IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2848	 62.38	0	2858674..2859864	+	396	55379790	graD4c	rrnAC3232	-	glucose-1-phosphate thymidylyltransferase
2849	 63.71	0	2859864..2861654	+	596	55379791	glmS2	rrnAC3235	-	glucosamine-fructose-6-phosphate aminotransferase
2850	 52.38	-2	2862103..2862522	-	139	55379792	-	rrnAC3236	-	sugar transferase involved in lipopolysaccharide synthesis
2851	 58.20	-1	2863875..2864630	-	251	55379793	rffH3	rrnAC3238	-	glucose-1-phosphate thymidylyltransferase
2852	 61.47	0	2864719..2866026	+	435	55379794	ugd2	rrnAC3239	-	UDP-glucose 6-dehydrogenase
2853	 61.01	0	2866032..2866526	-	164	55379795	-	rrnAC3240	-	putative membrane-bound metal-dependent hydrolase
2854	 61.30	0	2866519..2866965	-	148	55379796	-	rrnAC3241	-	hypothetical protein
2855	 62.00	0	2867062..2869395	-	777	55379797	-	rrnAC3242	-	hypothetical protein
2856	 62.05	0	2869444..2870439	-	331	55379798	galE7	rrnAC3243	-	UDP-glucose 4-epimerase
2857	 64.84	0	2870432..2871364	-	310	55379799	galE5	rrnAC3245	-	UDP-glucose 4-epimerase
2858	 64.36	0	2871367..2872539	-	390	55379800	sqdB	rrnAC3246	-	UDP-sulfoquinovose synthase
2859	 53.33	-2	2872750..2872899	+	49	55379801	-	rrnAC3247	-	hypothetical protein
2860	 66.80	0	2873129..2874649	-	506	55379802	-	rrnAC3248	-	hypothetical protein
2861	 56.67	-1	2874782..2875231	-	149	55379803	guaB4	rrnAC3249	-	inosine-5'-monophosphate dehydrogenase related protein IV
2862	 63.66	0	2875262..2875726	-	154	55379804	codA	rrnAC3250	-	cytosine deaminase
2863	 65.84	0	2875912..2877000	+	362	55379805	yjlD3	rrnAC3251	-	NADH dehydrogenase
2864	 65.33	0	2877091..2877687	+	198	55379806	-	rrnAC3253	-	hypothetical protein
2865	 66.30	0	2877739..2879922	+	727	55379807	-	rrnAC3254	-	hypothetical protein
2866	 60.78	0	2880041..2880703	+	220	55379808	-	rrnAC3256	-	hypothetical protein
2867	 64.89	0	2880724..2881005	+	93	55379809	-	rrnAC3257	-	hypothetical protein
2868	 65.99	0	2881126..2882598	+	490	55379810	tgt	rrnAC3258	-	7-cyano-7-deazaguanine tRNA-ribosyltransferase
2869	 64.27	0	2882624..2883499	-	291	55379811	galE1	rrnAC3259	-	UDP-glucose 4-epimerase
2870	 61.78	0	2883565..2884710	-	381	55379812	-	rrnAC3260	-	hypothetical protein
2871	 66.72	0	2885102..2886889	+	595	55379813	tgt	rrnAC3261	-	archaeosine tRNA-ribosyltransferase
2872	 64.95	0	2886973..2887380	+	135	55379814	-	rrnAC3262	-	hypothetical protein
2873	 65.65	0	2887419..2888495	+	358	55379815	-	rrnAC3263	-	hypothetical protein
2874	 67.35	+1	2888763..2889491	-	242	55379816	-	rrnAC3264	-	putative molybdenum-binding protein
2875	 63.27	0	2889577..2890341	-	254	55379817	pstB3	rrnAC3265	-	phosphate ABC transporter ATP-binding protein
2876	 59.53	0	2890341..2891027	-	228	55379818	modB	rrnAC3266	-	molybdenum ABC transporter permease protein
2877	 61.89	0	2891060..2892022	-	320	55379819	-	rrnAC3267	-	molybdate transport protein
2878	 65.26	0	2892464..2892961	-	165	55379820	purQ	rrnAC3268	-	phosphoribosylformylglycinamidine synthase I
2879	 66.67	0	2893194..2893448	-	84	55379821	-	rrnAC3269	-	hypothetical protein
2880	 63.64	0	2893500..2894159	-	219	55379822	-	rrnAC3270	-	hypothetical protein
2881	 65.07	0	2894159..2895034	-	291	55379823	-	rrnAC3271	-	small putative GAF containing sensor
2882	 64.99	0	2895302..2896135	+	277	55379824	purU	rrnAC3272	-	formyltetrahydrofolate deformylase
2883	 65.42	0	2896424..2896984	-	186	55379825	pap2b	rrnAC3274	-	glucose-6-phosphatase
2884	 64.93	0	2897067..2898101	-	344	55379826	hemH	rrnAC3275	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2885	 62.24	0	2898253..2899269	+	338	55379827	nce3	rrnAC3276	-	Na+/Ca2+-exchanging protein
2886	 63.41	0	2899384..2900736	+	450	55379828	-	rrnAC3278	-	FO synthase subunit 2
2887	 66.86	+1	2900936..2901967	-	343	55379829	cofG	rrnAC3279	-	FO synthase subunit 1
2888	 60.76	0	2902231..2902941	-	236	55379830	sop1	rrnAC3280	-	sensory rhodopsin I
2889	 58.49	-1	2902941..2904236	-	431	55379831	htr	rrnAC3281	-	MCP domain-containing signal transducer
2890	 64.43	0	2904611..2905237	-	208	55379832	-	rrnAC3282	-	hypothetical protein
2891	 60.49	0	2905237..2906013	-	258	55379833	-	rrnAC3283	-	hypothetical protein
2892	 61.51	0	2905991..2907172	-	393	55379834	ftsZ5	rrnAC3284	-	cell division protein
2893	 60.00	0	2907310..2908209	-	299	55379835	nolA	rrnAC3285	-	NADH dehydrogenase/oxidoreductase-like protein
2894	 64.12	0	2908350..2908937	+	195	55379836	tdk	rrnAC3286	-	thymidylate kinase
2895	 57.32	-1	2908934..2909254	-	106	55379837	-	rrnAC3287	-	hypothetical protein
2896	 57.14	-1	2909307..2909537	-	76	55379838	-	rrnAC3288	-	hypothetical protein
2897	 62.15	0	2909678..2910364	+	228	55379839	trkA3	rrnAC3289	-	TRK potassium uptake system protein
2898	 55.84	-1	2910367..2910597	+	76	55379840	trh5	rrnAC3290	-	transcription regulator
2899	 63.94	0	2910637..2911149	-	170	55379841	-	rrnAC3291	-	hypothetical protein
2900	 62.86	0	2911600..2912124	-	174	55379842	-	rrnAC3292	-	hypothetical protein
2901	 61.03	0	2912162..2912569	-	135	55379843	-	rrnAC3294	-	hypothetical protein
2902	 62.41	0	2912562..2913971	-	469	55379844	ykfD	rrnAC3295	-	oligopeptide ABC transporter ATP-binding
2903	 62.49	0	2913892..2915112	-	406	55379845	oppD2	rrnAC3296	-	oligopeptide ABC transporter ATPase component
2904	 60.57	0	2915109..2916569	-	486	55379846	oppC	rrnAC3297	-	oligopeptide ABC transporter permease protein
2905	 57.64	-1	2916566..2917606	-	346	55379847	dppB	rrnAC3298	-	dipeptide ABC transporter permease
2906	 60.24	0	2917719..2919584	-	621	55379848	dppA	rrnAC3299	-	dipeptide ABC transporter dipeptide-binding
2907	 62.28	0	2919834..2920175	-	113	55379849	-	rrnAC3300	-	hypothetical protein
2908	 66.53	0	2920232..2920966	-	244	55379850	-	rrnAC3302	-	hypothetical protein
2909	 63.33	0	2921057..2921686	-	209	55379851	ppiB1	rrnAC3303	-	peptidyl-prolyl cis-trans isomerase
2910	 66.14	0	2921772..2922713	-	313	55379852	yfhM	rrnAC3304	-	epoxide hydrolase-related protein
2911	 64.83	0	2922762..2923847	-	361	55379853	trpD1	rrnAC3306	-	anthranilate phosphoribosyltransferase
2912	 60.79	0	2923957..2924994	+	345	55379854	nirD	rrnAC3307	-	heme biosynthesis protein
2913	 57.17	-1	2925068..2925667	+	199	55379855	hlx5	rrnAC3308	-	HoxA-like transcriptional regulator
2914	 62.47	0	2925755..2926684	+	309	55379856	-	rrnAC3309	-	GTP cyclohydrolase
2915	 60.64	0	2926822..2927634	-	270	55379857	-	rrnAC3310	-	transcription regulator
2916	 69.14	+1	2927705..2929318	-	537	55379858	-	rrnAC3311	-	hypothetical protein
2917	 65.87	0	2929400..2930776	+	458	55379859	cyp1	rrnAC3312	-	cytochrome P450
2918	 67.20	+1	2930850..2931407	+	185	55379860	fxsA	rrnAC3314	-	FxsA
2919	 58.97	0	2931813..2932670	+	285	55379861	-	rrnAC3315	-	hypothetical protein
2920	 61.07	0	2932816..2933244	-	142	55379862	arsC	rrnAC3316	-	putative arsenate reductase
2921	 59.62	0	2933691..2934542	+	283	55379863	-	rrnAC3317	-	hypothetical protein
2922	 65.04	0	2934588..2935877	-	429	55379864	-	rrnAC3318	-	hypothetical protein
2923	 59.60	0	2935978..2936373	+	131	55379865	-	rrnAC3319	-	hypothetical protein
2924	 61.81	0	2936421..2937017	+	198	55379866	rnhA	rrnAC3320	-	ribonuclease H-like protein
2925	 60.36	0	2937010..2937564	+	184	55379867	-	rrnAC3321	-	hypothetical protein
2926	 54.44	-2	2937649..2938008	-	119	55379868	-	rrnAC3322	-	transcription regulator
2927	 57.68	-1	2938306..2938839	+	177	55379869	ipp	rrnAC3323	-	inorganic pyrophosphatase
2928	 61.90	0	2938971..2939096	+	41	55379870	-	rrnAC3324	-	hypothetical protein
2929	 61.90	0	2939184..2940527	+	447	55379871	-	rrnAC3325	-	sulfatase arylsulfatase A-like
2930	 64.99	0	2940567..2941640	-	357	55379872	ftsZ4	rrnAC3326	-	cell division protein
2931	 61.96	0	2941768..2942043	-	91	55379873	-	rrnAC3327	-	hypothetical protein
2932	 58.45	-1	2942095..2942715	+	206	55379874	-	rrnAC3328	-	hypothetical protein
2933	 67.27	+1	2942731..2943390	-	219	55379875	hcp3	rrnAC3329	-	halocyanin precursor-like
2934	 65.47	0	2943519..2944268	+	249	55379876	-	rrnAC3330	-	hypothetical protein
2935	 57.53	-1	2945079..2945264	-	61	55379877	-	rrnAC3331	-	hypothetical protein
2936	 67.73	+1	2945414..2946163	-	249	55379878	-	rrnAC3332	-	hypothetical protein
2937	 60.16	0	2946164..2946547	+	127	55379879	-	rrnAC3333	-	hypothetical protein
2938	 66.32	0	2946548..2947702	-	384	55379880	dnaJ2	rrnAC3334	-	chaperone protein DnaJ
2939	 67.82	+1	2947814..2948332	+	172	55379881	-	rrnAC3335	-	hypothetical protein
2940	 59.87	0	2948419..2948727	-	102	55379882	-	rrnAC3336	-	hypothetical protein
2941	 60.12	0	2949358..2950167	+	269	55379883	-	rrnAC3337	-	putative transcriptional regulator
2942	 59.12	0	2950204..2950521	-	105	55379884	-	rrnAC3338	-	hypothetical protein
2943	 63.47	0	2950969..2952876	-	635	55379885	dnaK	rrnAC3339	-	chaperone protein DnaK
2944	 64.32	0	2953042..2953722	-	226	55379886	grpE	rrnAC3340	-	heat shock protein GrpE protein
2945	 55.88	-1	2954115..2954735	-	206	55379887	-	rrnAC3341	-	hypothetical protein
2946	 65.50	0	2954829..2955773	-	314	55379888	truB	rrnAC3342	-	H/ACA RNA-protein complex component Cbf5p
2947	 63.39	0	2955724..2956302	-	192	55379889	cmk	rrnAC3343	-	cytidylate kinase
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.