IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
742	 64.66	0	756703..757050	+	115	114797676	-	HNE_0748	-	hypothetical protein
743	 62.47	0	757148..757552	+	134	114798927	-	HNE_0749	-	putative lipoprotein
744	 69.47	+2	757679..757999	+	106	114799697	-	HNE_0750	-	hypothetical protein
745	 56.02	-1	758071..758427	+	118	114798497	-	HNE_0751	-	hypothetical protein
746	 62.73	0	758558..760159	+	533	114798284	-	HNE_0752	-	putative peptide chain release factor 3
747	 65.63	0	760128..760610	-	160	114799424	-	HNE_0753	-	hypothetical protein
748	 64.20	0	760691..762517	-	608	114799256	-	HNE_0754	-	ABC transporter, ATP-binding protein
749	 63.11	0	762551..763225	-	224	114800237	rsuA	HNE_0755	-	ribosomal small subunit pseudouridine synthase A
750	 62.25	0	763233..764273	-	346	114797404	-	HNE_0756	-	putative methyltransferase
751	 65.13	0	764335..765243	-	302	114798177	-	HNE_0757	-	putative lipoprotein
752	 63.23	0	765360..766610	-	416	114798967	-	HNE_0758	-	acetyl-CoA acetyltransferase
753	 61.43	0	767029..767448	+	139	114799024	-	HNE_0759	-	TadE-like family protein
754	 64.07	0	767450..769180	+	576	114799760	-	HNE_0760	-	hypothetical protein
755	 64.43	0	769227..770387	-	386	114798754	dnaJ	HNE_0761	-	chaperone protein DnaJ
756	 65.82	+1	770487..771785	-	432	114799659	-	HNE_0762	-	hypothetical protein
757	 66.89	+1	771833..772708	+	291	114797084	-	HNE_0763	-	tetrapyrrole methylase family protein
758	 68.56	+1	772698..773066	+	122	114797099	-	HNE_0764	-	hypothetical protein
759	 62.37	0	773212..774978	+	588	114797969	-	HNE_0765	-	hypothetical protein
760	 64.10	0	774989..776116	+	375	114799183	-	HNE_0766	-	glycosyl transferase, group 2
761	 65.38	0	776126..776593	-	155	114799964	-	HNE_0767	-	cytochrome c family protein
762	 65.09	0	776708..778801	+	697	114798595	-	HNE_0768	-	1A family penicillin-binding protein
763	 61.79	0	778903..779886	-	327	114799344	-	HNE_0769	-	putative diguanylate cyclase
764	 62.89	0	780195..780776	+	193	114797253	-	HNE_0770	-	NnrU family protein
765	 64.61	0	780833..781660	+	275	114797775	panB	HNE_0771	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
766	 65.27	0	781740..782456	+	238	114799082	-	HNE_0772	-	hypothetical protein
767	 63.56	0	782453..783802	+	449	114798096	-	HNE_0773	-	PQQ repeat-containing protein
768	 63.14	0	783855..785387	+	510	114798294	engA	HNE_0774	-	GTP-binding protein EngA
769	 55.00	-1	785452..786522	-	356	114797309	-	HNE_0775	-	mannose-1-phosphate guanylyltransferase
770	 61.34	0	786610..788541	-	643	114799988	cysNC	HNE_0776	-	sulfate adenylyltransferase, large subunit/adenylylsulfate kinase
771	 62.51	0	788541..789527	-	328	114799213	cysD	HNE_0777	-	sulfate adenylyltransferase subunit 2
772	 63.49	0	789693..791519	+	608	114800082	glmS	HNE_0778	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
773	 54.30	-2	791573..792154	+	193	114799033	rfbC	HNE_0779	-	dTDP-4-dehydrorhamnose 3,5-epimerase
774	 61.84	0	792151..793041	+	296	114798649	rfbD	HNE_0780	-	dTDP-4-dehydrorhamnose reductase
775	 56.59	-1	793156..793989	+	277	114797221	-	HNE_0781	-	hypothetical protein
776	 57.13	-1	793956..795161	-	401	114797227	-	HNE_0782	-	N-acylglucosamine 2-epimerase
777	 62.25	0	795428..796582	+	384	114799993	-	HNE_0783	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
778	 50.23	-2	796755..796973	-	72	114800368	-	HNE_0784	-	DNA-binding protein
779	 61.73	0	797474..798142	+	222	114797997	-	HNE_0785	-	ECF subfamily RNA polymerase sigma factor
780	 62.77	0	798390..799571	-	393	114798411	metK	HNE_0786	-	S-adenosylmethionine synthetase
781	 62.35	0	799594..800451	-	285	114797552	purU	HNE_0787	-	formyltetrahydrofolate deformylase
782	 61.42	0	800471..801880	-	469	114798407	ahcY	HNE_0788	-	S-adenosyl-L-homocysteine hydrolase
783	 62.79	0	801993..802868	-	291	114797641	rfbA	HNE_0789	-	glucose-1-phosphate thymidylyltransferase
784	 60.56	0	802980..804077	-	365	114799940	rfbB	HNE_0790	-	dTDP-glucose 4,6-dehydratase
785	 56.74	-1	804078..804470	-	130	114798886	-	HNE_0791	-	putative dTDP-4-dehydrorhamnose 3,5-epimerase
786	 56.88	-1	804821..806005	+	394	114798947	-	HNE_0792	-	putative glycosyl transferase
787	 54.91	-1	806469..807446	+	325	114798249	gmd	HNE_0793	-	GDP-mannose 4,6-dehydratase
788	 56.31	-1	807479..808453	+	324	114797456	-	HNE_0794	-	putative GDP-6-deoxy-D-lyxo-4-hexulose reductase
789	 52.58	-2	808521..809315	+	264	114800250	-	HNE_0795	-	lipopolysaccharide ABC transporter, permease protein
790	 50.64	-2	809312..810565	+	417	114799437	-	HNE_0796	-	lipopolysaccharide ABC transporter, ATP-binding protein
791	 51.93	-2	810562..811959	+	465	114798665	-	HNE_0797	-	FkbM family methyltransferase
792	 50.48	-2	812047..814221	-	724	114797898	-	HNE_0798	-	hypothetical protein
793	 49.40	-2	814238..815158	-	306	114799784	-	HNE_0799	-	hypothetical protein
794	 51.64	-2	815165..815803	-	212	114798982	-	HNE_0800	-	3-demethylubiquinone-9 3-methyltransferase domain-containing protein
795	 46.90	-2	815822..816772	-	316	114798217	-	HNE_0801	-	glycosyl transferase, group 2 family protein
796	 46.93	-2	818133..820280	+	715	114799742	-	HNE_0803	-	hypothetical protein
797	 52.22	-2	820414..824136	-	1240	114799110	-	HNE_0804	-	putative mannosyltransferase
798	 56.99	-1	824692..825735	-	347	114798009	-	HNE_0805	-	glycosyl transferase, group 2 family protein
799	 60.33	0	825754..826605	-	283	114797175	kdsA	HNE_0806	-	2-dehydro-3-deoxyphosphooctonate aldolase
800	 59.35	0	827102..827566	+	154	114800116	-	HNE_0807	-	hypothetical protein
801	 57.18	-1	827714..828103	-	129	114799321	-	HNE_0808	-	hypothetical protein
802	 60.03	0	828265..829605	+	446	114798494	-	HNE_0809	-	acyl-CoA dehydrogenase family protein
803	 62.56	0	829662..831026	-	454	114800287	tnaA	HNE_0810	-	tryptophanase
804	 60.44	0	831075..833033	+	652	114799965	-	HNE_0811	-	hypothetical protein
805	 62.08	0	833040..834020	-	326	114798051	-	HNE_0812	-	oxidoreductase, NAD-binding
806	 67.14	+1	834208..834633	+	141	114797297	-	HNE_0813	-	hypothetical protein
807	 62.37	0	834705..834983	+	92	114800053	-	HNE_0814	-	hypothetical protein
808	 60.03	0	834989..838228	-	1079	114800248	-	HNE_0815	-	AcrB/AcrD/AcrF family protein
809	 62.29	0	838225..839343	-	372	114799367	-	HNE_0816	-	RND family efflux transporter MFP subunit
810	 65.40	0	839464..840963	-	499	114797830	-	HNE_0817	-	putative 6-aminohexanoate-cyclic-dimer hydrolase
811	 63.87	0	841126..841875	+	249	114798580	-	HNE_0818	-	hemolysin A
812	 65.10	0	841876..842451	-	191	114799835	-	HNE_0819	-	putative lipoprotein
813	 64.56	0	842544..843443	-	299	114799517	-	HNE_0820	-	hypothetical protein
814	 62.84	0	843453..844550	+	365	114798952	-	HNE_0821	-	hypothetical protein
815	 58.48	0	844701..845201	+	166	114799703	-	HNE_0822	-	hypothetical protein
816	 65.20	0	845285..846376	-	363	114797430	aroC	HNE_0823	-	chorismate synthase
817	 66.36	+1	846461..847120	+	219	114798246	pdxH	HNE_0824	-	pyridoxamine 5'-phosphate oxidase
818	 65.11	0	847137..847586	-	149	114798862	-	HNE_0825	-	hypothetical protein
819	 61.20	0	847870..848253	+	127	114799860	-	HNE_0826	-	hypothetical protein
820	 65.61	0	848319..849167	-	282	114797643	-	HNE_0827	-	glycerophosphoryl diester phosphodiesterase family protein
821	 62.42	0	849439..851064	+	541	114798331	alkK	HNE_0828	-	putative acyl-CoA synthetase
822	 64.94	0	851073..851420	+	115	114799627	-	HNE_0829	-	hypothetical protein
823	 68.65	+1	851485..852393	+	302	114799715	-	HNE_0830	-	hypothetical protein
824	 64.98	0	852397..852870	-	157	114799159	-	HNE_0831	-	putative lipoprotein
825	 64.36	0	853007..853483	-	158	114798113	-	HNE_0832	-	thioesterase family protein
826	 62.37	0	853480..853851	-	123	114798492	csaA	HNE_0833	-	export-related chaperone CsaA
827	 63.02	0	853851..854618	-	255	114800132	-	HNE_0834	-	short chain dehydrogenase/reductase family oxidoreductase
828	 71.32	+2	854792..855199	+	135	114800502	-	HNE_0835	-	hypothetical protein
829	 63.17	0	855275..857278	+	667	114799503	-	HNE_0836	-	TonB-dependent receptor
830	 63.43	0	857385..857879	+	164	114798093	-	HNE_0837	-	YCII domain-containing protein
831	 64.08	0	857889..859553	-	554	114797174	-	HNE_0838	-	hypothetical protein
832	 61.75	0	859665..860498	+	277	114798406	-	HNE_0839	-	fumarylacetoacetate hydrolase family protein
833	 62.98	0	860733..862088	+	451	114797619	-	HNE_0840	-	EAL domain-containing protein
834	 69.11	+1	862167..862739	+	190	114799049	-	HNE_0841	-	putative lipoprotein
835	 66.31	+1	862787..863638	+	283	114798257	-	HNE_0842	-	HAD family hydrolase
836	 61.81	0	863744..864175	+	143	114797881	-	HNE_0843	-	MaoC domain-containing protein
837	 67.10	+1	864175..865101	+	308	114799780	ribF	HNE_0844	-	riboflavin biosynthesis protein RibF
838	 61.20	0	865245..865976	-	243	114799511	-	HNE_0846	-	hypothetical protein
839	 59.96	0	865272..865823	+	183	114798708	-	HNE_0845	-	hypothetical protein
840	 60.86	0	866096..866560	+	154	114800046	-	HNE_0847	-	hypothetical protein
841	 60.16	0	866600..866722	-	40	114800154	-	HNE_0848	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.