IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3289	 55.30	-1	3634910..3635173	-	87	39998399	-	GSU3310	-	hypothetical protein
3290	 58.47	0	3635189..3636091	+	300	39998400	-	GSU3311	-	hypothetical protein
3291	 61.74	0	3636130..3637083	-	317	39998401	hemH	GSU3312	-	ferrochelatase
3292	 65.30	0	3637191..3638798	-	535	39998402	-	GSU3313	-	thiolase, putative
3293	 61.95	0	3638936..3639952	-	338	39998403	-	GSU3314	-	putative lipoprotein
3294	 64.58	0	3640042..3641286	-	414	39998404	-	GSU3315	-	major facilitator family transporter
3295	 63.47	0	3641415..3642134	+	239	39998405	-	GSU3316	-	CcmF/CcyK/CcsA family cytochrome c biogenesis protein
3296	 65.41	0	3642950..3644059	+	369	39998406	-	GSU3317	-	hypothetical protein
3297	 64.25	0	3644195..3645598	-	467	39998407	-	GSU3318	-	hypothetical protein
3298	 62.31	0	3645704..3646300	-	198	39998408	ppiA	GSU3319	-	peptidyl-prolyl cis-trans isomerase A
3299	 65.16	0	3646373..3646969	-	198	39998409	-	GSU3320	-	ribosomal protein L11 methyltransferase, putative
3300	 66.81	+1	3647128..3648537	+	469	39998410	-	GSU3321	-	phosphoglucomutase/phosphomannomutase family protein
3301	 57.23	0	3648635..3649588	+	317	39998411	corA-2	GSU3322	-	magnesium and cobalt transport protein CorA
3302	 64.33	0	3649590..3651773	+	727	39998412	ppk	GSU3323	-	polyphosphate kinase
3303	 64.16	0	3651999..3652637	-	212	39998413	-	GSU3324	-	Cro/CI family transcriptional regulator
3304	 63.04	0	3652846..3655659	+	937	39998414	uvrA	GSU3325	-	excinuclease ABC, A subunit
3305	 64.89	0	3655690..3656421	-	243	39998415	-	GSU3326	-	hypothetical protein
3306	 61.22	0	3656418..3656711	-	97	39998416	-	GSU3327	-	hypothetical protein
3307	 63.58	0	3656802..3657545	-	247	39998417	-	GSU3328	-	hypothetical protein
3308	 65.28	0	3657542..3658837	-	431	39998418	-	GSU3329	-	radical SAM domain-containing protein
3309	 65.78	0	3658912..3660036	-	374	39998419	-	GSU3330	-	Oye family NADH-dependent flavin oxidoreductase
3310	 64.38	0	3660079..3661521	-	480	39998420	pyk	GSU3331	-	pyruvate kinase
3311	 61.49	0	3661539..3661886	-	115	39998421	-	GSU3332	-	cytochrome c family protein, putative
3312	 64.29	0	3662036..3663046	-	336	161579496	-	GSU3333	-	3-deoxy-7-phosphoheptulonate synthase
3313	 60.95	0	3663224..3663538	+	104	39998423	-	GSU3334	-	cytochrome c family protein, putative
3314	 64.21	0	3663545..3663829	+	94	39998424	-	GSU3335	-	hypothetical protein
3315	 59.34	0	3663853..3664125	+	90	39998425	-	GSU3336	-	hypothetical protein
3316	 65.60	0	3664119..3664682	+	187	39998426	-	GSU3337	-	hypothetical protein
3317	 61.40	0	3664470..3664583	-	37	39998427	-	GSU3338	-	hypothetical protein
3318	 57.99	0	3664919..3665206	+	95	39998428	groES	GSU3339	-	co-chaperonin GroES
3319	 62.94	0	3665270..3666904	+	544	39998429	groEL	GSU3340	-	chaperonin GroEL
3320	 60.31	0	3667264..3669228	+	654	39998430	-	GSU3341	-	hypothetical protein
3321	 63.24	0	3669269..3670612	+	447	39998431	-	GSU3342	-	hypothetical protein
3322	 60.38	0	3670697..3672319	+	540	39998432	-	GSU3343	-	SpoVR-like family protein
3323	 59.03	0	3672332..3674635	+	767	39998433	-	GSU3344	-	hypothetical protein
3324	 63.69	0	3674668..3675036	+	122	39998434	-	GSU3345	-	hypothetical protein
3325	 60.39	0	3675042..3676874	-	610	39998435	-	GSU3346	-	potassium uptake protein, Kup system
3326	 65.57	0	3677009..3679381	+	790	39998436	-	GSU3347	-	U32 family peptidase
3327	 64.02	0	3679517..3680422	+	301	39998437	-	GSU3348	-	heat shock protein 33
3328	 66.23	+1	3680526..3681209	+	227	39998438	-	GSU3349	-	cyclase, putative
3329	 65.19	0	3681280..3682977	+	565	39998439	-	GSU3350	-	sensor histidine kinase/GGDEF domain-containing protein
3330	 61.45	0	3683067..3683564	+	165	39998440	-	GSU3351	-	hypothetical protein
3331	 64.60	0	3683584..3683970	+	128	39998441	-	GSU3352	-	hypothetical protein
3332	 67.12	+1	3684041..3684931	-	296	39998442	-	GSU3353	-	RNA pseudouridine synthase family protein
3333	 65.33	0	3684928..3685449	-	173	39998443	-	GSU3354	-	mutT/nudix family protein
3334	 56.25	0	3685436..3685579	+	47	39998444	-	GSU3355	-	hypothetical protein
3335	 62.86	0	3685627..3687228	+	533	39998445	-	GSU3356	-	GGDEF domain/HAMP domain-containing protein
3336	 62.56	0	3687303..3689687	+	794	39998446	-	GSU3357	-	sensory box histidine kinase
3337	 61.42	0	3689689..3690126	-	145	39998447	-	GSU3358	-	hypothetical protein
3338	 65.07	0	3690311..3691372	+	353	39998448	-	GSU3359	-	hypothetical protein
3339	 64.92	0	3691369..3692688	+	439	39998449	-	GSU3360	-	M16 family peptidase
3340	 64.34	0	3692660..3694207	-	515	39998450	-	GSU3361	-	transglutaminase domain-containing protein
3341	 61.99	0	3694218..3694559	-	113	39998451	-	GSU3362	-	hypothetical protein
3342	 58.73	0	3694820..3697111	+	763	39998452	-	GSU3363	-	sigma-54 dependent trancsriptional regulator
3343	 48.37	-2	3697200..3697505	+	101	39998453	-	GSU3364	-	hypothetical protein
3344	 60.03	0	3697619..3699064	-	481	39998454	cysS	GSU3365	-	cysteinyl-tRNA synthetase
3345	 62.46	0	3699097..3700761	-	554	39998455	glnS	GSU3366	-	glutaminyl-tRNA synthetase
3346	 63.71	0	3700792..3701265	-	157	39998456	ispF	GSU3367	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3347	 64.23	0	3701309..3702007	-	232	39998457	ispD	GSU3368	-	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
3348	 66.16	+1	3702160..3703548	-	462	39998458	selA	GSU3369	-	selenocysteine synthase
3349	 57.49	0	3703818..3704525	-	235	39998459	-	GSU3370	-	GntR family transcriptional regulator
3350	 62.39	0	3704800..3705570	+	256	39998460	-	GSU3371	-	AP endonuclease
3351	 61.33	0	3705606..3707048	-	480	39998461	-	GSU3372	-	cardiolipin synthetase, putative
3352	 64.88	0	3707306..3708652	+	448	39998462	sun	GSU3373	-	Sun protein
3353	 61.26	0	3708688..3709353	+	221	39998463	rpe	GSU3374	-	ribulose-phosphate 3-epimerase
3354	 62.21	0	3709465..3709980	+	171	39998464	-	GSU3375	-	mutT/nudix family protein
3355	 61.49	0	3710034..3710960	+	308	39998465	-	GSU3376	-	GGDEF/response regulator receiver domain-containing protein
3356	 62.30	0	3710946..3711632	-	228	39998466	-	GSU3377	-	helix-hairpin-helix domain-containing protein
3357	 62.77	0	3711595..3714648	-	1017	39998467	-	GSU3378	-	glutamate-ammonia ligase adenylyltransferase
3358	 63.88	0	3714645..3715685	-	346	39998468	-	GSU3379	-	aIF-2BI family translation initiation factor
3359	 63.12	0	3715702..3717141	-	479	39998469	gatB	GSU3380	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
3360	 66.26	+1	3717158..3718615	-	485	39998470	gatA	GSU3381	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
3361	 61.45	0	3718661..3719005	-	114	39998471	-	GSU3382	-	hypothetical protein
3362	 57.29	0	3718983..3719270	-	95	39998472	gatC	GSU3383	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
3363	 63.69	0	3719386..3720963	-	525	39998473	-	GSU3384	-	cardiolipin synthetase, putative
3364	 61.39	0	3721688..3723544	+	618	39998474	pckA	GSU3385	-	phosphoenolpyruvate carboxykinase
3365	 59.38	0	3723671..3724768	-	365	39998475	-	GSU3386	-	putative lipoprotein
3366	 63.55	0	3725285..3726118	-	277	39998476	-	GSU3387	-	AraC/XylS family transcriptional regulator
3367	 63.56	0	3726258..3727223	+	321	39998477	-	GSU3388	-	hypothetical protein
3368	 62.38	0	3727295..3727924	-	209	39998478	-	GSU3389	-	hypothetical protein
3369	 62.05	0	3727955..3728863	-	302	39998479	-	GSU3390	-	hypothetical protein
3370	 60.00	0	3728872..3729576	-	234	39998480	-	GSU3391	-	branched-chain amino acid ABC transporter, ATP-binding protein
3371	 62.91	0	3729621..3730391	-	256	39998481	-	GSU3392	-	branched-chain amino acid ABC transporter, ATP-binding protein
3372	 60.06	0	3730410..3731333	-	307	39998482	-	GSU3393	-	branched-chain amino acid ABC transporter, permease protein
3373	 61.64	0	3731341..3732216	-	291	39998483	-	GSU3394	-	branched-chain amino acid ABC transporter, permease protein
3374	 62.39	0	3732461..3735475	-	1004	39998484	putA	GSU3395	-	proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase
3375	 62.20	0	3735764..3736480	+	238	39998485	-	GSU3396	-	GntR family transcriptional regulator
3376	 62.13	0	3736569..3736943	+	124	39998486	-	GSU3397	-	hypothetical protein
3377	 67.20	+1	3737064..3738368	+	434	39998487	-	GSU3398	-	metal ion efflux outer membrane protein family protein, putative
3378	 67.87	+1	3738371..3740119	+	582	39998488	-	GSU3399	-	RND family efflux transporter MFP subunit
3379	 64.78	0	3740132..3743203	+	1023	39998489	-	GSU3400	-	CzcA family heavy metal efflux protein
3380	 61.13	0	3743342..3744532	-	396	39998490	-	GSU3401	-	branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative
3381	 55.90	0	3744573..3744860	-	95	39998491	-	GSU3402	-	hypothetical protein
3382	 57.12	0	3744939..3746321	-	460	39998492	-	GSU3403	-	hypothetical protein
3383	 60.30	0	3746456..3747178	-	240	39998493	-	GSU3404	-	amino acid ABC transporter, ATP-binding protein
3384	 58.96	0	3747189..3747980	-	263	39998494	-	GSU3405	-	amino acid ABC transporter, permease protein
3385	 58.60	0	3747981..3748736	-	251	39998495	-	GSU3406	-	amino acid ABC transporter, periplasmic amino acid-binding protein
3386	 62.00	0	3748930..3749808	+	292	39998496	-	GSU3407	-	hypothetical protein
3387	 61.36	0	3749852..3750907	+	351	39998497	-	GSU3408	-	L-threonine aldolase, low-specificity
3388	 58.67	0	3751347..3751571	+	74	39998498	-	GSU3409	-	hypothetical protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.