IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3430	 48.72	0	3846728..3847468	-	246	170083093	yiaT	ECDH10B_3765	-	hypothetical protein
3431	 47.69	0	3847592..3848566	+	324	170083094	yiaU	ECDH10B_3766	-	DNA-binding transcriptional regulator
3432	 50.66	0	3848563..3849699	-	378	170083095	yiaV	ECDH10B_3767	-	membrane fusion protein (MFP) component of efflux pump, signal anchor
3433	 46.60	0	3849705..3850028	-	107	170083096	yiaW	ECDH10B_3768	-	inner membrane protein
3434	 54.78	0	3850573..3852111	-	512	170083097	aldB	ECDH10B_3769	-	aldehyde dehydrogenase B
3435	 50.52	0	3852276..3853427	-	383	170083098	yiaY	ECDH10B_3770	-	Fe-containing alcohol dehydrogenase
3436	 56.37	+1	3853617..3855461	-	614	170083099	selB	ECDH10B_3771	-	selenocysteinyl-tRNA-specific translation factor
3437	 52.71	0	3856947..3857555	-	202	170083100	yibF	ECDH10B_3773	-	glutathione S-transferase
3438	 33.69	-2	3861937..3862779	+	280	170083101	yibA	ECDH10B_3775	-	HEAT repeat-containing lyase
3439	 50.28	0	3862821..3863522	+	233	170083102	yibJ	ECDH10B_3776	-	Rhs-family protein
3440	 32.25	-2	3863777..3864238	+	153	170083103	yibG	ECDH10B_3777	-	hypothetical protein
3441	 52.68	0	3865843..3866979	-	378	170083104	yibH	ECDH10B_3778	-	hypothetical protein
3442	 51.52	0	3866982..3867344	-	120	170083105	yibI	ECDH10B_3779	-	inner membrane protein
3443	 53.87	0	3867881..3869794	+	637	170083106	mtlA	ECDH10B_3780	-	fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components
3444	 52.39	0	3870024..3871172	+	382	170083107	mtlD	ECDH10B_3781	-	mannitol-1-phosphate dehydrogenase, NAD(P)-binding
3445	 51.02	0	3871172..3871759	+	195	170083108	mtlR	ECDH10B_3782	-	DNA-binding repressor
3446	 49.05	0	3871771..3871980	-	69	170083109	yibT	ECDH10B_3783	-	hypothetical protein
3447	 50.96	0	3872265..3872627	+	120	170083110	yibL	ECDH10B_3784	-	hypothetical protein
3448	 55.13	0	3872999..3874654	+	551	170083111	lldP	ECDH10B_3785	-	L-lactate permease
3449	 54.05	0	3874654..3875430	+	258	170083112	lldR	ECDH10B_3786	-	DNA-binding transcriptional repressor
3450	 55.67	0	3875427..3876617	+	396	170083113	lldD	ECDH10B_3787	-	L-lactate dehydrogenase, FMN-linked
3451	 55.06	0	3876815..3877288	+	157	170083114	yibK	ECDH10B_3788	-	rRNA methylase
3452	 53.53	0	3877341..3878162	-	273	170083115	cysE	ECDH10B_3789	-	serine acetyltransferase
3453	 56.76	+1	3878242..3879261	-	339	170083116	gpsA	ECDH10B_3790	-	glycerol-3-phosphate dehydrogenase (NAD+)
3454	 50.85	0	3879261..3879728	-	155	170083117	secB	ECDH10B_3791	-	protein export chaperone
3455	 52.38	0	3879791..3880042	-	83	170083118	grxC	ECDH10B_3792	-	glutaredoxin 3
3456	 49.54	0	3880184..3880615	-	143	170083119	yibN	ECDH10B_3793	-	rhodanese-related sulfurtransferase
3457	 53.46	0	3880860..3882404	+	514	170083120	gpmI	ECDH10B_3794	-	phosphoglycero mutase III, cofactor-independent
3458	 57.06	+1	3882438..3883697	+	419	170083121	envC	ECDH10B_3795	-	protease with a role in cell division
3459	 52.71	0	3883701..3884660	+	319	170083122	yibQ	ECDH10B_3796	-	polysaccharide deacetylase
3460	 45.99	-1	3884647..3885681	-	344	170083123	yibD	ECDH10B_3797	-	glycosyl transferase
3461	 51.46	0	3885920..3886945	-	341	170083124	tdh	ECDH10B_3798	-	threonine 3-dehydrogenase, NAD(P)-binding
3462	 54.22	0	3886955..3888151	-	398	170083125	kbl	ECDH10B_3799	-	glycine C-acetyltransferase
3463	 37.06	-2	3888426..3889283	-	285	170083126	htrL	ECDH10B_3800	-	hypothetical protein
3464	 50.91	0	3889587..3890519	+	310	170083127	rfaD	ECDH10B_3801	-	ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding
3465	 53.68	0	3890529..3891575	+	348	170083128	rfaF	ECDH10B_3802	-	ADP-heptose:LPS heptosyltransferase II
3466	 51.04	0	3891579..3892538	+	319	170083129	rfaC	ECDH10B_3803	-	ADP-heptose:LPS heptosyl transferase I
3467	 31.90	-2	3892548..3893807	+	419	170083130	rfaL	ECDH10B_3804	-	O-antigen ligase
3468	 31.01	-2	3893839..3894912	-	357	170083131	rfaK	ECDH10B_3805	-	lipopolysaccharide core biosynthesis
3469	 32.51	-2	3894945..3895796	-	283	170083132	rfaZ	ECDH10B_3806	-	lipopolysaccharide core biosynthesis protein
3470	 35.34	-2	3895867..3896565	-	232	170083133	rfaY	ECDH10B_3807	-	lipopolysaccharide core biosynthesis protein
3471	 33.82	-2	3896583..3897599	-	338	170083134	rfaJ	ECDH10B_3808	-	UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase
3472	 36.18	-2	3897639..3898658	-	339	170083135	rfaI	ECDH10B_3809	-	UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase
3473	 39.37	-2	3898658..3899767	-	369	170083136	rfaB	ECDH10B_3810	-	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase
3474	 26.82	-2	3899781..3900716	-	311	170083137	rfaS	ECDH10B_3811	-	lipopolysaccharide core biosynthesis protein
3475	 43.36	-1	3900753..3901550	-	265	170083138	rfaP	ECDH10B_3812	-	kinase that phosphorylates core heptose of lipopolysaccharide
3476	 44.80	-1	3901543..3902667	-	374	170083139	rfaG	ECDH10B_3813	-	glucosyltransferase I
3477	 44.64	-1	3902664..3903698	-	344	170083140	rfaQ	ECDH10B_3814	-	lipopolysaccharide core biosynthesis protein
3478	 53.91	0	3904140..3905417	+	425	170083141	kdtA	ECDH10B_3815	-	3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
3479	 52.71	0	3905425..3905904	+	159	170083142	coaD	ECDH10B_3816	-	pantetheine-phosphate adenylyltransferase
3480	 53.83	0	3905943..3906752	-	269	170083143	mutM	ECDH10B_3817	-	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase
3481	 40.48	-2	3906850..3907017	-	55	170083144	rpmG	ECDH10B_3818	-	50S ribosomal subunit protein L33
3482	 53.16	0	3907038..3907274	-	78	170083145	rpmB	ECDH10B_3819	-	50S ribosomal subunit protein L28
3483	 47.98	0	3907491..3908159	-	222	170083146	yicR	ECDH10B_3820	-	protein associated with replication fork, DNA repair protein
3484	 53.64	0	3908331..3909551	+	406	170083147	dfp	ECDH10B_3821	-	fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding
3485	 54.61	0	3909532..3909987	+	151	170083148	dut	ECDH10B_3822	-	deoxyuridinetriphosphatase
3486	 53.10	0	3910094..3910690	+	198	170083149	ttk	ECDH10B_3823	-	division inhibitor
3487	 53.12	0	3910727..3911368	-	213	170083150	pyrE	ECDH10B_3824	-	orotate phosphoribosyltransferase
3488	 53.82	0	3912277..3913140	+	287	170083151	yicC	ECDH10B_3826	-	hypothetical protein
3489	 45.82	-1	3913361..3914185	+	274	170083152	dinD	ECDH10B_3827	-	DNA-damage-inducible protein
3490	 53.40	0	3914475..3915092	+	205	170083153	yicG	ECDH10B_3828	-	inner membrane protein
3491	 52.58	0	3915089..3916771	-	560	170083154	ligB	ECDH10B_3829	-	DNA ligase, NAD(+)-dependent
3492	 49.04	0	3917029..3917652	+	207	170083155	gmk	ECDH10B_3830	-	guanylate kinase
3493	 53.26	0	3917707..3917982	+	91	170083156	rpoZ	ECDH10B_3831	-	RNA polymerase, omega subunit
3494	 53.66	0	3918001..3920115	+	704	170083157	spoT	ECDH10B_3832	-	bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
3495	 55.36	0	3920122..3920811	+	229	170083158	spoU	ECDH10B_3833	-	tRNA (guanosine-2'-O-)-methyltransferase
3496	 57.20	+1	3920817..3922898	+	693	170083159	recG	ECDH10B_3834	-	ATP-dependent DNA helicase
3497	 53.65	0	3923067..3924272	-	401	170083160	gltS	ECDH10B_3835	-	glutamate transporter
3498	 54.89	0	3924552..3925943	+	463	170083161	yicE	ECDH10B_3836	-	transporter
3499	 54.21	0	3926064..3927773	+	569	170083162	yicH	ECDH10B_3837	-	hypothetical protein
3500	 52.05	0	3927826..3930144	-	772	170083163	yicI	ECDH10B_3838	-	alpha-glucosidase
3501	 49.39	0	3930154..3931536	-	460	170083164	yicJ	ECDH10B_3839	-	transporter
3502	 46.08	-1	3932560..3933744	+	394	170083165	setC	ECDH10B_3841	-	sugar efflux system
3503	 48.70	0	3933855..3934778	+	307	170083166	yicL	ECDH10B_3842	-	inner membrane protein
3504	 47.37	0	3934782..3935600	-	272	170083167	nlpA	ECDH10B_3843	-	cytoplasmic membrane lipoprotein-28
3505	 42.86	-1	3935822..3936115	+	97	170083168	yicS	ECDH10B_3844	-	hypothetical protein
3506	 52.21	0	3936156..3937511	-	451	170083169	yicM	ECDH10B_3845	-	transporter
3507	 52.76	0	3937557..3938009	-	150	170083170	yicN	ECDH10B_3846	-	hypothetical protein
3508	 48.31	0	3938062..3939396	-	444	170083171	yicO	ECDH10B_3847	-	xanthine/uracil permase
3509	 54.61	0	3939571..3941337	+	588	170083172	ade	ECDH10B_3848	-	cryptic adenine deaminase
3510	 52.87	0	3941383..3942774	-	463	170083173	uhpT	ECDH10B_3849	-	hexose phosphate transporter
3511	 55.00	0	3942912..3944231	-	439	170083174	uhpC	ECDH10B_3850	-	membrane protein regulates uhpT expression
3512	 57.09	+1	3944241..3945743	-	500	170083175	uhpB	ECDH10B_3851	-	sensory histidine kinase in two-component regulatory sytem with UhpA
3513	 58.88	+1	3945743..3946333	-	196	170083176	uhpA	ECDH10B_3852	-	DNA-binding response regulator in two-component regulatory system wtih UhpB
3514	 48.45	0	3946409..3946699	-	96	170083177	ilvN	ECDH10B_3853	-	acetolactate synthase I, small subunit
3515	 56.31	+1	3946703..3948391	-	562	170083178	ilvB	ECDH10B_3854	-	acetolactate synthase I, large subunit
3516	 58.59	+1	3948497..3948595	-	32	170083179	ivbL	ECDH10B_3855	-	ilvB operon leader peptide
3517	 57.13	+1	3949529..3950713	+	394	170083180	emrD	ECDH10B_3856	-	multidrug efflux system protein
3518	 53.61	0	3950721..3951218	-	165	170083181	yidF	ECDH10B_3857	-	DNA-binding transcriptional regulator
3519	 50.41	0	3951215..3951577	-	120	170083182	yidG	ECDH10B_3858	-	inner membrane protein
3520	 52.01	0	3951567..3951914	-	115	170083183	yidH	ECDH10B_3859	-	inner membrane protein
3521	 48.00	0	3952022..3952471	+	149	170083184	yidI	ECDH10B_3860	-	inner membrane protein
3522	 52.01	0	3952518..3954011	-	497	170083185	yidJ	ECDH10B_3861	-	sulfatase/