IslandPathversion 1.0

IslandPath Analysis: Geobacter sulfurreducens PCA



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.71 STD DEV: 5.38
Geobacter sulfurreducens PCA, complete genome - 1..3814139
3446 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2430	 66.46	+1	2680532..2682469	-	645	39997540	-	GSU2445	-	aconitate hydratase
2431	 68.71	+1	2682484..2683902	-	472	39997541	lpdA-1	GSU2446	-	2-oxoglutarate dehydrogenase complex, E3 component, lipoamide dehydrogenase
2432	 70.56	+1	2684162..2684905	-	247	39997542	-	GSU2447	-	hypothetical protein
2433	 66.99	+1	2684931..2686160	-	409	39997543	sucB	GSU2448	-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
2434	 68.01	+1	2686238..2688922	-	894	39997544	kgd	GSU2449	-	alpha-ketoglutarate decarboxylase
2435	 70.79	+1	2689027..2689803	-	258	39997545	-	GSU2450	-	hypothetical protein
2436	 67.87	+1	2689800..2690213	-	137	39997546	-	GSU2451	-	PilB-related protein
2437	 70.13	+1	2690239..2692632	-	797	39997547	-	GSU2452	-	copper-translocating P-type ATPase
2438	 62.96	0	2692625..2693677	-	350	39997548	-	GSU2453	-	hypothetical protein
2439	 64.17	0	2693681..2694721	-	346	39997549	-	GSU2454	-	hypothetical protein
2440	 58.05	0	2694757..2695197	-	146	39997550	-	GSU2455	-	hypothetical protein
2441	 66.80	+1	2695266..2695988	+	240	39997551	-	GSU2456	-	UDP-2,3-diacylglucosamine hydrolase, putative
2442	 68.86	+1	2695997..2696224	-	75	39997552	-	GSU2457	-	hypothetical protein
2443	 66.57	+1	2696275..2697288	-	337	39997553	-	GSU2458	-	penicillin-binding protein, putative
2444	 55.25	-1	2697470..2697688	+	72	39997554	-	GSU2459	-	hypothetical protein
2445	 64.91	0	2697767..2698960	-	397	39997555	-	GSU2460	-	ribonuclease BN, putative
2446	 60.58	0	2699159..2700013	-	284	39997556	-	GSU2461	-	hypothetical protein
2447	 65.76	0	2700316..2701422	+	368	39997557	-	GSU2462	-	homoserine O-acetyltransferase
2448	 68.53	+1	2701468..2702217	-	249	39997558	-	GSU2463	-	glycosyl transferase, group 1 family protein
2449	 70.20	+1	2702238..2702492	-	84	39997559	-	GSU2464	-	hypothetical protein
2450	 65.61	0	2702621..2703376	+	251	39997560	-	GSU2465	-	metallo-beta-lactamase family protein
2451	 61.63	0	2703480..2705324	+	614	39997561	-	GSU2466	-	hypothetical protein
2452	 55.90	0	2705340..2706713	-	457	39997562	-	GSU2467	-	bifunctional hypothetical protein/integrase
2453	 51.00	-1	2706794..2707144	+	116	39997563	-	GSU2468	-	hypothetical protein
2454	 38.23	-2	2707848..2708603	+	251	39997564	-	GSU2469	-	hypothetical protein
2455	 46.67	-2	2708641..2709030	+	129	39997565	-	GSU2470	-	hypothetical protein
2456	 60.84	0	2709108..2710412	-	434	39997566	-	GSU2471	-	group II intron, maturase
2457	 46.27	-2	2710996..2711397	-	133	39997567	vapC	GSU2472	-	virulence associated protein C
2458	 46.93	-2	2711397..2711624	-	75	39997568	vapB	GSU2473	-	virulence associated protein B
2459	 31.31	-2	2711639..2711737	-	32	39997569	-	GSU2474	-	hypothetical protein
2460	 64.60	0	2712307..2715018	+	903	39997570	-	GSU2475	-	sigma-54 dependent transcriptional regulator
2461	 60.67	0	2715279..2716979	+	566	39997571	-	GSU2476	-	TPR domain-containing protein
2462	 61.54	0	2717042..2719636	+	864	39997572	-	GSU2477	-	TPR domain/radical SAM/B12 binding domain-containing protein
2463	 58.57	0	2719839..2720048	+	69	39997573	-	GSU2478	-	hypothetical protein
2464	 61.90	0	2720098..2720223	+	41	39997574	-	GSU2479	-	hypothetical protein
2465	 63.01	0	2720267..2722045	+	592	39997575	kdpA	GSU2480	-	potassium-transporting ATPase subunit A
2466	 62.75	0	2722110..2724179	+	689	39997576	kdpB	GSU2481	-	potassium-transporting ATPase, B subunit
2467	 63.16	0	2724225..2724794	+	189	39997577	kdpC	GSU2482	-	potassium-transporting ATPase, C subunit
2468	 68.21	+1	2724833..2727490	+	885	39997578	kdpD	GSU2483	-	sensor histidine kinase KdpD
2469	 68.23	+1	2727480..2728184	+	234	39997579	kdpE	GSU2484	-	DNA-binding response regulator KdpE
2470	 62.54	0	2728476..2730293	+	605	39997580	-	GSU2485	-	potassium transporter family protein
2471	 69.77	+1	2730317..2731636	-	439	39997581	-	GSU2486	-	hypothetical protein
2472	 70.69	+1	2731633..2732577	-	314	39997582	arcC	GSU2487	-	carbamate kinase
2473	 69.41	+1	2732754..2733845	+	363	39997583	-	GSU2488	-	hypothetical protein
2474	 67.24	+1	2733951..2735339	+	462	39997584	-	GSU2489	-	TatD family deoxyribonuclease
2475	 66.23	+1	2735710..2737077	+	455	39997585	-	GSU2490	-	oxalate/formate antiporter, putative
2476	 67.06	+1	2737208..2738470	+	420	39997586	-	GSU2491	-	major facilitator family transporter
2477	 67.55	+1	2738467..2740959	+	830	39997587	-	GSU2492	-	sensory box histidine kinase
2478	 63.98	0	2741307..2742089	-	260	39997588	-	GSU2493	-	NHL repeat-containing protein
2479	 62.38	0	2742194..2743498	-	434	39997589	-	GSU2494	-	cytochrome c family protein
2480	 63.88	0	2743510..2745450	-	646	39997590	-	GSU2495	-	cytochrome c family protein
2481	 59.38	0	2745508..2747223	-	571	39997591	-	GSU2496	-	hypothetical protein
2482	 65.48	0	2747313..2748491	-	392	39997592	-	GSU2497	-	putative lipoprotein
2483	 64.83	0	2748463..2749062	-	199	39997593	-	GSU2498	-	putative lipoprotein
2484	 63.04	0	2749085..2751262	-	725	39997594	-	GSU2499	-	hypothetical protein
2485	 67.30	+1	2751407..2752828	+	473	39997595	-	GSU2500	-	hypothetical protein
2486	 68.95	+1	2752753..2754066	-	437	39997596	-	GSU2501	-	cytochrome c family protein
2487	 66.99	+1	2754063..2757116	-	1017	39997597	-	GSU2502	-	spermine/spermidine synthase family protein
2488	 65.66	0	2757253..2758545	-	430	39997598	-	GSU2503	-	cytochrome c family protein
2489	 62.82	0	2758656..2759954	-	432	39997599	-	GSU2504	-	cytochrome c family protein
2490	 60.97	0	2760200..2761147	-	315	39997600	-	GSU2505	-	NHL repeat-containing protein
2491	 62.54	0	2762042..2763736	-	564	39997601	-	GSU2506	-	sensory box protein/sigma-54 dependent DNA-binding response regulator
2492	 62.11	0	2763705..2765612	-	635	39997602	-	GSU2507	-	sensor histidine kinase
2493	 68.57	+1	2765786..2767465	+	559	39997603	-	GSU2508	-	TPR domain-containing protein
2494	 64.18	0	2767575..2768339	+	254	39997604	-	GSU2509	-	glycosyl transferase, group 2 family protein
2495	 72.49	+2	2768336..2769262	+	308	39997605	-	GSU2510	-	hypothetical protein
2496	 63.81	0	2769311..2771932	-	873	39997606	-	GSU2511	-	sensory box/GGDEF family protein
2497	 66.67	+1	2772045..2772383	-	112	39997607	-	GSU2512	-	hypothetical protein
2498	 65.99	0	2772615..2773055	+	146	39997608	-	GSU2513	-	cytochrome c family protein
2499	 65.66	0	2773469..2773567	-	32	39997609	-	GSU2514	-	hypothetical protein
2500	 61.97	0	2773615..2774040	+	141	39997610	-	GSU2515	-	cytochrome c family protein, putative
2501	 61.56	0	2774345..2775088	-	247	39997611	-	GSU2516	-	rhodanese-like domain-containing protein
2502	 68.92	+1	2775205..2777202	-	665	39997612	-	GSU2517	-	rhodanese-like domain/cysteine-rich domain-containing protein
2503	 58.87	0	2777199..2777621	-	140	39997613	-	GSU2518	-	hypothetical protein
2504	 62.89	0	2777649..2778812	-	387	39997614	-	GSU2519	-	(R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative
2505	 67.98	+1	2778846..2779607	-	253	39997615	-	GSU2520	-	(R)-2-hydroxyglutaryl-CoA dehydratase activator
2506	 65.99	0	2779657..2780244	-	195	39997616	-	GSU2521	-	hypothetical protein
2507	 60.61	0	2780416..2780778	-	120	39997617	-	GSU2522	-	hypothetical protein
2508	 68.67	+1	2780905..2781801	+	298	39997618	-	GSU2523	-	LysR family transcriptional regulator
2509	 63.73	0	2781835..2783229	+	464	39997619	-	GSU2524	-	sigma-54 dependent DNA-binding response regulator
2510	 67.26	+1	2783251..2783754	-	167	39997620	-	GSU2525	-	nitroreductase family protein
2511	 57.14	0	2783754..2784488	-	244	39997621	-	GSU2526	-	hypothetical protein
2512	 68.20	+1	2784677..2785978	-	433	39997622	-	GSU2527	-	nitrite/sulfite reductase domain-containing protein
2513	 68.27	+1	2786069..2788183	-	704	39997623	-	GSU2528	-	hypothetical protein
2514	 67.83	+1	2788182..2790251	+	689	39997624	fusA-2	GSU2529	-	elongation factor G
2515	 70.29	+1	2790261..2791337	-	358	39997625	-	GSU2530	-	GTPase YjeQ
2516	 63.28	0	2791476..2794637	-	1053	39997626	-	GSU2531	-	sensory box histidine kinase
2517	 61.11	0	2794634..2795065	-	143	39997627	-	GSU2532	-	hypothetical protein
2518	 63.70	0	2795087..2796298	-	403	39997628	-	GSU2533	-	hypothetical protein
2519	 64.83	0	2796313..2797671	-	452	39997629	-	GSU2534	-	sensory box/response regulator
2520	 61.26	0	2797751..2798194	-	147	39997630	-	GSU2535	-	response regulator
2521	 65.31	0	2798512..2799324	-	270	39997631	-	GSU2536	-	dienelactone hydrolase family protein
2522	 59.38	0	2799433..2801340	-	635	39997632	speA	GSU2537	-	arginine decarboxylase
2523	 62.84	0	2801539..2802741	-	400	39997633	nspC	GSU2538	-	carboxynorspermidine decarboxylase
2524	 62.74	0	2802886..2804082	-	398	39997634	LYS1	GSU2539	-	saccharopine dehydrogenase
2525	 60.62	0	2804108..2804653	-	181	39997635	-	GSU2540	-	Cro/CI family transcriptional regulator
2526	 68.51	+1	2804942..2805754	+	270	39997636	proC	GSU2541	-	pyrroline-5-carboxylate reductase
2527	 59.26	0	2805847..2806035	-	62	39997637	-	GSU2542	-	hypothetical protein
2528	 61.52	0	2806022..2806798	-	258	39997638	-	GSU2543	-	polysaccharide deacetylase domain-containing protein
2529	 65.37	0	2806908..2807603	-	231	39997639	-	GSU2544	-	hypothetical protein
60.71	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.