version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3397 57.88 +1 3812147..3812806 + 219 170083060 yiaD ECDH10B_3731 - outer membrane lipoprotein 3398 52.00 0 3812910..3813884 + 324 170083061 tiaE ECDH10B_3732 - 2-keto-D-gluconate reductase (glyoxalate reductase) (2-ketoaldonate reductase) 3399 50.49 0 3813934..3814644 - 236 170083062 yiaF ECDH10B_3733 - hypothetical protein 3400 43.99 -1 3815078..3815368 + 96 170083063 yiaG ECDH10B_3734 - transcriptional regulator 3401 48.36 0 3815649..3815861 + 70 170083064 cspA ECDH10B_3735 - major cold shock protein 3402 35.29 -2 3816048..3816200 - 50 170083065 hokA ECDH10B_3736 - toxic polypeptide, small 3403 46.17 -1 3816280..3816801 + 173 170083066 insJ ECDH10B_3737 - IS150 protein InsA 3404 42.84 -1 3816798..3817649 + 283 170083067 insK ECDH10B_3738 - IS150 protein InsB 3405 55.41 0 3817928..3819997 - 689 170083068 glyS ECDH10B_3739 - glycine tRNA synthetase, beta subunit 3406 47.67 0 3821013..3821312 - 99 170083069 ysaB ECDH10B_3741 - hypothetical protein 3407 46.79 0 3821487..3822482 + 331 170083070 yiaH ECDH10B_3742 - inner membrane protein 3408 41.10 -2 3822524..3822961 - 145 170083071 yiaA ECDH10B_3743 - inner membrane protein 3409 41.52 -2 3823007..3823348 - 113 170083072 yiaB ECDH10B_3744 - inner membrane protein 3410 54.78 0 3823517..3824971 - 484 170083073 xylB ECDH10B_3745 - xylulokinase 3411 50.87 0 3825043..3826365 - 440 170083074 xylA ECDH10B_3746 - D-xylose isomerase 3412 44.01 -1 3826731..3827723 + 330 170083075 xylF ECDH10B_3747 - D-xylose ABC transporter periplasmic-binding protein 3413 47.08 0 3827801..3829342 + 513 170083076 xylG ECDH10B_3748 - D-xylose ABC transporter ATP-binding protein 3414 53.89 0 3829320..3830501 + 393 170083077 xylH ECDH10B_3749 - D-xylose ABC transporter membrane protein 3415 48.77 0 3830579..3831757 + 392 170083078 xylR ECDH10B_3750 - DNA-binding transcriptional activator, xylose-binding 3416 48.24 0 3831953..3832777 - 274 170083079 bax ECDH10B_3751 - hypothetical protein 3417 52.83 0 3833097..3835127 + 676 170083080 malS ECDH10B_3752 - alpha-amylase 3418 52.15 0 3835305..3836558 + 417 170083081 avtA ECDH10B_3753 - valine-pyruvate aminotransferase 3419 53.59 0 3836709..3837182 - 157 170083082 ysaA ECDH10B_3754 - hydrogenase, 4Fe-4S ferredoxin-type component 3420 52.18 0 3837284..3838132 - 282 170083083 yiaJ ECDH10B_3755 - DNA-binding transcriptional repressor 3421 53.05 0 3838333..3839331 + 332 170083084 yiaK ECDH10B_3756 - 2,3-diketo-L-gulonate dehydrogenase, NADH-dependent 3422 45.30 -1 3839343..3839810 + 155 170083085 yiaL ECDH10B_3757 - hypothetical protein 3423 44.09 -1 3839928..3840401 + 157 170083086 yiaM ECDH10B_3758 - transporter 3424 50.86 0 3840404..3841681 + 425 170083087 yiaN ECDH10B_3759 - transporter 3425 51.17 0 3841694..3842680 + 328 170083088 yiaO ECDH10B_3760 - transporter 3426 57.45 +1 3842684..3844180 + 498 170083089 lyxK ECDH10B_3761 - L-xylulose kinase 3427 59.43 +1 3844177..3844839 + 220 170083090 sgbH ECDH10B_3762 - 3-keto-L-gulonate 6-phosphate decarboxylase 3428 55.75 0 3844832..3845692 + 286 170083091 sgbU ECDH10B_3763 - L-xylulose 5-phosphate 3-epimerase 3429 57.33 +1 3845686..3846381 + 231 170083092 sgbE ECDH10B_3764 - L-ribulose-5-phosphate 4-epimerase 3430 48.72 0 3846728..3847468 - 246 170083093 yiaT ECDH10B_3765 - hypothetical protein 3431 47.69 0 3847592..3848566 + 324 170083094 yiaU ECDH10B_3766 - DNA-binding transcriptional regulator 3432 50.66 0 3848563..3849699 - 378 170083095 yiaV ECDH10B_3767 - membrane fusion protein (MFP) component of efflux pump, signal anchor 3433 46.60 0 3849705..3850028 - 107 170083096 yiaW ECDH10B_3768 - inner membrane protein 3434 54.78 0 3850573..3852111 - 512 170083097 aldB ECDH10B_3769 - aldehyde dehydrogenase B 3435 50.52 0 3852276..3853427 - 383 170083098 yiaY ECDH10B_3770 - Fe-containing alcohol dehydrogenase 3436 56.37 +1 3853617..3855461 - 614 170083099 selB ECDH10B_3771 - selenocysteinyl-tRNA-specific translation factor 3437 52.71 0 3856947..3857555 - 202 170083100 yibF ECDH10B_3773 - glutathione S-transferase 3438 33.69 -2 3861937..3862779 + 280 170083101 yibA ECDH10B_3775 - HEAT repeat-containing lyase 3439 50.28 0 3862821..3863522 + 233 170083102 yibJ ECDH10B_3776 - Rhs-family protein 3440 32.25 -2 3863777..3864238 + 153 170083103 yibG ECDH10B_3777 - hypothetical protein 3441 52.68 0 3865843..3866979 - 378 170083104 yibH ECDH10B_3778 - hypothetical protein 3442 51.52 0 3866982..3867344 - 120 170083105 yibI ECDH10B_3779 - inner membrane protein 3443 53.87 0 3867881..3869794 + 637 170083106 mtlA ECDH10B_3780 - fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components 3444 52.39 0 3870024..3871172 + 382 170083107 mtlD ECDH10B_3781 - mannitol-1-phosphate dehydrogenase, NAD(P)-binding 3445 51.02 0 3871172..3871759 + 195 170083108 mtlR ECDH10B_3782 - DNA-binding repressor 3446 49.05 0 3871771..3871980 - 69 170083109 yibT ECDH10B_3783 - hypothetical protein 3447 50.96 0 3872265..3872627 + 120 170083110 yibL ECDH10B_3784 - hypothetical protein 3448 55.13 0 3872999..3874654 + 551 170083111 lldP ECDH10B_3785 - L-lactate permease 3449 54.05 0 3874654..3875430 + 258 170083112 lldR ECDH10B_3786 - DNA-binding transcriptional repressor 3450 55.67 0 3875427..3876617 + 396 170083113 lldD ECDH10B_3787 - L-lactate dehydrogenase, FMN-linked 3451 55.06 0 3876815..3877288 + 157 170083114 yibK ECDH10B_3788 - rRNA methylase 3452 53.53 0 3877341..3878162 - 273 170083115 cysE ECDH10B_3789 - serine acetyltransferase 3453 56.76 +1 3878242..3879261 - 339 170083116 gpsA ECDH10B_3790 - glycerol-3-phosphate dehydrogenase (NAD+) 3454 50.85 0 3879261..3879728 - 155 170083117 secB ECDH10B_3791 - protein export chaperone 3455 52.38 0 3879791..3880042 - 83 170083118 grxC ECDH10B_3792 - glutaredoxin 3 3456 49.54 0 3880184..3880615 - 143 170083119 yibN ECDH10B_3793 - rhodanese-related sulfurtransferase 3457 53.46 0 3880860..3882404 + 514 170083120 gpmI ECDH10B_3794 - phosphoglycero mutase III, cofactor-independent 3458 57.06 +1 3882438..3883697 + 419 170083121 envC ECDH10B_3795 - protease with a role in cell division 3459 52.71 0 3883701..3884660 + 319 170083122 yibQ ECDH10B_3796 - polysaccharide deacetylase 3460 45.99 -1 3884647..3885681 - 344 170083123 yibD ECDH10B_3797 - glycosyl transferase 3461 51.46 0 3885920..3886945 - 341 170083124 tdh ECDH10B_3798 - threonine 3-dehydrogenase, NAD(P)-binding 3462 54.22 0 3886955..3888151 - 398 170083125 kbl ECDH10B_3799 - glycine C-acetyltransferase 3463 37.06 -2 3888426..3889283 - 285 170083126 htrL ECDH10B_3800 - hypothetical protein 3464 50.91 0 3889587..3890519 + 310 170083127 rfaD ECDH10B_3801 - ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding 3465 53.68 0 3890529..3891575 + 348 170083128 rfaF ECDH10B_3802 - ADP-heptose:LPS heptosyltransferase II 3466 51.04 0 3891579..3892538 + 319 170083129 rfaC ECDH10B_3803 - ADP-heptose:LPS heptosyl transferase I 3467 31.90 -2 3892548..3893807 + 419 170083130 rfaL ECDH10B_3804 - O-antigen ligase 3468 31.01 -2 3893839..3894912 - 357 170083131 rfaK ECDH10B_3805 - lipopolysaccharide core biosynthesis 3469 32.51 -2 3894945..3895796 - 283 170083132 rfaZ ECDH10B_3806 - lipopolysaccharide core biosynthesis protein 3470 35.34 -2 3895867..3896565 - 232 170083133 rfaY ECDH10B_3807 - lipopolysaccharide core biosynthesis protein 3471 33.82 -2 3896583..3897599 - 338 170083134 rfaJ ECDH10B_3808 - UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase 3472 36.18 -2 3897639..3898658 - 339 170083135 rfaI ECDH10B_3809 - UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase 3473 39.37 -2 3898658..3899767 - 369 170083136 rfaB ECDH10B_3810 - UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase 3474 26.82 -2 3899781..3900716 - 311 170083137 rfaS ECDH10B_3811 - lipopolysaccharide core biosynthesis protein 3475 43.36 -1 3900753..3901550 - 265 170083138 rfaP ECDH10B_3812 - kinase that phosphorylates core heptose of lipopolysaccharide 3476 44.80 -1 3901543..3902667 - 374 170083139 rfaG ECDH10B_3813 - glucosyltransferase I 3477 44.64 -1 3902664..3903698 - 344 170083140 rfaQ ECDH10B_3814 - lipopolysaccharide core biosynthesis protein 3478 53.91 0 3904140..3905417 + 425 170083141 kdtA ECDH10B_3815 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) 3479 52.71 0 3905425..3905904 + 159 170083142 coaD ECDH10B_3816 - pantetheine-phosphate adenylyltransferase 3480 53.83 0 3905943..3906752 - 269 170083143 mutM ECDH10B_3817 - formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 3481 40.48 -2 3906850..3907017 - 55 170083144 rpmG ECDH10B_3818 - 50S ribosomal subunit protein L33 3482 53.16 0 3907038..3907274 - 78 170083145 rpmB ECDH10B_3819 - 50S ribosomal subunit protein L28 3483 47.98 0 3907491..3908159 - 222 170083146 yicR ECDH10B_3820 - protein associated with replication fork, DNA repair protein 3484 53.64 0 3908331..3909551 + 406 170083147 dfp ECDH10B_3821 - fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding 3485 54.61 0 3909532..3909987 + 151 170083148 dut ECDH10B_3822 - deoxyuridinetriphosphatase 3486 53.10 0 3910094..3910690 + 198 170083149 ttk ECDH10B_3823 - division inhibitor 3487 53.12 0 3910727..3911368 - 213 170083150 pyrE ECDH10B_3824 - orotate phosphoribosyltransferase 3488 53.82 0 3912277..3913140 + 287 170083151 yicC ECDH10B_3826 - hypothetical protein 3489 45.82 -1 3913361..3914185 + 274 170083152 dinD ECDH10B_3827 - DNA-damage-inducible protein 3490 53.40 0 3914475..3915092 + 205 170083153 yicG ECDH10B_3828 - inner membrane protein 3491 52.58 0 3915089..3916771 - 560 170083154 ligB ECDH10B_3829 - DNA ligase, NAD(+)-dependent 3492 49.04 0 3917029..3917652 + 207 170083155 gmk ECDH10B_3830 - guanylate kinase 3493 53.26 0 3917707..3917982 + 91 170083156 rpoZ ECDH10B_3831 - RNA polymerase, omega subunit 3494 53.66 0 3918001..3920115 + 704 170083157 spoT ECDH10B_3832 - bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3495 55.36 0 3920122..3920811 + 229 170083158 spoU ECDH10B_3833 - tRNA (guanosine-2'-O-)-methyltransferase 3496 57.20 +1 3920817..3922898 + 693 170083159 recG ECDH10B_3834 - ATP-dependent DNA helicase 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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