IslandPathversion 1.0

IslandPath Analysis: Geobacter lovleyi SZ



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.66 STD DEV: 5.02
Geobacter lovleyi SZ, complete genome - 1..3917761
3606 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3480	 51.14	0	3776022..3777077	+	351	189426562	-	Glov_3516	-	protein of unknown function DUF1016
3481	 53.94	0	3777190..3778650	+	486	189426563	-	Glov_3517	-	N-6 DNA methylase
3482	 52.63	0	3778690..3778917	+	75	189426564	-	Glov_3518	-	hypothetical protein
3483	 59.04	0	3778904..3780214	+	436	189426565	-	Glov_3519	-	DEAD/DEAH box helicase domain protein
3484	 56.76	0	3780406..3783453	+	1015	189426566	-	Glov_3520	-	multi-sensor signal transduction histidine kinase
3485	 55.56	0	3783450..3784772	+	440	189426567	-	Glov_3521	-	two component, sigma54 specific, transcriptional regulator, Fis family
3486	 58.54	0	3785145..3789008	+	1287	189426568	-	Glov_3522	-	multi-sensor hybrid histidine kinase
3487	 59.25	0	3789002..3790093	+	363	189426569	-	Glov_3523	-	response regulator receiver modulated metal dependent phosphohydrolase
3488	 55.17	0	3790113..3791225	+	370	189426570	-	Glov_3524	-	beta-lactamase domain protein
3489	 58.83	0	3791279..3793255	+	658	189426571	-	Glov_3525	-	methyl-accepting chemotaxis sensory transducer
3490	 62.51	+1	3793421..3795175	+	584	189426572	-	Glov_3526	-	integral membrane sensor signal transduction histidine kinase
3491	 63.97	+1	3795129..3796535	+	468	189426573	-	Glov_3527	-	two component, sigma54 specific, transcriptional regulator, Fis family
3492	 49.21	-1	3796562..3797323	+	253	189426574	-	Glov_3528	-	ABC-type amino acid transport/signal transduction system
3493	 63.72	+1	3797320..3797760	+	146	189426575	-	Glov_3529	-	C_GCAxxG_C_C family protein
3494	 60.10	+1	3798189..3799193	+	334	189426576	-	Glov_3531	-	hypothetical protein
3495	 62.59	+1	3799282..3799821	+	179	189426577	-	Glov_3532	-	DSBA oxidoreductase
3496	 57.44	0	3799998..3800528	+	176	189426578	-	Glov_3533	-	transcriptional regulator, XRE family
3497	 56.24	0	3800525..3801109	+	194	189426579	-	Glov_3534	-	mobile mystery protein B
3498	 47.45	-1	3801248..3802090	-	280	189426580	-	Glov_3535	-	hypothetical protein
3499	 58.67	0	3802691..3803878	-	395	189426581	-	Glov_3537	-	iron-containing alcohol dehydrogenase
3500	 58.84	0	3804035..3804979	+	314	189426582	-	Glov_3538	-	transcriptional regulator, AraC family
3501	 64.88	+2	3805155..3807728	+	857	189426583	-	Glov_3539	-	cyclic nucleotide-binding protein
3502	 60.27	+1	3808046..3809374	+	442	189426584	-	Glov_3540	-	anaerobic c4-dicarboxylate antiporter, Dcu family
3503	 60.00	+1	3809507..3811276	+	589	189426585	-	Glov_3541	-	flavocytochrome c
3504	 65.11	+2	3811342..3812559	+	405	189426586	-	Glov_3542	-	major facilitator superfamily MFS_1
3505	 62.21	+1	3812663..3813874	+	403	189426587	-	Glov_3543	-	signal transduction histidine kinase, LytS
3506	 60.19	+1	3813871..3814626	+	251	189426588	-	Glov_3544	-	two component transcriptional regulator, LytTR family
3507	 60.54	+1	3814902..3816125	+	407	189426589	-	Glov_3545	-	FMN-dependent alpha-hydroxy acid dehydrogenase
3508	 58.51	0	3816153..3817133	+	326	189426590	-	Glov_3546	-	ABC-type phosphate transport system periplasmic component-like protein
3509	 63.08	+1	3817152..3817346	+	64	189426591	-	Glov_3547	-	twin-arginine translocation protein, TatA/E family subunit
3510	 57.36	0	3817416..3818081	-	221	189426592	-	Glov_3548	-	outer membrane chaperone Skp (OmpH)
3511	 58.54	0	3818160..3819341	-	393	189426593	-	Glov_3549	-	methyl-accepting chemotaxis sensory transducer
3512	 60.60	+1	3819406..3821415	-	669	189426594	-	Glov_3550	-	Nitrate reductase
3513	 57.68	0	3821556..3822545	+	329	189426595	-	Glov_3551	-	ADP-L-glycero-D-manno-heptose-6-epimerase
3514	 55.66	0	3822572..3823198	+	208	189426596	-	Glov_3552	-	hypothetical protein
3515	 61.60	+1	3823285..3824232	-	315	189426597	-	Glov_3553	-	cobalamin biosynthesis protein CobD
3516	 60.22	+1	3824229..3826820	-	863	189426598	-	Glov_3554	-	cobyric acid synthase CobQ
3517	 51.74	0	3826846..3827823	-	325	189426599	-	Glov_3555	-	response regulator receiver modulated GAF sensor protein
3518	 57.59	0	3828402..3830306	+	634	189426600	-	Glov_3556	-	TonB-dependent receptor plug
3519	 60.29	+1	3830310..3831140	+	276	189426601	-	Glov_3557	-	periplasmic binding protein
3520	 65.93	+2	3831152..3832102	+	316	189426602	-	Glov_3558	-	transport system permease protein
3521	 60.77	+1	3832099..3832827	+	242	189426603	-	Glov_3559	-	ABC transporter related
3522	 47.24	-1	3832898..3833494	-	198	189426604	-	Glov_3560	-	hypothetical protein
3523	 45.77	-1	3833649..3834251	-	200	189426605	-	Glov_3561	-	hypothetical protein
3524	 54.71	0	3834414..3834848	-	144	189426606	-	Glov_3562	-	hypothetical protein
3525	 57.78	0	3835026..3835565	+	179	189426607	-	Glov_3563	-	YaeQ family protein
3526	 55.28	0	3835572..3835817	+	81	189426608	-	Glov_3564	-	protein of unknown function UPF0270
3527	 61.15	+1	3835845..3837203	-	452	189426609	-	Glov_3565	-	MATE efflux family protein
3528	 59.09	0	3837303..3839981	-	892	189426610	-	Glov_3566	-	pyruvate, phosphate dikinase
3529	 60.91	+1	3840300..3842210	-	636	189426611	-	Glov_3567	-	selenocysteine-specific translation elongation factor
3530	 55.25	0	3842207..3842530	-	107	189426612	-	Glov_3568	-	HNH endonuclease
3531	 62.01	+1	3842533..3843240	-	235	189426613	-	Glov_3569	-	two component transcriptional regulator, winged helix family
3532	 58.37	0	3843233..3844462	-	409	189426614	-	Glov_3570	-	protein of unknown function DUF214
3533	 61.21	+1	3844459..3844989	-	176	189426615	-	Glov_3571	-	Appr-1-p processing domain protein
3534	 52.91	0	3845017..3845394	-	125	189426616	-	Glov_3572	-	PilT protein domain protein
3535	 54.32	0	3845384..3845626	-	80	189426617	-	Glov_3573	-	hypothetical protein
3536	 60.55	+1	3845721..3846488	-	255	189426618	-	Glov_3574	-	RDD domain containing protein
3537	 62.40	+1	3846481..3847488	-	335	189426619	-	Glov_3575	-	protein of unknown function DUF95 transmembrane
3538	 61.80	+1	3847485..3848819	-	444	189426620	-	Glov_3576	-	protein of unknown function DUF58
3539	 61.80	+1	3848816..3849781	-	321	189426621	-	Glov_3577	-	ATPase associated with various cellular activities AAA_3
3540	 59.49	0	3849778..3850947	-	389	189426622	-	Glov_3578	-	hypothetical protein
3541	 59.17	0	3850931..3852571	-	546	189426623	-	Glov_3579	-	hypothetical protein
3542	 58.26	0	3852568..3852888	-	106	189426624	-	Glov_3580	-	rhomboid family protein
3543	 54.71	0	3852885..3853436	-	183	189426625	-	Glov_3581	-	hypothetical protein
3544	 55.00	0	3853433..3854032	-	199	189426626	-	Glov_3582	-	hypothetical protein
3545	 56.98	0	3854032..3854919	-	295	189426627	-	Glov_3583	-	MJ0042 family finger-like protein
3546	 57.45	0	3855051..3855896	-	281	189426628	-	Glov_3584	-	apurinic endonuclease Apn1
3547	 62.54	+1	3855897..3857108	-	403	189426629	-	Glov_3585	-	molybdenum cofactor synthesis domain protein
3548	 57.30	0	3857111..3858028	-	305	189426630	-	Glov_3586	-	quinolinate synthetase complex, A subunit
3549	 58.48	0	3858352..3859035	-	227	189426631	-	Glov_3587	-	hypothetical protein
3550	 56.43	0	3859037..3859417	-	126	189426632	-	Glov_3588	-	hypothetical protein
3551	 53.33	0	3859588..3859842	-	84	189426633	-	Glov_3589	-	ribosomal protein L27
3552	 53.40	0	3859877..3860185	-	102	189426634	-	Glov_3590	-	ribosomal protein L21
3553	 54.19	0	3860464..3861120	-	218	189426635	-	Glov_3591	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
3554	 52.58	0	3861160..3861450	-	96	189426636	-	Glov_3592	-	DNA polymerase beta domain protein region
3555	 52.74	0	3861443..3861844	-	133	189426637	-	Glov_3593	-	nucleotidyltransferase substrate binding protein, HI0074 family
3556	 57.37	0	3861857..3863395	-	512	189426638	-	Glov_3594	-	phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
3557	 55.64	0	3863411..3864625	-	404	189426639	-	Glov_3595	-	efflux transporter, RND family, MFP subunit
3558	 61.48	+1	3865162..3866202	+	346	189426640	-	Glov_3596	-	translation initiation factor, aIF-2BI family
3559	 58.68	0	3866204..3869407	+	1067	189426641	-	Glov_3597	-	(Glutamate--ammonia-ligase) adenylyltransferase
3560	 58.47	0	3869404..3870660	+	418	189426642	-	Glov_3598	-	gamma-glutamyl phosphate reductase
3561	 59.68	+1	3870819..3872393	-	524	189426643	-	Glov_3599	-	FAD dependent oxidoreductase
3562	 55.31	0	3872399..3872803	-	134	189426644	-	Glov_3600	-	response regulator receiver protein
3563	 57.00	0	3872810..3874009	-	399	189426645	-	Glov_3601	-	response regulator receiver sensor signal transduction histidine kinase
3564	 51.54	0	3874037..3874492	-	151	189426646	-	Glov_3602	-	UspA domain protein
3565	 52.02	0	3874492..3874887	-	131	189426647	-	Glov_3603	-	response regulator receiver protein
3566	 58.66	0	3875012..3875848	-	278	189426648	-	Glov_3604	-	transcriptional regulator, putative
3567	 56.89	0	3875860..3876606	-	248	189426649	-	Glov_3605	-	Tetratricopeptide TPR_2 repeat protein
3568	 57.30	0	3876673..3877590	-	305	189426650	-	Glov_3606	-	PfkB domain protein
3569	 54.62	0	3877603..3878457	-	284	189426651	-	Glov_3607	-	methylthioadenosine phosphorylase
3570	 57.93	0	3878454..3879746	-	430	189426652	-	Glov_3608	-	diguanylate cyclase with PAS/PAC sensor
3571	 58.33	0	3879748..3880275	-	175	189426653	-	Glov_3609	-	4-vinyl reductase 4VR
3572	 58.90	0	3880268..3881323	-	351	189426654	-	Glov_3610	-	radical SAM enzyme, Cfr family
3573	 53.48	0	3881379..3881795	-	138	189426655	-	Glov_3611	-	Nucleoside-diphosphate kinase
3574	 60.36	+1	3881979..3883373	+	464	189426656	-	Glov_3612	-	sun protein
3575	 58.71	0	3883384..3884049	+	221	189426657	-	Glov_3613	-	Ribulose-phosphate 3-epimerase
3576	 57.45	0	3884063..3884995	+	310	189426658	-	Glov_3614	-	response regulator receiver modulated diguanylate cyclase
3577	 56.72	0	3885043..3886500	+	485	189426659	-	Glov_3615	-	transglutaminase domain protein
3578	 59.15	0	3886588..3887865	-	425	189426660	-	Glov_3616	-	peptidase M16 domain protein
3579	 55.40	0	3887862..3888296	-	144	189426661	-	Glov_3617	-	histidine triad (HIT) protein
54.66	MEAN

5.02	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.