IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3340	 63.85	0	3546307..3546696	+	129	114797487	-	HNE_3401	-	hypothetical protein
3341	 59.87	0	3546911..3547381	+	156	114800276	-	HNE_3402	-	hypothetical protein
3342	 57.87	-1	3547412..3548002	-	196	114798839	phaR	HNE_3403	-	polyhydroxyalkanoate synthesis repressor PhaR
3343	 60.61	0	3548159..3548884	+	241	114798054	phbB	HNE_3404	-	acetoacetyl-CoA reductase
3344	 66.00	+1	3548996..3549445	-	149	114798676	-	HNE_3405	-	hypothetical protein
3345	 60.44	0	3549445..3550215	-	256	114797885	-	HNE_3406	-	putative hydroxyacylglutathione hydrolase
3346	 68.28	+1	3550272..3551015	+	247	114800073	-	HNE_3407	-	hypothetical protein
3347	 61.74	0	3551080..3551424	+	114	114799395	-	HNE_3408	-	nitrogen regulatory protein P-II
3348	 64.66	0	3551484..3552680	-	398	114798169	-	HNE_3409	-	M23 family peptidase
3349	 64.71	0	3552680..3553345	-	221	114797716	-	HNE_3410	-	putative lipoprotein
3350	 67.27	+1	3553342..3554001	-	219	114797973	-	HNE_3411	-	hypothetical protein
3351	 64.29	0	3554003..3556321	-	772	114799165	-	HNE_3412	-	subtilase family protein
3352	 59.65	0	3556432..3556887	-	151	114798107	-	HNE_3413	-	hypothetical protein
3353	 65.64	0	3557019..3557504	+	161	114800508	-	HNE_3414	-	pentapeptide repeat-containing protein
3354	 67.33	+1	3557539..3560412	+	957	114800036	-	HNE_3415	-	putative helicase
3355	 66.32	+1	3560426..3560713	+	95	114799054	-	HNE_3416	-	S4 domain-containing protein
3356	 64.21	0	3560710..3561156	+	148	114797520	-	HNE_3417	-	hypothetical protein
3357	 56.43	-1	3561255..3561596	+	113	114799500	fdxA	HNE_3418	-	ferredoxin
3358	 59.81	0	3561882..3562406	+	174	114799783	-	HNE_3419	-	CarD family transcriptional regulator
3359	 63.29	0	3562565..3563305	+	246	114797093	-	HNE_3420	-	hypothetical protein
3360	 62.59	0	3563395..3563811	+	138	114797812	-	HNE_3421	-	hypothetical protein
3361	 58.97	0	3563928..3564044	-	38	114798583	-	HNE_3422	-	hypothetical protein
3362	 62.59	0	3564043..3564312	+	89	114799056	-	HNE_3423	-	hypothetical protein
3363	 64.13	0	3564320..3565501	-	393	114800044	-	HNE_3424	-	alpha/beta fold family hydrolase
3364	 58.75	0	3565595..3566011	-	138	114797901	-	HNE_3425	-	glyoxalase family protein
3365	 63.16	0	3566093..3566548	+	151	114798478	soxR	HNE_3426	-	redox-sensitive transcriptional activator SoxR
3366	 62.33	0	3566555..3568123	-	522	114799539	fcs5	HNE_3427	-	feruloyl-CoA synthetase
3367	 65.61	0	3568322..3569170	+	282	114800268	-	HNE_3428	-	hypothetical protein
3368	 67.60	+1	3569216..3570502	+	428	114799184	proA	HNE_3429	-	gamma-glutamyl phosphate reductase
3369	 63.61	0	3570499..3571086	+	195	114798022	nadD	HNE_3430	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
3370	 63.97	0	3571083..3571823	+	246	114797177	-	HNE_3431	-	putative molybdopterin biosynthesis protein MoeB
3371	 63.67	0	3571899..3572900	+	333	114800369	-	HNE_3432	-	alpha/beta fold family hydrolase
3372	 63.73	0	3572930..3573916	-	328	114798669	gyaR	HNE_3433	-	glyoxylate reductase
3373	 68.57	+1	3574054..3574632	+	192	114797532	-	HNE_3434	-	hypothetical protein
3374	 63.78	0	3574690..3575244	+	184	114800283	fabZ	HNE_3435	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
3375	 64.59	0	3575314..3576132	+	272	114799930	-	HNE_3436	-	enoyl-[acyl-carrier-protein] reductase
3376	 65.12	0	3576377..3576634	+	85	114798694	-	HNE_3437	-	hypothetical protein
3377	 64.67	0	3576689..3577138	+	149	114799628	-	HNE_3438	-	hypothetical protein
3378	 67.15	+1	3577889..3578716	-	275	114797873	-	HNE_3439	-	SCP-like extracellular family protein
3379	 61.43	0	3578779..3579465	-	228	114800418	-	HNE_3440	-	putative uridine kinase
3380	 60.74	0	3579558..3581699	-	713	114798182	pnpA	HNE_3441	-	polynucleotide phosphorylase/polyadenylase
3381	 54.81	-1	3581768..3582037	-	89	114797457	rpsO	HNE_3442	-	ribosomal protein S15
3382	 62.50	0	3582083..3582202	-	39	114797473	-	HNE_3443	-	hypothetical protein
3383	 61.25	0	3582333..3582701	+	122	114799721	-	HNE_3444	-	putative lipoprotein
3384	 68.79	+1	3582725..3583195	+	156	114799010	-	HNE_3445	-	hypothetical protein
3385	 67.41	+1	3583402..3584340	+	312	114798666	-	HNE_3446	-	ISHne3, transposase
3386	 62.03	0	3585322..3586614	-	430	114799060	mdeA	HNE_3448	-	methionine gamma-lyase
3387	 63.89	0	3586724..3587515	+	263	114798157	-	HNE_3449	-	thermonuclease family protein
3388	 62.27	0	3587521..3588408	-	295	114798150	-	HNE_3450	-	putative alternative sigma factor RpoH
3389	 63.99	0	3588598..3589083	+	161	114798968	-	HNE_3451	-	hypothetical protein
3390	 65.32	0	3589080..3589526	+	148	114799752	-	HNE_3452	-	hypothetical protein
3391	 61.99	0	3589530..3590597	-	355	114797906	-	HNE_3453	-	citrate synthase 2
3392	 66.22	+1	3590675..3591805	+	376	114797889	-	HNE_3454	-	citrate synthase family protein
3393	 62.46	0	3591807..3593780	-	657	114798491	tkt	HNE_3455	-	transketolase
3394	 65.40	0	3593866..3594180	+	104	114799291	-	HNE_3456	-	hypothetical protein
3395	 65.71	0	3594167..3594478	+	103	114800282	-	HNE_3457	-	hypothetical protein
3396	 63.28	0	3594475..3595182	+	235	114800140	-	HNE_3458	-	hypothetical protein
3397	 59.62	0	3595196..3595408	+	70	114800379	-	HNE_3459	-	hypothetical protein
3398	 64.05	0	3595428..3596000	+	190	114797243	-	HNE_3460	-	putative ATP:cob(I)alamin adenosyltransferase
3399	 62.10	0	3596004..3596966	-	320	114798378	-	HNE_3461	-	metallo-beta-lactamase family protein
3400	 67.26	+1	3597034..3599718	-	894	114800374	-	HNE_3462	-	hypothetical protein
3401	 63.14	0	3599697..3600971	-	424	114799974	lysA	HNE_3463	-	diaminopimelate decarboxylase
3402	 64.47	0	3600984..3601211	-	75	114800174	-	HNE_3464	-	putative lipoprotein
3403	 62.52	0	3601452..3602849	-	465	114798021	argH	HNE_3465	-	argininosuccinate lyase
3404	 61.93	0	3602896..3603486	+	196	114799212	-	HNE_3466	-	putative thiol:disulfide interchange protein
3405	 64.18	0	3603811..3604293	+	160	114799390	-	HNE_3467	-	hypothetical protein
3406	 63.43	0	3604300..3604794	-	164	114799034	-	HNE_3468	-	putative nuclease
3407	 58.82	0	3604911..3605789	-	292	114797883	-	HNE_3469	-	3-hydroxybutyryl-CoA dehydrogenase
3408	 60.75	0	3605943..3606872	-	309	114797076	etfA	HNE_3470	-	electron transfer flavoprotein, alpha subunit
3409	 61.04	0	3606872..3607618	-	248	114799429	eftB	HNE_3471	-	electron transfer flavoprotein, beta subunit
3410	 65.55	0	3607747..3609000	-	417	114800401	-	HNE_3472	-	putative folylpolyglutamate synthase
3411	 62.28	0	3608997..3609977	-	326	114797289	accD	HNE_3473	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
3412	 61.84	0	3610008..3610835	-	275	114798201	trpA	HNE_3474	-	tryptophan synthase, alpha subunit
3413	 58.88	0	3610838..3611158	-	106	114798841	cutA	HNE_3475	-	divalent-cation tolerance protein CutA
3414	 62.05	0	3611155..3612366	-	403	114799821	trpB	HNE_3476	-	tryptophan synthase subunit beta
3415	 63.68	0	3612405..3613040	-	211	114797372	trpF	HNE_3477	-	N-(5'phosphoribosyl)anthranilate isomerase
3416	 60.52	0	3613303..3613953	+	216	114797543	msrA2	HNE_3479	-	methionine-S-sulfoxide reductase
3417	 64.44	0	3613969..3614958	-	329	114800216	-	HNE_3480	-	hypothetical protein
3418	 63.00	0	3615111..3615956	+	281	114799552	-	HNE_3481	-	glutamyl-Q tRNA(Asp) synthetase
3419	 64.84	0	3615953..3616885	+	310	114797206	-	HNE_3482	-	putative transporter
3420	 64.47	0	3616953..3618542	+	529	114799748	-	HNE_3483	-	alkaline phosphatase
3421	 63.27	0	3618551..3618991	-	146	114799141	-	HNE_3484	-	hypothetical protein
3422	 66.42	+1	3619094..3619909	+	271	114798593	-	HNE_3485	-	DNA-binding protein
3423	 63.40	0	3619995..3621095	+	366	114797810	-	HNE_3486	-	alcohol dehydrogenase, class III
3424	 60.06	0	3621155..3621865	+	236	114799952	-	HNE_3487	-	hypothetical protein
3425	 61.24	0	3621862..3622911	-	349	114799261	pyrD	HNE_3488	-	dihydroorotate oxidase
3426	 64.35	0	3622908..3623252	-	114	114800306	-	HNE_3489	-	hypothetical protein
3427	 69.07	+1	3623297..3625255	-	652	114799277	-	HNE_3490	-	hypothetical protein
3428	 61.92	0	3625430..3626671	+	413	114799175	argG	HNE_3491	-	argininosuccinate synthase
3429	 66.13	+1	3626752..3627315	-	187	114798272	-	HNE_3492	-	hypothetical protein
3430	 65.16	0	3627686..3629677	-	663	114797802	cobT	HNE_3493	-	cobaltochelatase, CobT subunit
3431	 61.28	0	3629708..3630691	-	327	114799817	cobS	HNE_3494	-	cobaltochelatase, CobS subunit
3432	 63.79	0	3630848..3632131	+	427	114799305	-	HNE_3495	-	hypothetical protein
3433	 62.14	0	3632144..3632761	-	205	114798714	msrA3	HNE_3496	-	methionine-S-sulfoxide reductase
3434	 62.62	0	3632878..3634533	-	551	114799630	-	HNE_3497	-	putative lipoprotein
3435	 58.60	0	3634765..3635049	-	94	114799496	rpmB	HNE_3498	-	50S ribosomal protein
3436	 64.32	0	3635328..3636221	+	297	114800078	-	HNE_3499	-	hypothetical protein
3437	 66.96	+1	3636243..3637268	-	341	114799098	-	HNE_3500	-	RluA family pseudouridine synthase
3438	 65.66	0	3637362..3639047	+	561	114798024	phoD2	HNE_3501	-	alkaline phosphatase
3439	 67.33	+1	3639044..3639802	-	252	114797252	-	HNE_3502	-	oxidoreductase-like protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.