IslandPathversion 1.0

IslandPath Analysis: Hyphomonas neptunium ATCC 15444



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.10 STD DEV: 3.66
Hyphomonas neptunium ATCC 15444, complete genome - 1..3705021
3505 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2788	 60.91	0	2999348..2999764	-	138	114798200	rplP	HNE_2844	-	50S ribosomal protein L16
2789	 61.38	0	2999768..3000505	-	245	114797822	rpsC	HNE_2845	-	ribosomal protein S3
2790	 61.54	0	3000505..3000894	-	129	114799750	rplV	HNE_2846	-	50S ribosomal protein L22
2791	 56.27	-1	3000897..3001175	-	92	114799147	rpsS	HNE_2847	-	ribosomal protein S19
2792	 61.49	0	3001194..3002024	-	276	114798100	rplB	HNE_2848	-	50S ribosomal protein L2
2793	 53.67	-2	3002043..3002342	-	99	114799096	rplW	HNE_2849	-	ribosomal protein L23
2794	 60.47	0	3002342..3002986	-	214	114799746	rplD	HNE_2850	-	50S ribosomal protein L4
2795	 61.26	0	3002986..3003744	-	252	114797091	rplC	HNE_2851	-	ribosomal protein L3
2796	 59.50	0	3003744..3004064	-	106	114798629	rpsJ	HNE_2852	-	ribosomal protein S10
2797	 62.05	0	3004398..3005588	-	396	114799428	tuf2	HNE_2853	-	elongation factor Tu
2798	 60.08	0	3005625..3007748	-	707	114800238	fusA	HNE_2854	-	elongation factor G
2799	 60.30	0	3007836..3008306	-	156	114799363	rpsG	HNE_2855	-	30S ribosomal protein S7
2800	 61.56	0	3008322..3008693	-	123	114800161	rpsL	HNE_2856	-	30S ribosomal protein S12
2801	 61.75	0	3009131..3013339	-	1402	114798314	rpoC	HNE_2857	-	DNA-directed RNA polymerase, beta' subunit
2802	 61.11	0	3013454..3017590	-	1378	114799111	rpoB	HNE_2858	-	DNA-directed RNA polymerase subunit beta
2803	 56.61	-1	3017745..3018122	-	125	114798365	rplL	HNE_2859	-	ribosomal protein L7/L12
2804	 59.88	0	3018181..3018696	-	171	114799263	rplJ	HNE_2860	-	ribosomal protein L10
2805	 56.75	-1	3019117..3019953	+	278	114800263	-	HNE_2861	-	hypothetical protein
2806	 61.66	0	3019963..3020880	-	305	114797871	-	HNE_2862	-	hypothetical protein
2807	 59.98	0	3020155..3021051	+	298	114797065	-	HNE_2863	-	hypothetical protein
2808	 60.78	0	3021063..3021758	-	231	114798066	rplA	HNE_2864	-	50S ribosomal protein L1
2809	 59.51	0	3021764..3022210	-	148	114799038	rplK	HNE_2865	-	ribosomal protein L11
2810	 63.72	0	3022411..3023190	-	259	114800106	-	HNE_2866	-	M48 family peptidase
2811	 65.07	0	3023529..3023903	+	124	114799225	-	HNE_2867	-	hypothetical protein
2812	 68.03	+1	3024129..3024716	+	195	114798598	-	HNE_2868	-	hypothetical protein
2813	 66.24	+1	3024688..3026091	-	467	114800065	-	HNE_2869	-	hypothetical protein
2814	 63.11	0	3026220..3027035	+	271	114799377	-	HNE_2870	-	RNA methyltransferase
2815	 66.44	+1	3027032..3027928	+	298	114800149	-	HNE_2871	-	hypothetical protein
2816	 65.69	0	3027965..3028474	-	169	114797875	-	HNE_2872	-	putative lipoprotein
2817	 59.74	0	3028704..3031820	-	1038	114798601	-	HNE_2873	-	TonB-dependent receptor
2818	 62.30	0	3032384..3034009	-	541	114799455	oppA	HNE_2874	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
2819	 64.07	0	3034121..3034621	+	166	114800192	-	HNE_2875	-	hypothetical protein
2820	 62.33	0	3034637..3035536	-	299	114798441	-	HNE_2876	-	metallo-beta-lactamase family protein
2821	 59.42	0	3035570..3036508	-	312	114799472	-	HNE_2877	-	hypothetical protein
2822	 65.45	0	3036624..3037034	-	136	114799348	-	HNE_2878	-	hypothetical protein
2823	 63.89	0	3037168..3038139	+	323	114797841	oppB	HNE_2879	-	oligopeptide ABC transporter, permease protein
2824	 65.46	0	3038139..3039050	+	303	114797484	oppC	HNE_2880	-	oligopeptide ABC transporter, permease protein
2825	 67.84	+1	3039149..3039913	+	254	114798212	-	HNE_2881	-	alpha/beta fold family hydrolase
2826	 64.24	0	3039916..3040491	-	191	114798851	-	HNE_2882	-	glyoxalase family protein
2827	 64.01	0	3040899..3041687	-	262	114799905	-	HNE_2883	-	transglutaminase family protein
2828	 63.95	0	3041912..3042757	+	281	114798622	-	HNE_2884	-	putative neutral zinc metallopeptidase
2829	 63.80	0	3042809..3044098	+	429	114799633	-	HNE_2885	-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein
2830	 61.07	0	3044119..3044868	-	249	114799239	-	HNE_2886	-	hypothetical protein
2831	 58.02	-1	3044948..3045583	-	211	114798423	-	HNE_2887	-	hypothetical protein
2832	 60.47	0	3045686..3047686	-	666	114797662	rpoD	HNE_2888	-	RNA polymerase sigma factor RpoD
2833	 64.76	0	3047761..3049644	-	627	114799204	dnaG	HNE_2889	-	DNA primase
2834	 59.03	0	3049783..3050568	-	261	114799941	-	HNE_2890	-	hypothetical protein
2835	 65.17	0	3050657..3051124	-	155	114797362	-	HNE_2891	-	hypothetical protein
2836	 63.39	0	3051313..3052473	+	386	114797494	carA	HNE_2892	-	carbamoyl-phosphate synthase, small subunit
2837	 62.04	0	3052527..3053153	-	208	114798879	dxnH	HNE_2893	-	3-oxoadipate CoA-succinyl transferase, beta subunit
2838	 61.86	0	3053153..3053860	-	235	114799898	dxnG	HNE_2894	-	3-oxoadipate CoA-succinyl transferase, alpha subunit
2839	 58.48	0	3053879..3054391	-	170	114799761	-	HNE_2895	-	hypothetical protein
2840	 63.71	0	3054544..3055557	-	337	114797317	-	HNE_2896	-	fumarylacetoacetate hydrolase family protein
2841	 54.60	-2	3055580..3056209	-	209	114798664	-	HNE_2897	-	hypothetical protein
2842	 58.01	-1	3055949..3056179	+	76	114800074	-	HNE_2898	-	hypothetical protein
2843	 60.66	0	3056249..3056797	-	182	114797531	-	HNE_2899	-	glyoxalase family protein
2844	 58.86	0	3056797..3057897	-	366	114798568	hppD	HNE_2900	-	4-hydroxyphenylpyruvate dioxygenase
2845	 62.92	0	3057970..3058449	+	159	114799037	-	HNE_2901	-	MarR family transcriptional regulator
2846	 59.62	0	3058665..3059033	+	122	114799584	-	HNE_2902	-	hypothetical protein
2847	 64.32	0	3059132..3060070	-	312	114800555	-	HNE_2903	-	alpha/beta fold family hydrolase
2848	 61.11	0	3060109..3060234	-	41	114799764	-	HNE_2904	-	hypothetical protein
2849	 61.48	0	3060432..3060797	+	121	114798097	-	HNE_2905	-	BlaI/MecI/CopY family transcriptional regulator
2850	 63.84	0	3060794..3062914	+	706	114798924	-	HNE_2906	-	M56 family peptidase
2851	 63.09	0	3062984..3063430	+	148	114800102	-	HNE_2907	-	putative lipoprotein
2852	 62.73	0	3063449..3064261	+	270	114799298	-	HNE_2908	-	3-deoxy-manno-octulosonate cytidylyltransferase
2853	 64.83	0	3064266..3064865	+	199	114798766	-	HNE_2909	-	phosphoglycerate mutase family protein
2854	 63.63	0	3064870..3067335	-	821	114797754	pleC	HNE_2910	-	non-motile and phage-resistance protein
2855	 63.50	0	3067367..3069988	-	873	114799938	pepN	HNE_2911	-	aminopeptidase N
2856	 70.22	+2	3070095..3070460	+	121	114799384	-	HNE_2912	-	hypothetical protein
2857	 61.44	0	3070461..3072431	-	656	114798035	-	HNE_2913	-	hypothetical protein
2858	 60.69	0	3072493..3073161	-	222	114800406	-	HNE_2914	-	hypothetical protein
2859	 62.01	0	3073276..3074391	+	371	114800388	-	HNE_2915	-	acyl-CoA dehydrogenase family protein
2860	 60.41	0	3074453..3074995	-	180	114799675	-	HNE_2916	-	hypothetical protein
2861	 60.17	0	3075203..3076402	+	399	114798372	-	HNE_2917	-	acyl-CoA dehydrogenase
2862	 64.25	0	3076442..3077062	-	206	114798421	-	HNE_2918	-	putative lipoprotein
2863	 61.95	0	3077062..3078015	-	317	114799224	-	HNE_2919	-	virulence factor Mce-like protein
2864	 61.85	0	3078030..3078797	-	255	114799973	-	HNE_2920	-	ABC transporter, ATP-binding protein
2865	 61.70	0	3078794..3079921	-	375	114798707	-	HNE_2921	-	hypothetical protein
2866	 67.37	+1	3080011..3081009	+	332	114797771	-	HNE_2922	-	mandelate racemase/muconate lactonizing enzyme family protein
2867	 63.28	0	3081161..3081691	-	176	114799834	-	HNE_2923	-	hypothetical protein
2868	 64.05	0	3081786..3083699	-	637	114798817	-	HNE_2924	-	ABC transporter, ATP-binding protein
2869	 66.50	+1	3083821..3084438	+	205	114797058	-	HNE_2925	-	acetyltransferase
2870	 63.52	0	3084435..3085547	-	370	114799984	-	HNE_2926	-	hypothetical protein
2871	 61.63	0	3085651..3086067	+	138	114800348	-	HNE_2927	-	thioesterase family protein
2872	 68.75	+1	3086093..3086476	+	127	114799845	-	HNE_2928	-	hypothetical protein
2873	 61.30	0	3086458..3087072	-	204	114798618	-	HNE_2929	-	putative lipoprotein
2874	 61.16	0	3087157..3088173	+	338	114798234	pip	HNE_2930	-	prolyl aminopeptidase
2875	 53.56	-2	3088264..3088614	+	116	114799380	-	HNE_2931	-	hypothetical protein
2876	 60.41	0	3089214..3090635	-	473	114799725	-	HNE_2932	-	sodium-dependent symporter family protein
2877	 63.12	0	3090718..3091845	-	375	114797109	rodA	HNE_2933	-	rod shape-determining protein RodA
2878	 65.24	0	3091950..3093905	-	651	114797905	mrdA	HNE_2934	-	penicillin-binding protein 2
2879	 62.86	0	3093902..3094453	-	183	114798654	-	HNE_2935	-	hypothetical protein
2880	 66.96	+1	3094456..3095490	-	344	114799374	-	HNE_2936	-	putative rod shape-determining protein MreC
2881	 60.81	0	3095529..3096569	-	346	114800181	mreB	HNE_2937	-	rod shape-determining protein MreB
2882	 63.64	0	3097054..3099399	-	781	114798822	-	HNE_2938	-	putative DNA helicase II
2883	 61.49	0	3099565..3101265	+	566	114798357	-	HNE_2939	-	AsmA family protein
2884	 65.43	0	3101340..3102068	+	242	114798129	-	HNE_2940	-	hypothetical protein
2885	 60.99	0	3102077..3102622	-	181	114797131	-	HNE_2941	-	putative lipoprotein
2886	 62.51	0	3102708..3103814	-	368	114799651	-	HNE_2942	-	oxidoreductase, FAD/FMN-binding
2887	 63.09	0	3103965..3104942	+	325	114798671	-	HNE_2943	-	hypothetical protein
62.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.