IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
591	 39.60	+2	630138..630887	-	249	167626816	-	Fphi_0596	-	uridylate kinase
592	 38.97	+1	630891..631760	-	289	167626817	-	Fphi_0597	-	elongation factor Ts
593	 34.75	0	631782..632555	-	257	167626818	-	Fphi_0598	-	30S ribosomal protein S2
594	 31.53	0	632740..633237	+	165	167626819	-	Fphi_0600	-	dihydrofolate reductase
595	 38.89	+1	633234..634169	-	311	167626820	-	Fphi_0599	-	cysteine synthase A
596	 36.03	+1	634284..634802	+	172	167626821	-	Fphi_0601	-	Serine O-acetyltransferase
597	 34.64	0	634990..636444	-	484	167626822	-	Fphi_0602	-	hypothetical protein
598	 36.03	+1	637046..638455	-	469	167626823	-	Fphi_0603	-	glutamyl-tRNA synthetase
599	 35.85	0	638587..640056	-	489	167626824	-	Fphi_0604	-	fumarate hydratase
600	 24.53	-2	640133..640825	+	230	167626825	-	Fphi_0605	-	hypothetical protein
601	 32.72	0	640924..641577	+	217	167626826	-	Fphi_0606	-	dihydropteridine reductase
602	 36.21	+1	641636..642784	+	382	167626827	-	Fphi_0607	-	L-lactate dehydrogenase
603	 35.25	0	642787..644037	-	416	167626828	-	Fphi_0608	-	glutamate-5-semialdehyde dehydrogenase
604	 35.19	0	644038..645168	-	376	167626829	-	Fphi_0609	-	gamma-glutamyl kinase
605	 36.69	+1	645280..645666	-	128	167626830	-	Fphi_0610	-	putative MutT/NUDIX hydrolase
606	 33.33	0	645671..646363	-	230	167626831	-	Fphi_0611	-	hypothetical protein
607	 28.23	-1	646368..646700	-	110	167626832	-	Fphi_0612	-	hypothetical protein
608	 32.66	0	646927..649461	+	844	167626833	-	Fphi_0613	-	phosphoenolpyruvate carboxylase
609	 32.02	0	649476..650084	-	202	167626834	-	Fphi_0614	-	mobilization/cell filamentation protein-like protein
610	 28.26	-1	650084..650536	-	150	167626835	-	Fphi_0615	-	hypothetical protein
611	 25.86	-2	650533..651027	-	164	167626836	-	Fphi_0616	-	hypothetical protein
612	 37.17	+1	651027..653786	-	919	167626837	-	Fphi_0617	-	valyl-tRNA synthetase
613	 32.42	0	653927..654364	-	145	167626838	-	Fphi_0618	-	DNA polymerase III (chi subunit) protein
614	 32.65	0	654461..654901	-	146	167626839	-	Fphi_0619	-	hypothetical protein
615	 30.64	0	654932..655414	-	160	167626840	-	Fphi_0620	-	hypothetical protein
616	 33.18	0	655416..656078	-	220	167626841	-	Fphi_0621	-	pyroglutamyl-peptidase I
617	 32.47	0	656088..657710	-	540	167626842	-	Fphi_0622	-	hypothetical protein
618	 30.20	0	657700..658593	-	297	167626843	-	Fphi_0623	-	TPR repeat-containing protein
619	 34.83	0	658584..659582	-	332	167626844	-	Fphi_0624	-	hypothetical protein
620	 38.02	+1	659584..660585	-	333	167626845	-	Fphi_0625	-	IMP dehydrogenase/GMP reductase:von Willebrand factor, type A
621	 31.87	0	660582..661058	-	158	167626846	-	Fphi_0626	-	hypothetical protein
622	 32.46	0	661048..661959	-	303	167626847	-	Fphi_0627	-	hypothetical protein
623	 38.56	+1	661970..662926	-	318	167626848	-	Fphi_0628	-	MoxR-like ATPase
624	 31.25	0	663074..663505	+	143	167626849	-	Fphi_0629	-	hypothetical protein
625	 33.45	0	663507..664358	+	283	167626850	-	Fphi_0630	-	pyridoxal kinase
626	 30.17	0	664358..665053	+	231	167626851	-	Fphi_0631	-	hypothetical protein
627	 37.44	+1	665125..666171	+	348	167626852	-	Fphi_0632	-	UDP-3-O-(3-fatty acid) glucosamine N-acyltransferase
628	 38.29	+1	666549..668303	+	584	167626853	-	Fphi_0633	-	cytochrome d ubiquinol oxidase subunit I
629	 35.92	0	668314..669510	+	398	167626854	-	Fphi_0634	-	alkaline phosphatase
630	 31.19	0	669695..670441	+	248	167626855	-	Fphi_0635	-	polar amino acid uptake transporter
631	 32.92	0	670454..672610	-	718	167626856	-	Fphi_0636	-	primosomal protein N'
632	 30.72	0	672610..673182	-	190	167626857	-	Fphi_0637	-	nicotinamide ribonucleoside (NR) uptake permease (PnuC) family protein
633	 30.16	0	673202..674398	-	398	167626858	-	Fphi_0638	-	tRNA processing ribonuclease BN
634	 37.39	+1	674411..675001	+	196	167626859	-	Fphi_0639	-	trp repressor binding protein
635	 37.04	+1	675013..675471	+	152	167626860	-	Fphi_0640	-	outer membrane protein
636	 33.99	0	675610..676833	+	407	167626861	-	Fphi_0641	-	major facilitator transporter
637	 34.09	0	676905..677825	+	306	167626862	-	Fphi_0642	-	manganese/zinc/iron chelate uptake transporter family protein
638	 32.74	0	677827..678504	+	225	167626863	-	Fphi_0643	-	ABC transporter, ATP-binding protein
639	 34.38	0	678425..679288	+	287	167626864	-	Fphi_0644	-	permease of ABC transporter
640	 35.86	0	679345..680097	+	250	167626865	-	Fphi_0645	-	dienelactone hydrolase family protein
641	 33.52	0	680475..681017	-	180	167626866	-	Fphi_0646	-	hypoxanthine phosphoribosyltransferase
642	 35.04	0	681020..682306	-	428	167626867	-	Fphi_0647	-	adenylosuccinate synthetase
643	 38.50	+1	682484..684031	+	515	167626868	-	Fphi_0648	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
644	 32.55	0	684099..685367	-	422	167626869	-	Fphi_0649	-	serine permease
645	 32.97	0	685472..686017	-	181	167626870	-	Fphi_0650	-	outer membrane lipoprotein
646	 30.57	0	686075..687052	+	325	167626871	-	Fphi_0651	-	DNA polymerase III, delta subunit
647	 38.63	+1	687165..688202	+	345	167626872	-	Fphi_0652	-	glutamate--ammonia ligase
648	 34.76	0	688276..689820	+	514	167626873	-	Fphi_0653	-	glutaminase
649	 32.23	0	689963..690505	+	180	167626874	-	Fphi_0654	-	hypothetical protein
650	 24.07	-2	690561..690884	-	107	167626875	-	Fphi_1926	-	hypothetical protein
651	 34.94	0	690901..692583	-	560	167626876	-	Fphi_0655	-	lysyl-tRNA synthetase
652	 25.26	-2	692659..692943	-	94	167626877	-	Fphi_0656	-	endonuclease
653	 38.33	+1	692998..694038	-	346	167626878	-	Fphi_0657	-	peptide chain release factor 2
654	 34.36	0	694246..695901	+	551	167626879	-	Fphi_0659	-	DNA-directed DNA polymerase
655	 33.68	0	695898..696755	-	285	167626880	-	Fphi_0658	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
656	 39.15	+2	696977..698110	-	377	167626881	-	Fphi_0660	-	cell division protein FtsZ
657	 36.66	+1	698151..699413	-	420	167626882	-	Fphi_0661	-	cell division protein FtsA
658	 28.22	-1	699515..700198	-	227	167626883	-	Fphi_0662	-	cell division protein FtsQ
659	 37.47	+1	700192..701085	-	297	167626884	-	Fphi_0663	-	D-alanine--D-alanine ligase
660	 36.36	+1	701092..701520	-	142	167626885	-	Fphi_0664	-	zinc-binding protein
661	 35.88	0	701687..703372	+	561	167626886	-	Fphi_0665	-	30S ribosomal protein S1
662	 32.78	0	703496..704038	+	180	167626887	-	Fphi_0666	-	putative SUA5/YciO/YrdC family protein
663	 31.10	0	704132..704668	+	178	167626888	-	Fphi_0667	-	membrane protein of unknown function
664	 30.20	0	704894..705787	-	297	167626889	-	Fphi_0668	-	1-acylglycerol-3-phosphate acyltransferase
665	 27.76	-1	705880..707046	-	388	167626890	-	Fphi_0669	-	competence protein
666	 30.16	0	707049..707993	-	314	167626891	-	Fphi_0670	-	integrase, catalytic region
667	 31.07	0	708061..708942	-	293	167626892	-	Fphi_0671	-	competence-related protein
668	 30.48	0	709097..710566	+	489	167626893	-	Fphi_0672	-	glutathione synthase/ribosomal protein S6 modification enzyme
669	 25.46	-2	710553..710984	+	143	167626894	-	Fphi_0673	-	acetyltransferase GNAT family protein
670	 36.41	+1	711416..713140	+	574	167626895	-	Fphi_0674	-	ABC-type anion transport system, duplicated permease component
671	 34.23	0	713169..713951	+	260	167626896	-	Fphi_0676	-	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component
672	 29.47	-1	713945..714514	-	189	167626897	-	Fphi_0675	-	YggT family protein
673	 35.74	0	714528..715442	-	304	167626898	-	Fphi_0677	-	hypothetical protein
674	 30.68	0	715724..716551	-	275	167626899	-	Fphi_0678	-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
675	 30.94	0	716539..717207	-	222	167626900	-	Fphi_0679	-	lipoprotein releasing system, subunit B, outer membrane lipoprotein
676	 35.37	0	717134..717673	-	179	167626901	-	Fphi_0680	-	carbonic anhydrase
677	 33.12	0	717676..719550	-	624	167626902	-	Fphi_0681	-	monovalent cation:proton antiporter
678	 28.99	-1	719732..720421	+	229	167626903	-	Fphi_1913	-	hypothetical protein
679	 29.43	-1	720408..721226	-	272	167626904	-	Fphi_0682	-	hypothetical protein
680	 32.37	0	721232..721957	-	241	167626905	-	Fphi_0683	-	short chain dehydrogenase
681	 34.26	0	722071..723579	-	502	167626906	-	Fphi_0684	-	membrane protein of unknown function
682	 35.91	0	723691..725010	-	439	167626907	-	Fphi_0685	-	ABC transporter, ATP-binding protein
683	 35.05	0	725031..726836	-	601	167626908	-	Fphi_0686	-	ABC-type anion transport system, duplicated permease component
684	 29.17	-1	726965..727132	+	55	167626909	-	Fphi_0687	-	hypothetical protein
685	 40.19	+2	727133..727774	-	213	167626910	-	Fphi_0688	-	hypothetical protein
686	 31.67	0	728234..728653	-	139	167626911	-	Fphi_0689	-	hypothetical protein
687	 34.86	0	728650..729042	-	130	167626912	-	Fphi_0690	-	CrcB family protein
688	 36.32	+1	729043..729945	-	300	167626913	-	Fphi_0691	-	hydroxymethylbilane synthase
689	 33.48	0	729942..730610	-	222	167626914	-	Fphi_0692	-	carboxylesterase
690	 33.33	0	730942..732816	-	624	167626915	-	Fphi_0693	-	ribonuclease II family protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.