_0812	-	hypothetical protein
35.99	MEAN

3.62	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.