IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3334	 56.25	0	3685436..3685579	+	47	39998444	-	GSU3355	-	hypothetical protein
3335	 62.86	0	3685627..3687228	+	533	39998445	-	GSU3356	-	GGDEF domain/HAMP domain-containing protein
3336	 62.56	0	3687303..3689687	+	794	39998446	-	GSU3357	-	sensory box histidine kinase
3337	 61.42	0	3689689..3690126	-	145	39998447	-	GSU3358	-	hypothetical protein
3338	 65.07	0	3690311..3691372	+	353	39998448	-	GSU3359	-	hypothetical protein
3339	 64.92	0	3691369..3692688	+	439	39998449	-	GSU3360	-	M16 family peptidase
3340	 64.34	0	3692660..3694207	-	515	39998450	-	GSU3361	-	transglutaminase domain-containing protein
3341	 61.99	0	3694218..3694559	-	113	39998451	-	GSU3362	-	hypothetical protein
3342	 58.73	0	3694820..3697111	+	763	39998452	-	GSU3363	-	sigma-54 dependent trancsriptional regulator
3343	 48.37	-2	3697200..3697505	+	101	39998453	-	GSU3364	-	hypothetical protein
3344	 60.03	0	3697619..3699064	-	481	39998454	cysS	GSU3365	-	cysteinyl-tRNA synthetase
3345	 62.46	0	3699097..3700761	-	554	39998455	glnS	GSU3366	-	glutaminyl-tRNA synthetase
3346	 63.71	0	3700792..3701265	-	157	39998456	ispF	GSU3367	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3347	 64.23	0	3701309..3702007	-	232	39998457	ispD	GSU3368	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
3348	 66.16	+1	3702160..3703548	-	462	39998458	selA	GSU3369	-	selenocysteine synthase
3349	 57.49	0	3703818..3704525	-	235	39998459	-	GSU3370	-	GntR family transcriptional regulator
3350	 62.39	0	3704800..3705570	+	256	39998460	-	GSU3371	-	AP endonuclease
3351	 61.33	0	3705606..3707048	-	480	39998461	-	GSU3372	-	cardiolipin synthetase, putative
3352	 64.88	0	3707306..3708652	+	448	39998462	sun	GSU3373	-	Sun protein
3353	 61.26	0	3708688..3709353	+	221	39998463	rpe	GSU3374	-	ribulose-phosphate 3-epimerase
3354	 62.21	0	3709465..3709980	+	171	39998464	-	GSU3375	-	mutT/nudix family protein
3355	 61.49	0	3710034..3710960	+	308	39998465	-	GSU3376	-	GGDEF/response regulator receiver domain-containing protein
3356	 62.30	0	3710946..3711632	-	228	39998466	-	GSU3377	-	helix-hairpin-helix domain-containing protein
3357	 62.77	0	3711595..3714648	-	1017	39998467	-	GSU3378	-	glutamate-ammonia ligase adenylyltransferase
3358	 63.88	0	3714645..3715685	-	346	39998468	-	GSU3379	-	aIF-2BI family translation initiation factor
3359	 63.12	0	3715702..3717141	-	479	39998469	gatB	GSU3380	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
3360	 66.26	+1	3717158..3718615	-	485	39998470	gatA	GSU3381	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
3361	 61.45	0	3718661..3719005	-	114	39998471	-	GSU3382	-	hypothetical protein
3362	 57.29	0	3718983..3719270	-	95	39998472	gatC	GSU3383	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
3363	 63.69	0	3719386..3720963	-	525	39998473	-	GSU3384	-	cardiolipin synthetase, putative
3364	 61.39	0	3721688..3723544	+	618	39998474	pckA	GSU3385	-	phosphoenolpyruvate carboxykinase
3365	 59.38	0	3723671..3724768	-	365	39998475	-	GSU3386	-	putative lipoprotein
3366	 63.55	0	3725285..3726118	-	277	39998476	-	GSU3387	-	AraC/XylS family transcriptional regulator
3367	 63.56	0	3726258..3727223	+	321	39998477	-	GSU3388	-	hypothetical protein
3368	 62.38	0	3727295..3727924	-	209	39998478	-	GSU3389	-	hypothetical protein
3369	 62.05	0	3727955..3728863	-	302	39998479	-	GSU3390	-	hypothetical protein
3370	 60.00	0	3728872..3729576	-	234	39998480	-	GSU3391	-	branched-chain amino acid ABC transporter, ATP-binding protein
3371	 62.91	0	3729621..3730391	-	256	39998481	-	GSU3392	-	branched-chain amino acid ABC transporter, ATP-binding protein
3372	 60.06	0	3730410..3731333	-	307	39998482	-	GSU3393	-	branched-chain amino acid ABC transporter, permease protein
3373	 61.64	0	3731341..3732216	-	291	39998483	-	GSU3394	-	branched-chain amino acid ABC transporter, permease protein
3374	 62.39	0	3732461..3735475	-	1004	39998484	putA	GSU3395	-	proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
3375	 62.20	0	3735764..3736480	+	238	39998485	-	GSU3396	-	GntR family transcriptional regulator
3376	 62.13	0	3736569..3736943	+	124	39998486	-	GSU3397	-	hypothetical protein
3377	 67.20	+1	3737064..3738368	+	434	39998487	-	GSU3398	-	metal ion efflux outer membrane protein family protein, putative
3378	 67.87	+1	3738371..3740119	+	582	39998488	-	GSU3399	-	RND family efflux transporter MFP subunit
3379	 64.78	0	3740132..3743203	+	1023	39998489	-	GSU3400	-	CzcA family heavy metal efflux protein
3380	 61.13	0	3743342..3744532	-	396	39998490	-	GSU3401	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative
3381	 55.90	0	3744573..3744860	-	95	39998491	-	GSU3402	-	hypothetical protein
3382	 57.12	0	3744939..3746321	-	460	39998492	-	GSU3403	-	hypothetical protein
3383	 60.30	0	3746456..3747178	-	240	39998493	-	GSU3404	-	amino acid ABC transporter, ATP-binding protein
3384	 58.96	0	3747189..3747980	-	263	39998494	-	GSU3405	-	amino acid ABC transporter, permease protein
3385	 58.60	0	3747981..3748736	-	251	39998495	-	GSU3406	-	amino acid ABC transporter, periplasmic amino acid-binding protein
3386	 62.00	0	3748930..3749808	+	292	39998496	-	GSU3407	-	hypothetical protein
3387	 61.36	0	3749852..3750907	+	351	39998497	-	GSU3408	-	L-threonine aldolase, low-specificity
3388	 58.67	0	3751347..3751571	+	74	39998498	-	GSU3409	-	hypothetical protein
3389	 59.74	0	3751637..3751867	+	76	39998499	-	GSU3410	-	hypothetical protein
3390	 65.05	0	3752116..3754335	-	739	39998500	-	GSU3411	-	ATP-dependent DNA helicase PcrA, putative
3391	 62.91	0	3754334..3754546	+	70	39998501	-	GSU3412	-	hypothetical protein
3392	 64.49	0	3754585..3755181	-	198	39998502	-	GSU3413	-	putative lipoprotein
3393	 59.85	0	3755246..3756889	-	547	39998503	-	GSU3414	-	hypothetical protein
3394	 62.86	0	3757472..3758890	+	472	39998504	-	GSU3415	-	radical SAM domain/B12 binding domain-containing protein
3395	 66.02	0	3758896..3759513	+	205	39998505	-	GSU3416	-	hypothetical protein
3396	 66.86	+1	3759521..3761050	+	509	39998506	-	GSU3417	-	dioxygenase, putative
3397	 63.20	0	3761065..3762537	-	490	39998507	-	GSU3418	-	sigma-54 dependent DNA-binding response regulator
3398	 61.89	0	3762534..3764858	-	774	39998508	-	GSU3419	-	sensor histidine kinase
3399	 66.34	+1	3765224..3766147	+	307	39998509	-	GSU3420	-	lipid A biosynthesis lauroyl acyltransferase, putative
3400	 63.50	0	3766220..3766945	-	241	39998510	-	GSU3421	-	Crp/FNR family transcriptional regulator
3401	 68.64	+1	3766924..3767532	-	202	39998511	-	GSU3422	-	hypothetical protein
3402	 69.51	+1	3767539..3769545	-	668	39998512	tkt	GSU3423	-	transketolase
3403	 67.52	+1	3769624..3771030	+	468	39998513	merA-2	GSU3424	-	mercuric reductase
3404	 66.17	+1	3771037..3771840	+	267	39998514	-	GSU3425	-	hypothetical protein
3405	 66.89	+1	3771846..3772745	-	299	39998515	-	GSU3426	-	hypothetical protein
3406	 62.16	0	3773200..3773532	-	110	39998516	-	GSU3427	-	hypothetical protein
3407	 66.84	+1	3773542..3774105	-	187	39998517	-	GSU3428	-	cytochrome c family protein, putative
3408	 68.74	+1	3774129..3775529	-	466	39998518	nuoN-2	GSU3429	-	NADH dehydrogenase I, N subunit
3409	 64.86	0	3775526..3777016	-	496	39998519	nuoM-2	GSU3430	-	NADH dehydrogenase I, M subunit
3410	 66.99	+1	3777016..3778890	-	624	39998520	nuoL-2	GSU3431	-	NADH dehydrogenase I, L subunit
3411	 62.78	0	3778887..3779195	-	102	39998521	nuoI	GSU3432	-	NADH dehydrogenase I, K subunit
3412	 63.82	0	3779192..3779683	-	163	39998522	nuoJ	GSU3433	-	NADH dehydrogenase I, J subunit
3413	 66.10	+1	3779688..3780218	-	176	39998523	nuoI-2	GSU3434	-	NADH dehydrogenase subunit I
3414	 64.32	0	3780275..3780700	-	141	39998524	-	GSU3435	-	ankyrin repeat-containing protein
3415	 63.54	0	3780842..3781831	-	329	39998525	nuoH-2	GSU3436	-	NADH dehydrogenase I, H subunit
3416	 64.86	0	3781828..3783429	-	533	39998526	-	GSU3437	-	sensory box histidine kinase
3417	 58.19	0	3783594..3783935	-	113	39998527	-	GSU3438	-	hypothetical protein
3418	 66.22	+1	3783961..3785994	-	677	39998528	-	GSU3439	-	NADH dehydrogenase subunit G
3419	 62.30	0	3786004..3786576	-	190	39998529	-	GSU3440	-	hypothetical protein
3420	 66.59	+1	3786573..3787844	-	423	39998530	nuoF	GSU3441	-	NADH dehydrogenase I, F subunit
3421	 64.64	0	3787919..3788263	-	114	39998531	-	GSU3442	-	hypothetical protein
3422	 67.89	+1	3788267..3788755	-	162	39998532	nuoE-2	GSU3443	-	NADH dehydrogenase subunit E
3423	 64.86	0	3788761..3791139	-	792	39998533	nuoBCD	GSU3444	-	trifunctional NADH dehydrogenase I subunit B/C/D
3424	 62.70	0	3791126..3791554	-	142	39998534	nuoA-2	GSU3445	-	NADH dehydrogenase I, A subunit
3425	 68.65	+1	3791654..3792106	-	150	39998535	-	GSU3446	-	thioredoxin family protein, selenocysteine-containing
3426	 60.47	0	3792116..3792583	-	155	39998536	-	GSU3447	-	AhpC/TSA family protein
3427	 66.01	0	3792646..3793857	-	403	39998537	ackA-2	GSU3448	-	acetate kinase
3428	 57.14	0	3793890..3794078	-	62	39998538	-	GSU3449	-	ferredoxin family protein, putative
3429	 66.12	+1	3794113..3798645	-	1510	39998539	-	GSU3450	-	glutamate synthase-related protein
3430	 64.61	0	3799051..3799878	-	275	39998540	-	GSU3451	-	hypothetical protein
3431	 69.70	+1	3799899..3800030	-	43	39998541	-	GSU3452	-	hypothetical protein
3432	 61.58	0	3800181..3801203	-	340	39998542	hemE	GSU3453	-	uroporphyrinogen decarboxylase
3433	 57.80	0	3801376..3802446	-	356	39998543	-	GSU3454	-	radical SAM domain-containing protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.