IslandPathversion 1.0

IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.75 STD DEV: 4.09
Haloarcula marismortui ATCC 43049 chromosome I, complete sequence - 1..3131724
3131 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1742	 62.33	0	1749101..1750045	-	314	55378684	graD4b	rrnAC1960	-	glucose-1-phosphate thymidylyltransferase
1743	 66.14	0	1750096..1754637	-	1513	55378685	cga-1	rrnAC1961	-	glucoamylase
1744	 67.62	+1	1754759..1756750	-	663	55378686	malA	rrnAC1962	-	putative alpha-D-14-glucosidase
1745	 64.66	0	1756935..1757183	+	82	55378687	-	rrnAC1963	-	hypothetical protein
1746	 62.09	0	1757669..1758433	-	254	55378688	arcR6	rrnAC1964	-	transcription regulator
1747	 64.98	0	1758847..1760154	+	435	55378689	aceB	rrnAC1965	-	malate synthase
1748	 64.30	0	1760198..1760578	-	126	55378690	gloA3	rrnAC1966	-	lactoylglutathione lyase
1749	 64.36	0	1760681..1763719	+	1012	55378691	glcD1	rrnAC1967	-	glycolate oxidase subunit GlcD
1750	 66.36	0	1764280..1765578	-	432	55378692	-	rrnAC1968	-	hypothetical protein
1751	 65.87	0	1765702..1766832	-	376	55378693	-	rrnAC1970	-	hypothetical protein
1752	 61.73	0	1766944..1767753	+	269	55378694	arcR5	rrnAC1971	-	transcription regulator
1753	 64.86	0	1767812..1768975	-	387	55378695	gcdH	rrnAC1972	-	glutaryl-CoA dehydrogenase
1754	 64.01	0	1769058..1770527	+	489	55378696	aldY4	rrnAC1973	-	aldehyde dehydrogenase
1755	 62.87	0	1770622..1771437	+	271	55378697	aacC	rrnAC1974	-	aminoglycoside N3'-acetyltransferase
1756	 66.85	+1	1771471..1772532	-	353	55378698	adh5	rrnAC1975	-	alcohol dehydrogenase
1757	 63.10	0	1772680..1774335	-	551	55378699	alkK4	rrnAC1977	-	medium-chain fatty acid-CoA ligase
1758	 60.71	0	1774368..1774703	-	111	55378700	-	rrnAC1978	-	hypothetical protein
1759	 67.17	+1	1774711..1775301	+	196	55378701	ech5	rrnAC1979	-	enoyl-CoA hydratase/isomerase
1760	 66.01	0	1775345..1776415	+	356	55378702	aph	rrnAC1980	-	aminoglycoside phosphotransferase
1761	 66.62	0	1776584..1778548	+	654	55378703	hbd2	rrnAC1982	-	3-hydroxybutyryl-CoA dehydrogenase
1762	 65.41	0	1778575..1780329	-	584	55378704	acdI	rrnAC1983	-	acyl-CoA dehydrogenase
1763	 65.68	0	1780696..1781505	-	269	55378705	fabG4	rrnAC1984	-	3-oxoacyl-[acyl-carrier protein] reductase
1764	 64.19	0	1781783..1782226	+	147	55378706	maoC1	rrnAC1985	-	monoamine oxidase regulatory protein
1765	 62.98	0	1782275..1783414	-	379	55378707	acdC	rrnAC1986	-	acyl-CoA dehydrogenase
1766	 65.43	0	1783516..1784886	+	456	55378708	anf	rrnAC1987	-	ABC transporter substrate-binding protein
1767	 65.09	0	1784890..1785777	+	295	55378709	livH-5	rrnAC1989	-	branched-chain amino acid ABC transporter permease protein
1768	 66.49	0	1785770..1786891	+	373	55378710	livM-4	rrnAC1991	-	branched-chain amino acid ABC transporter permease protein
1769	 64.13	0	1787035..1787625	+	196	55378711	livG-5	rrnAC1992	-	branched-chain amino acid ABC transporter ATP-binding protein
1770	 64.99	0	1787622..1788338	+	238	55378712	livF-5	rrnAC1993	-	branched-chain amino acid ABC transporter ATP-binding protein
1771	 57.44	-1	1789220..1789555	+	111	55378713	-	rrnAC1994	-	hypothetical protein
1772	 61.29	0	1789971..1790249	-	92	55378714	-	rrnAC1995	-	hypothetical protein
1773	 62.37	0	1790366..1791016	+	216	55378715	-	rrnAC1996	-	DNA binding domain-containing protein
1774	 60.74	0	1791488..1792246	-	252	55378716	rbnBN2	rrnAC1997	-	ribonuclease BN
1775	 64.69	0	1792635..1793090	-	151	55378717	-	rrnAC1998	-	hypothetical protein
1776	 66.75	0	1794126..1795334	+	402	55378718	spaT	rrnAC1999	-	aminotransferase class V
1777	 61.90	0	1795567..1796385	+	272	55378719	usp9	rrnAC2000	-	universal stress protein
1778	 61.56	0	1796993..1797619	+	208	55378720	-	rrnAC2001	-	hypothetical protein
1779	 58.19	-1	1797858..1798034	+	58	55378721	-	rrnAC2002	-	hypothetical protein
1780	 62.87	0	1798037..1799275	+	412	55378722	ftsZ3	rrnAC2004	-	cell division protein FtsZ
1781	 62.95	0	1799380..1800375	-	331	55378723	-	rrnAC2005	-	hypothetical protein
1782	 65.67	0	1800464..1801162	-	232	55378724	-	rrnAC2006	-	hypothetical protein
1783	 67.74	+1	1801251..1802276	-	341	55378725	-	rrnAC2007	-	hypothetical protein
1784	 66.05	0	1802359..1803009	+	216	55378726	-	rrnAC2009	-	hypothetical protein
1785	 67.18	+1	1803374..1804156	+	260	55378727	-	rrnAC2010	-	hypothetical protein
1786	 67.59	+1	1804195..1804626	+	143	55378728	-	rrnAC2011	-	hypothetical protein
1787	 68.03	+1	1804619..1805203	+	194	55378729	-	rrnAC2012	-	hypothetical protein
1788	 68.81	+1	1805181..1805927	-	248	55378730	-	rrnAC2014	-	methyltransferase
1789	 64.15	0	1806021..1806854	-	277	55378731	xthA	rrnAC2015	-	endonuclease IV
1790	 62.27	0	1806895..1807281	-	128	55378732	-	rrnAC2016	-	hypothetical protein
1791	 61.07	0	1807424..1808173	+	249	55378733	-	rrnAC2017	-	transcription regulator
1792	 63.06	0	1808213..1810405	-	730	55378734	katG1	rrnAC2018	-	peroxidase/catalase
1793	 67.04	+1	1810742..1811536	-	264	55378735	lpl	rrnAC2019	-	lipoate protein ligase
1794	 62.05	0	1811984..1812460	-	158	55378736	-	rrnAC2021	-	hypothetical protein
1795	 66.67	0	1812605..1813282	-	225	55378737	-	rrnAC2022	-	transcription regulator
1796	 64.10	0	1813371..1815008	+	545	55378738	nuoC	rrnAC2023	-	NADH dehydrogenase I chain C D
1797	 60.11	0	1815070..1815603	+	177	55378739	msrA1	rrnAC2024	-	methionine sulfoxide reductase A
1798	 60.29	0	1815796..1815999	-	67	55378740	-	rrnAC2025	-	hypothetical protein
1799	 58.59	-1	1816075..1816272	+	65	55378741	-	rrnAC2026	-	hypothetical protein
1800	 64.51	0	1816272..1818359	+	695	55378742	cdc48a	rrnAC2027	-	cell division cycle protein 48
1801	 57.46	-1	1818356..1818583	-	75	55378743	-	rrnAC2028	-	hypothetical protein
1802	 60.82	0	1818649..1819401	-	250	55378744	xop1	rrnAC2030	-	bacteriorhodopsin precursor
1803	 55.84	-1	1819740..1820090	+	116	55378745	-	rrnAC2031	-	hypothetical protein
1804	 60.14	0	1820156..1820599	+	147	55378746	-	rrnAC2032	-	thioesterase of unknown specificity
1805	 60.42	0	1820703..1821887	+	394	55378747	htlA	rrnAC2034	-	HTR-like protein
1806	 59.77	0	1821891..1823123	-	410	55378748	-	rrnAC2035	-	hypothetical protein
1807	 57.65	-1	1823972..1824880	+	302	55378749	pkn	rrnAC2036	-	serine/threonine protein kinase
1808	 61.90	0	1825575..1825994	+	139	55378750	troR	rrnAC2037	-	iron-dependent repressor
1809	 61.47	0	1826164..1826490	+	108	55378751	nifU2	rrnAC2038	-	NifU-like domain-containing protein
1810	 64.36	0	1826792..1828741	+	649	55378752	oppA	rrnAC2039	-	oligopeptide ABC transporter solute-binding protein
1811	 63.10	0	1828751..1829704	+	317	55378753	oppB	rrnAC2040	-	oligopeptide ABC transporter permease protein
1812	 64.45	0	1829708..1830745	+	345	55378754	oppC2	rrnAC2041	-	oligopeptide transport system permease protein OppC
1813	 63.54	0	1830745..1831926	+	393	55378755	oppD1	rrnAC2042	-	oligopeptide ABC transporter ATPase component
1814	 63.57	0	1831919..1833241	+	440	55378756	oppF	rrnAC2043	-	oligopeptide ABC transporter ATP-binding protein
1815	 61.56	0	1833281..1835629	-	782	55378757	htlD	rrnAC2044	-	HTR-like protein
1816	 64.43	0	1835747..1836373	+	208	55378758	-	rrnAC2045	-	hypothetical protein
1817	 61.88	0	1836403..1837446	-	347	55378759	-	rrnAC2046	-	hypothetical protein
1818	 63.12	0	1837439..1838398	-	319	55378760	sppA	rrnAC2047	-	protease IV-like
1819	 64.75	0	1838526..1839410	+	294	55378761	mocA	rrnAC2048	-	oxidoreductase
1820	 67.18	+1	1839437..1840222	+	261	55378762	-	rrnAC2049	-	hypothetical protein
1821	 66.36	0	1840333..1840659	+	108	55378763	-	rrnAC2050	-	hypothetical protein
1822	 66.86	+1	1840688..1841707	-	339	55378764	tfbF	rrnAC2051	-	transcription initiation factor IIB
1823	 65.15	0	1841946..1842737	-	263	55378765	-	rrnAC2052	-	transcription regulator
1824	 64.43	0	1842827..1843228	+	133	55378766	-	rrnAC2053	-	hypothetical protein
1825	 64.10	0	1843244..1844023	-	259	55378767	-	rrnAC2054	-	hypothetical protein
1826	 66.67	0	1844113..1845075	-	320	55378768	serA3	rrnAC2056	-	D-3-phosphoglycerate dehydrogenase
1827	 56.41	-1	1845240..1845512	+	90	55378769	moaD	rrnAC2057	-	molybdopterin converting factor subunit 1
1828	 60.95	0	1845538..1845939	-	133	55378770	-	rrnAC2058	-	hypothetical protein
1829	 64.77	0	1846031..1846399	+	122	55378771	-	rrnAC2059	-	hypothetical protein
1830	 61.57	0	1846504..1846758	+	84	55378772	-	rrnAC2060	-	hypothetical protein
1831	 64.50	0	1846769..1847137	+	122	55378773	-	rrnAC2061	-	hypothetical protein
1832	 58.74	0	1847121..1847486	-	121	55378774	-	rrnAC2062	-	hypothetical protein
1833	 62.30	0	1847523..1849469	-	648	55378775	aor1	rrnAC2064	-	aldehyde ferredoxin oxidoreductase
1834	 67.17	+1	1849730..1850320	+	196	55378776	rpl15E	rrnAC2065	-	50S ribosomal protein L15e
1835	 70.83	+1	1850598..1851629	-	343	55378777	blh	rrnAC2066	-	Brp-like protein-like
1836	 63.09	0	1851620..1852345	-	241	55378778	crtY	rrnAC2067	-	lycopene cyclase
1837	 64.40	0	1852394..1853365	-	323	55378779	crtB	rrnAC2069	-	phytoene synthase
1838	 63.31	0	1853622..1855202	-	526	55378780	boa	rrnAC2070	-	putative light- and oxygen-sensing transcription regulator
1839	 63.16	0	1855332..1855616	+	94	55378781	-	rrnAC2071	-	hypothetical protein
1840	 63.10	0	1855683..1857056	+	457	55378782	vacB	rrnAC2072	-	ribonuclease R
1841	 65.86	0	1857457..1858197	+	246	55378783	trp2	rrnAC2073	-	ABC transporter ATP-binding protein
62.75	MEAN

4.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.